RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 ABCA10Q8WWZ4 1543 aa-0.11□□□□□ -2.43
SCFD1-208ENST00000553278 MUC12Q9UKN1 5478 aa-0.11□□□□□ -2.43
SCFD1-208ENST00000553278 DMXL1Q9Y485 3027 aa-0.11□□□□□ -2.43
SCFD1-208ENST00000553278 SVEP1Q4LDE5 3571 aa-0.11□□□□□ -2.43
SCFD1-208ENST00000553278 SRRM2Q9UQ35 2752 aaKnown RBP-0.11□□□□□ -2.43
SCFD1-208ENST00000553278 DSTQ03001 7570 aaKnown RBP-0.12□□□□□ -2.43
SCFD1-208ENST00000553278 FLGP20930 4061 aaPredicted RBP-0.12□□□□□ -2.43
SCFD1-208ENST00000553278 GCN1Q92616 2671 aaKnown RBP-0.12□□□□□ -2.43
SCFD1-208ENST00000553278 KRTAP19-8Q3LI54 63 aa-0.12□□□□□ -2.43
SCFD1-208ENST00000553278 KRTAP20-2Q3LI61 65 aa-0.12□□□□□ -2.43
SCFD1-208ENST00000553278 GLI2P10070 1586 aa-0.12□□□□□ -2.43
SCFD1-208ENST00000553278 EPG5Q9HCE0 2579 aa-0.12□□□□□ -2.43
SCFD1-208ENST00000553278 MT4P47944 62 aa-0.13□□□□□ -2.43
SCFD1-208ENST00000553278 CLASP1Q7Z460 1538 aa-0.13□□□□□ -2.43
SCFD1-208ENST00000553278 ANKRD11Q6UB99 2663 aaPredicted RBP-0.15□□□□□ -2.43
SCFD1-208ENST00000553278 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.15□□□□□ -2.43
SCFD1-208ENST00000553278 MTORP42345 2549 aa-0.15□□□□□ -2.43
SCFD1-208ENST00000553278 CROCC2H7BZ55 1655 aa-0.15□□□□□ -2.43
SCFD1-208ENST00000553278 HTTP42858 3142 aa-0.16□□□□□ -2.43
SCFD1-208ENST00000553278 H3BUA1 57 aa-0.16□□□□□ -2.44
SCFD1-208ENST00000553278 MUC2Q02817 5179 aa-0.17□□□□□ -2.44
SCFD1-208ENST00000553278 ALS2Q96Q42 1657 aa-0.17□□□□□ -2.44
SCFD1-208ENST00000553278 SPRR2EP22531 72 aa-0.17□□□□□ -2.44
SCFD1-208ENST00000553278 DOPEY1Q5JWR5 2465 aa-0.17□□□□□ -2.44
SCFD1-208ENST00000553278 TOGARAM1Q9Y4F4 1720 aa-0.17□□□□□ -2.44
SCFD1-208ENST00000553278 HIVEP1P15822 2718 aa-0.17□□□□□ -2.44
SCFD1-208ENST00000553278 NEBP20929 6669 aa-0.18□□□□□ -2.44
SCFD1-208ENST00000553278 CDC42BPAQ5VT25 1732 aa-0.18□□□□□ -2.44
SCFD1-208ENST00000553278 MXRA5Q9NR99 2828 aa-0.19□□□□□ -2.44
SCFD1-208ENST00000553278 LRRK2Q5S007 2527 aa-0.19□□□□□ -2.44
SCFD1-208ENST00000553278 LAMA5O15230 3695 aa-0.19□□□□□ -2.44
SCFD1-208ENST00000553278 CPS1P31327 1500 aa-0.2□□□□□ -2.44
SCFD1-208ENST00000553278 FASNP49327 2511 aaKnown RBP-0.2□□□□□ -2.44
SCFD1-208ENST00000553278 VPS13BQ7Z7G8 4022 aa-0.2□□□□□ -2.44
SCFD1-208ENST00000553278 PCLOQ9Y6V0 5065 aa-0.21□□□□□ -2.44
SCFD1-208ENST00000553278 KMT2CQ8NEZ4 4911 aaKnown RBP-0.21□□□□□ -2.44
SCFD1-208ENST00000553278 ITPR3Q14573 2671 aa-0.21□□□□□ -2.44
SCFD1-208ENST00000553278 SPRR2FQ96RM1 72 aa-0.21□□□□□ -2.44
SCFD1-208ENST00000553278 USP9YO00507 2555 aaPredicted RBP-0.21□□□□□ -2.44
SCFD1-208ENST00000553278 EEA1Q15075 1411 aa-0.21□□□□□ -2.44
SCFD1-208ENST00000553278 LAMA2P24043 3122 aaKnown RBP-0.22□□□□□ -2.44
SCFD1-208ENST00000553278 UGGT1Q9NYU2 1555 aa-0.22□□□□□ -2.44
SCFD1-208ENST00000553278 MT1AP04731 61 aa-0.22□□□□□ -2.44
SCFD1-208ENST00000553278 TACC2O95359 2948 aa-0.22□□□□□ -2.45
SCFD1-208ENST00000553278 HERC1Q15751 4861 aa-0.22□□□□□ -2.45
SCFD1-208ENST00000553278 MYO18BQ8IUG5 2567 aa-0.23□□□□□ -2.45
SCFD1-208ENST00000553278 IGIPA6NJ69 53 aa-0.23□□□□□ -2.45
SCFD1-208ENST00000553278 MT1HP80294 61 aa-0.23□□□□□ -2.45
SCFD1-208ENST00000553278 USP9XQ93008 2570 aaPredicted RBP-0.23□□□□□ -2.45
SCFD1-208ENST00000553278 PRXQ9BXM0 1461 aa-0.23□□□□□ -2.45
SCFD1-208ENST00000553278 DNAH9Q9NYC9 4486 aa-0.23□□□□□ -2.45
SCFD1-208ENST00000553278 UTP20O75691 2785 aaKnown RBP-0.23□□□□□ -2.45
SCFD1-208ENST00000553278 HERC2O95714 4834 aa-0.24□□□□□ -2.45
SCFD1-208ENST00000553278 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.24□□□□□ -2.45
SCFD1-208ENST00000553278 TEP1Q99973 2627 aaKnown RBP-0.24□□□□□ -2.45
SCFD1-208ENST00000553278 KALRNO60229 2985 aa-0.24□□□□□ -2.45
SCFD1-208ENST00000553278 DEFB1P60022 68 aa-0.24□□□□□ -2.45
SCFD1-208ENST00000553278 TMEM167BQ9NRX6 74 aa-0.24□□□□□ -2.45
SCFD1-208ENST00000553278 AKAP9Q99996 3911 aa-0.24□□□□□ -2.45
SCFD1-208ENST00000553278 USH2AO75445 5202 aa-0.24□□□□□ -2.45
SCFD1-208ENST00000553278 CUBNO60494 3623 aa-0.25□□□□□ -2.45
SCFD1-208ENST00000553278 MT1HL1P0DM35 61 aa-0.25□□□□□ -2.45
SCFD1-208ENST00000553278 DEFB110Q30KQ9 67 aa-0.25□□□□□ -2.45
SCFD1-208ENST00000553278 ACACAQ13085 2346 aa-0.25□□□□□ -2.45
SCFD1-208ENST00000553278 LAMA1P25391 3075 aa-0.25□□□□□ -2.45
SCFD1-208ENST00000553278 FAT1Q14517 4588 aa-0.26□□□□□ -2.45
SCFD1-208ENST00000553278 NIPBLQ6KC79 2804 aaeCLIP-0.26□□□□□ -2.45
SCFD1-208ENST00000553278 MGAM2Q2M2H8 2515 aa-0.26□□□□□ -2.45
SCFD1-208ENST00000553278 MT1XP80297 61 aa-0.27□□□□□ -2.45
SCFD1-208ENST00000553278 CLPSL2Q6UWE3 100 aa-0.27□□□□□ -2.45
SCFD1-208ENST00000553278 NBEAQ8NFP9 2946 aa-0.27□□□□□ -2.45
SCFD1-208ENST00000553278 RYR1P21817 5038 aa-0.28□□□□□ -2.45
SCFD1-208ENST00000553278 STARD9Q9P2P6 4700 aa-0.28□□□□□ -2.45
SCFD1-208ENST00000553278 RIF1Q5UIP0 2472 aaKnown RBP-0.28□□□□□ -2.45
SCFD1-208ENST00000553278 KIAA1109Q2LD37 5005 aa-0.28□□□□□ -2.45
SCFD1-208ENST00000553278 UBR4Q5T4S7 5183 aa-0.28□□□□□ -2.45
SCFD1-208ENST00000553278 CCDC168Q8NDH2 2452 aa-0.28□□□□□ -2.45
SCFD1-208ENST00000553278 MAST1Q9Y2H9 1570 aa-0.28□□□□□ -2.45
SCFD1-208ENST00000553278 CELSR3Q9NYQ7 3312 aa-0.28□□□□□ -2.45
SCFD1-208ENST00000553278 RYR3Q15413 4870 aa-0.29□□□□□ -2.46
SCFD1-208ENST00000553278 NBPF19A0A087WUL8 3843 aa-0.29□□□□□ -2.46
SCFD1-208ENST00000553278 LAMA3Q16787 3333 aa-0.29□□□□□ -2.46
SCFD1-208ENST00000553278 WDR87Q6ZQQ6 2873 aa-0.29□□□□□ -2.46
SCFD1-208ENST00000553278 FAM186AA6NE01 2351 aa-0.29□□□□□ -2.46
SCFD1-208ENST00000553278 IGLV5-48A0A075B6I7 105 aa-0.29□□□□□ -2.46
SCFD1-208ENST00000553278 EPPK1P58107 5090 aaKnown RBP-0.29□□□□□ -2.46
SCFD1-208ENST00000553278 TEX15Q9BXT5 2789 aa-0.29□□□□□ -2.46
SCFD1-208ENST00000553278 MT1EP04732 61 aa-0.3□□□□□ -2.46
SCFD1-208ENST00000553278 TNP1P09430 55 aa-0.3□□□□□ -2.46
SCFD1-208ENST00000553278 KRTAP19-5Q3LI72 72 aa-0.3□□□□□ -2.46
SCFD1-208ENST00000553278 MT1MQ8N339 61 aa-0.3□□□□□ -2.46
SCFD1-208ENST00000553278 NOP10Q9NPE3 64 aaKnown RBP-0.3□□□□□ -2.46
SCFD1-208ENST00000553278 HYDINQ4G0P3 5121 aa-0.3□□□□□ -2.46
SCFD1-208ENST00000553278 TRIOO75962 3097 aa-0.3□□□□□ -2.46
SCFD1-208ENST00000553278 DNAH6Q9C0G6 4158 aa-0.31□□□□□ -2.46
SCFD1-208ENST00000553278 FAT3Q8TDW7 4589 aa-0.31□□□□□ -2.46
SCFD1-208ENST00000553278 COL12A1Q99715 3063 aa-0.31□□□□□ -2.46
SCFD1-208ENST00000553278 NBEAL2Q6ZNJ1 2754 aa-0.31□□□□□ -2.46
SCFD1-208ENST00000553278 BIRC6Q9NR09 4857 aa-0.31□□□□□ -2.46
SCFD1-208ENST00000553278 ACACBO00763 2458 aa-0.31□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms