RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 VPS13DQ5THJ4 4388 aa0.76□□□□□ -2.29
SMCHD1-213ENST00000609587 ZZEF1O43149 2961 aa0.75□□□□□ -2.29
SMCHD1-213ENST00000609587 PRCDQ00LT1 54 aa0.75□□□□□ -2.29
SMCHD1-213ENST00000609587 CRYBG3Q68DQ2 2970 aa0.75□□□□□ -2.29
SMCHD1-213ENST00000609587 NF1P21359 2839 aa0.74□□□□□ -2.29
SMCHD1-213ENST00000609587 TENM2Q9NT68 2774 aa0.74□□□□□ -2.29
SMCHD1-213ENST00000609587 LYSTQ99698 3801 aa0.74□□□□□ -2.29
SMCHD1-213ENST00000609587 FLNCQ14315 2725 aa0.74□□□□□ -2.29
SMCHD1-213ENST00000609587 KMT2AQ03164 3969 aa0.74□□□□□ -2.29
SMCHD1-213ENST00000609587 DMBT1Q9UGM3 2413 aaPredicted RBP0.74□□□□□ -2.29
SMCHD1-213ENST00000609587 PKD1L1Q8TDX9 2849 aa0.74□□□□□ -2.29
SMCHD1-213ENST00000609587 FRYQ5TBA9 3013 aa0.73□□□□□ -2.29
SMCHD1-213ENST00000609587 EPG5Q9HCE0 2579 aa0.73□□□□□ -2.29
SMCHD1-213ENST00000609587 TACC2O95359 2948 aa0.72□□□□□ -2.29
SMCHD1-213ENST00000609587 SPINK1P00995 79 aa0.72□□□□□ -2.29
SMCHD1-213ENST00000609587 DEFB135Q30KP9 77 aa0.72□□□□□ -2.29
SMCHD1-213ENST00000609587 DCHS2Q6V1P9 2916 aa0.72□□□□□ -2.29
SMCHD1-213ENST00000609587 VPS13BQ7Z7G8 4022 aa0.72□□□□□ -2.29
SMCHD1-213ENST00000609587 COL6A5A8TX70 2615 aa0.72□□□□□ -2.29
SMCHD1-213ENST00000609587 MGAQ8IWI9 3026 aa0.72□□□□□ -2.29
SMCHD1-213ENST00000609587 HUWE1Q7Z6Z7 4374 aaKnown RBP0.71□□□□□ -2.3
SMCHD1-213ENST00000609587 M0QZ58 72 aa0.71□□□□□ -2.3
SMCHD1-213ENST00000609587 M0R2T5 61 aa0.71□□□□□ -2.3
SMCHD1-213ENST00000609587 DNAH8Q96JB1 4490 aa0.71□□□□□ -2.3
SMCHD1-213ENST00000609587 COL12A1Q99715 3063 aa0.7□□□□□ -2.3
SMCHD1-213ENST00000609587 ACACAQ13085 2346 aa0.7□□□□□ -2.3
SMCHD1-213ENST00000609587 SETXQ7Z333 2677 aaKnown RBP0.7□□□□□ -2.3
SMCHD1-213ENST00000609587 NSD1Q96L73 2696 aaPredicted RBP0.7□□□□□ -2.3
SMCHD1-213ENST00000609587 H3BSH0 61 aa0.7□□□□□ -2.3
SMCHD1-213ENST00000609587 SPINK6Q6UWN8 80 aa0.7□□□□□ -2.3
SMCHD1-213ENST00000609587 USP24Q9UPU5 2620 aa0.7□□□□□ -2.3
SMCHD1-213ENST00000609587 HIVEP3Q5T1R4 2406 aa0.7□□□□□ -2.3
SMCHD1-213ENST00000609587 PKD1P98161 4303 aa0.7□□□□□ -2.3
SMCHD1-213ENST00000609587 GCN1Q92616 2671 aaKnown RBP0.69□□□□□ -2.3
SMCHD1-213ENST00000609587 RIF1Q5UIP0 2472 aaKnown RBP0.69□□□□□ -2.3
SMCHD1-213ENST00000609587 NBPF19A0A087WUL8 3843 aa0.69□□□□□ -2.3
SMCHD1-213ENST00000609587 PRM1P04553 51 aa0.69□□□□□ -2.3
SMCHD1-213ENST00000609587 UNC79Q9P2D8 2635 aa0.69□□□□□ -2.3
SMCHD1-213ENST00000609587 DNAH2Q9P225 4427 aa0.69□□□□□ -2.3
SMCHD1-213ENST00000609587 STAB1Q9NY15 2570 aa0.69□□□□□ -2.3
SMCHD1-213ENST00000609587 HSPG2P98160 4391 aa0.68□□□□□ -2.3
SMCHD1-213ENST00000609587 RANBP2P49792 3224 aaKnown RBP0.68□□□□□ -2.3
SMCHD1-213ENST00000609587 TOMM7Q9P0U1 55 aa0.68□□□□□ -2.3
SMCHD1-213ENST00000609587 PKHD1L1Q86WI1 4243 aa0.68□□□□□ -2.3
SMCHD1-213ENST00000609587 DYNC2H1Q8NCM8 4307 aaKnown RBP0.67□□□□□ -2.3
SMCHD1-213ENST00000609587 AHNAKQ09666 5890 aaKnown RBP0.67□□□□□ -2.3
SMCHD1-213ENST00000609587 K7EIM0 57 aa0.67□□□□□ -2.3
SMCHD1-213ENST00000609587 SPTBN4Q9H254 2564 aa0.67□□□□□ -2.3
SMCHD1-213ENST00000609587 NBEAL2Q6ZNJ1 2754 aa0.67□□□□□ -2.3
SMCHD1-213ENST00000609587 PTPN13Q12923 2485 aa0.66□□□□□ -2.3
SMCHD1-213ENST00000609587 DNAH3Q8TD57 4116 aa0.66□□□□□ -2.3
SMCHD1-213ENST00000609587 USP9YO00507 2555 aaPredicted RBP0.66□□□□□ -2.3
SMCHD1-213ENST00000609587 ANK3Q12955 4377 aaKnown RBP0.66□□□□□ -2.3
SMCHD1-213ENST00000609587 ZFYVE26Q68DK2 2539 aa0.66□□□□□ -2.3
SMCHD1-213ENST00000609587 MUC5BQ9HC84 5762 aaPredicted RBP0.66□□□□□ -2.3
SMCHD1-213ENST00000609587 H0YGG7 62 aa0.66□□□□□ -2.3
SMCHD1-213ENST00000609587 HIVEP1P15822 2718 aa0.66□□□□□ -2.3
SMCHD1-213ENST00000609587 CCDC168Q8NDH2 2452 aa0.66□□□□□ -2.3
SMCHD1-213ENST00000609587 SPENQ96T58 3664 aaKnown RBP0.66□□□□□ -2.3
SMCHD1-213ENST00000609587 DMXL1Q9Y485 3027 aa0.66□□□□□ -2.3
SMCHD1-213ENST00000609587 ACANP16112 2415 aa0.66□□□□□ -2.3
SMCHD1-213ENST00000609587 APC2O95996 2303 aa0.65□□□□□ -2.3
SMCHD1-213ENST00000609587 RELNP78509 3460 aa0.65□□□□□ -2.31
SMCHD1-213ENST00000609587 GPR98Q8WXG9 6306 aa0.65□□□□□ -2.31
SMCHD1-213ENST00000609587 COL7A1Q02388 2944 aa0.65□□□□□ -2.31
SMCHD1-213ENST00000609587 FAM186AA6NE01 2351 aa0.64□□□□□ -2.31
SMCHD1-213ENST00000609587 LAMA5O15230 3695 aa0.64□□□□□ -2.31
SMCHD1-213ENST00000609587 C9orf92A6NGG3 77 aa0.64□□□□□ -2.31
SMCHD1-213ENST00000609587 DEFB104AQ8WTQ1 72 aa0.64□□□□□ -2.31
SMCHD1-213ENST00000609587 ITPR3Q14573 2671 aa0.64□□□□□ -2.31
SMCHD1-213ENST00000609587 FLNBO75369 2602 aaKnown RBP0.64□□□□□ -2.31
SMCHD1-213ENST00000609587 CFAP54Q96N23 3096 aa0.63□□□□□ -2.31
SMCHD1-213ENST00000609587 HECTD4Q9Y4D8 3996 aa0.63□□□□□ -2.31
SMCHD1-213ENST00000609587 ZFHX4Q86UP3 3567 aa0.63□□□□□ -2.31
SMCHD1-213ENST00000609587 KRTAP21-1Q3LI58 79 aa0.63□□□□□ -2.31
SMCHD1-213ENST00000609587 TMEM167AQ8TBQ9 72 aa0.63□□□□□ -2.31
SMCHD1-213ENST00000609587 U3KQA8 63 aa0.63□□□□□ -2.31
SMCHD1-213ENST00000609587 LRP1Q07954 4544 aaKnown RBP0.63□□□□□ -2.31
SMCHD1-213ENST00000609587 TNP1P09430 55 aa0.62□□□□□ -2.31
SMCHD1-213ENST00000609587 CUBNO60494 3623 aa0.62□□□□□ -2.31
SMCHD1-213ENST00000609587 UTP20O75691 2785 aaKnown RBP0.62□□□□□ -2.31
SMCHD1-213ENST00000609587 CELSR3Q9NYQ7 3312 aa0.61□□□□□ -2.31
SMCHD1-213ENST00000609587 KALRNO60229 2985 aa0.61□□□□□ -2.31
SMCHD1-213ENST00000609587 LRRK2Q5S007 2527 aa0.61□□□□□ -2.31
SMCHD1-213ENST00000609587 ANKHD1Q8IWZ3 2542 aaKnown RBP0.61□□□□□ -2.31
SMCHD1-213ENST00000609587 MTORP42345 2549 aa0.61□□□□□ -2.31
SMCHD1-213ENST00000609587 APOBP04114 4563 aaKnown RBP0.6□□□□□ -2.31
SMCHD1-213ENST00000609587 DMXL2Q8TDJ6 3036 aa0.6□□□□□ -2.31
SMCHD1-213ENST00000609587 DNAH9Q9NYC9 4486 aa0.6□□□□□ -2.31
SMCHD1-213ENST00000609587 ANKRD11Q6UB99 2663 aaPredicted RBP0.6□□□□□ -2.31
SMCHD1-213ENST00000609587 ATMQ13315 3056 aa0.6□□□□□ -2.31
SMCHD1-213ENST00000609587 SPTBN5Q9NRC6 3674 aaKnown RBP0.6□□□□□ -2.31
SMCHD1-213ENST00000609587 DNAH7Q8WXX0 4024 aa0.6□□□□□ -2.31
SMCHD1-213ENST00000609587 CEP250Q9BV73 2442 aa0.59□□□□□ -2.31
SMCHD1-213ENST00000609587 NBEAQ8NFP9 2946 aa0.59□□□□□ -2.31
SMCHD1-213ENST00000609587 FAT3Q8TDW7 4589 aa0.59□□□□□ -2.32
SMCHD1-213ENST00000609587 LPAP08519 4548 aa0.58□□□□□ -2.32
SMCHD1-213ENST00000609587 HRNRQ86YZ3 2850 aaPredicted RBP0.58□□□□□ -2.32
SMCHD1-213ENST00000609587 CACNA1AO00555 2505 aa0.58□□□□□ -2.32
SMCHD1-213ENST00000609587 SPRR2DP22532 72 aa0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms