RNA–Protein interactions for RNA: ENST00000541363.5

HMGA2-210, Transcript of high mobility group AT-hook 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA2, Length 8,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-210ENST00000541363 WDFY4Q6ZS81 3184 aa7.55□□□□□ -1.2
HMGA2-210ENST00000541363 TENM3Q9P273 2699 aa7.55□□□□□ -1.2
HMGA2-210ENST00000541363 KALRNO60229 2985 aa7.54□□□□□ -1.2
HMGA2-210ENST00000541363 TRIOO75962 3097 aa7.53□□□□□ -1.2
HMGA2-210ENST00000541363 CRYBG3Q68DQ2 2970 aa7.51□□□□□ -1.21
HMGA2-210ENST00000541363 TGP01266 2768 aa7.5□□□□□ -1.21
HMGA2-210ENST00000541363 CHD9Q3L8U1 2897 aa7.5□□□□□ -1.21
HMGA2-210ENST00000541363 KRTAP12-1P59990 96 aa7.49□□□□□ -1.21
HMGA2-210ENST00000541363 UNC80Q8N2C7 3258 aa7.44□□□□□ -1.22
HMGA2-210ENST00000541363 VPS13AQ96RL7 3174 aa7.43□□□□□ -1.22
HMGA2-210ENST00000541363 CHD7Q9P2D1 2997 aa7.41□□□□□ -1.22
HMGA2-210ENST00000541363 CELSR3Q9NYQ7 3312 aa7.38□□□□□ -1.23
HMGA2-210ENST00000541363 ASH1LQ9NR48 2969 aaKnown RBP7.37□□□□□ -1.23
HMGA2-210ENST00000541363 LAMA1P25391 3075 aa7.36□□□□□ -1.23
HMGA2-210ENST00000541363 NIPBLQ6KC79 2804 aaeCLIP7.35□□□□□ -1.23
HMGA2-210ENST00000541363 XIRP2A4UGR9 3374 aa7.35□□□□□ -1.23
HMGA2-210ENST00000541363 RANBP2P49792 3224 aaKnown RBP7.35□□□□□ -1.23
HMGA2-210ENST00000541363 HIVEP1P15822 2718 aa7.35□□□□□ -1.23
HMGA2-210ENST00000541363 COL12A1Q99715 3063 aa7.33□□□□□ -1.24
HMGA2-210ENST00000541363 MKI67P46013 3256 aaKnown RBP7.33□□□□□ -1.24
HMGA2-210ENST00000541363 TENM1Q9UKZ4 2725 aa7.3□□□□□ -1.24
HMGA2-210ENST00000541363 TACC2O95359 2948 aa7.27□□□□□ -1.25
HMGA2-210ENST00000541363 PRUNE2Q8WUY3 3088 aa7.27□□□□□ -1.25
HMGA2-210ENST00000541363 PDZD2O15018 2839 aa7.26□□□□□ -1.25
HMGA2-210ENST00000541363 SRRM2Q9UQ35 2752 aaKnown RBP7.24□□□□□ -1.25
HMGA2-210ENST00000541363 CRCT1Q9UGL9 99 aa7.24□□□□□ -1.25
HMGA2-210ENST00000541363 NF1P21359 2839 aa7.23□□□□□ -1.25
HMGA2-210ENST00000541363 DMXL2Q8TDJ6 3036 aa7.23□□□□□ -1.25
HMGA2-210ENST00000541363 TNRC18O15417 2968 aaPredicted RBP7.17□□□□□ -1.26
HMGA2-210ENST00000541363 CELSR2Q9HCU4 2923 aa7.16□□□□□ -1.26
HMGA2-210ENST00000541363 NBEAQ8NFP9 2946 aa7.13□□□□□ -1.27
HMGA2-210ENST00000541363 FLNCQ14315 2725 aa7.1□□□□□ -1.27
HMGA2-210ENST00000541363 KRTAP10-12P60413 245 aa7.08□□□□□ -1.28
HMGA2-210ENST00000541363 DMXL1Q9Y485 3027 aa7.07□□□□□ -1.28
HMGA2-210ENST00000541363 ZZEF1O43149 2961 aa7.04□□□□□ -1.28
HMGA2-210ENST00000541363 CFAP47Q6ZTR5 3102 aa7.03□□□□□ -1.28
HMGA2-210ENST00000541363 COL6A3P12111 3177 aa7.02□□□□□ -1.29
HMGA2-210ENST00000541363 KRTAP3-1Q9BYR8 98 aa7.02□□□□□ -1.29
HMGA2-210ENST00000541363 DNAH14Q0VDD8 3507 aa7.01□□□□□ -1.29
HMGA2-210ENST00000541363 CELSR1Q9NYQ6 3014 aa6.98□□□□□ -1.29
HMGA2-210ENST00000541363 ATMQ13315 3056 aa6.97□□□□□ -1.29
HMGA2-210ENST00000541363 BOD1L1Q8NFC6 3051 aa6.95□□□□□ -1.3
HMGA2-210ENST00000541363 KRTAP23-1A1A580 65 aa6.95□□□□□ -1.3
HMGA2-210ENST00000541363 HTTP42858 3142 aa6.95□□□□□ -1.3
HMGA2-210ENST00000541363 KRTAP10-6P60371 365 aaPredicted RBP6.95□□□□□ -1.3
HMGA2-210ENST00000541363 LAMA3Q16787 3333 aa6.95□□□□□ -1.3
HMGA2-210ENST00000541363 ZFHX3Q15911 3703 aa6.94□□□□□ -1.3
HMGA2-210ENST00000541363 TENM4Q6N022 2769 aa6.93□□□□□ -1.3
HMGA2-210ENST00000541363 DCHS2Q6V1P9 2916 aa6.93□□□□□ -1.3
HMGA2-210ENST00000541363 ADGRG4Q8IZF6 3080 aa6.9□□□□□ -1.3
HMGA2-210ENST00000541363 SPEGQ15772 3267 aa6.9□□□□□ -1.31
HMGA2-210ENST00000541363 USP34Q70CQ2 3546 aa6.89□□□□□ -1.31
HMGA2-210ENST00000541363 KRTAP12-3P60328 96 aa6.85□□□□□ -1.31
HMGA2-210ENST00000541363 BRCA2P51587 3418 aa6.82□□□□□ -1.32
HMGA2-210ENST00000541363 VCANP13611 3396 aa6.81□□□□□ -1.32
HMGA2-210ENST00000541363 TENM2Q9NT68 2774 aa6.8□□□□□ -1.32
HMGA2-210ENST00000541363 FBN2P35556 2912 aa6.79□□□□□ -1.32
HMGA2-210ENST00000541363 ZANQ9Y493 2812 aa6.78□□□□□ -1.32
HMGA2-210ENST00000541363 KRTAP10-5P60370 271 aa6.78□□□□□ -1.32
HMGA2-210ENST00000541363 MXRA5Q9NR99 2828 aa6.77□□□□□ -1.33
HMGA2-210ENST00000541363 ZFHX4Q86UP3 3567 aa6.75□□□□□ -1.33
HMGA2-210ENST00000541363 CDH23Q9H251 3354 aa6.73□□□□□ -1.33
HMGA2-210ENST00000541363 HRNRQ86YZ3 2850 aaPredicted RBP6.72□□□□□ -1.33
HMGA2-210ENST00000541363 LCE3AQ5TA76 89 aa6.68□□□□□ -1.34
HMGA2-210ENST00000541363 PKD1L1Q8TDX9 2849 aa6.65□□□□□ -1.34
HMGA2-210ENST00000541363 COL7A1Q02388 2944 aa6.6□□□□□ -1.35
HMGA2-210ENST00000541363 VWFP04275 2813 aa6.6□□□□□ -1.35
HMGA2-210ENST00000541363 MEGF8Q7Z7M0 2845 aa6.59□□□□□ -1.35
HMGA2-210ENST00000541363 NBPF19A0A087WUL8 3843 aa6.59□□□□□ -1.36
HMGA2-210ENST00000541363 KRTAP3-2Q9BYR7 98 aa6.59□□□□□ -1.36
HMGA2-210ENST00000541363 SZT2Q5T011 3432 aa6.57□□□□□ -1.36
HMGA2-210ENST00000541363 KRTAP3-3Q9BYR6 98 aa6.55□□□□□ -1.36
HMGA2-210ENST00000541363 KRTAP8-1Q8IUC2 63 aa6.51□□□□□ -1.37
HMGA2-210ENST00000541363 LOC400499M0QZD8 3231 aa6.49□□□□□ -1.37
HMGA2-210ENST00000541363 EYSQ5T1H1 3165 aa6.42□□□□□ -1.38
HMGA2-210ENST00000541363 ALMS1Q8TCU4 4167 aa6.41□□□□□ -1.38
HMGA2-210ENST00000541363 WDFY3Q8IZQ1 3526 aa6.41□□□□□ -1.38
HMGA2-210ENST00000541363 DCHS1Q96JQ0 3298 aa6.39□□□□□ -1.39
HMGA2-210ENST00000541363 OTOGQ6ZRI0 2925 aa6.38□□□□□ -1.39
HMGA2-210ENST00000541363 ASPMQ8IZT6 3477 aa6.37□□□□□ -1.39
HMGA2-210ENST00000541363 MT1HL1P0DM35 61 aa6.35□□□□□ -1.39
HMGA2-210ENST00000541363 SPTBN5Q9NRC6 3674 aaKnown RBP6.33□□□□□ -1.4
HMGA2-210ENST00000541363 FBN3Q75N90 2809 aa6.29□□□□□ -1.4
HMGA2-210ENST00000541363 LORP23490 312 aaPredicted RBP6.24□□□□□ -1.41
HMGA2-210ENST00000541363 SPENQ96T58 3664 aaKnown RBP6.23□□□□□ -1.41
HMGA2-210ENST00000541363 AKAP9Q99996 3911 aa6.19□□□□□ -1.42
HMGA2-210ENST00000541363 CSMD1Q96PZ7 3565 aa6.18□□□□□ -1.42
HMGA2-210ENST00000541363 KRTAP10-7P60409 375 aaPredicted RBP6.16□□□□□ -1.42
HMGA2-210ENST00000541363 KRTAP19-4Q3LI73 84 aa6.16□□□□□ -1.42
HMGA2-210ENST00000541363 LAMA5O15230 3695 aa6.14□□□□□ -1.43
HMGA2-210ENST00000541363 MYO15AQ9UKN7 3530 aa6.12□□□□□ -1.43
HMGA2-210ENST00000541363 KRTAP4-5Q9BYR2 181 aa6□□□□□ -1.45
HMGA2-210ENST00000541363 SMG1Q96Q15 3661 aaKnown RBP5.99□□□□□ -1.45
HMGA2-210ENST00000541363 FBN1P35555 2871 aaKnown RBP5.95□□□□□ -1.46
HMGA2-210ENST00000541363 CMYA5Q8N3K9 4069 aa5.95□□□□□ -1.46
HMGA2-210ENST00000541363 RELNP78509 3460 aa5.95□□□□□ -1.46
HMGA2-210ENST00000541363 SPRR2FQ96RM1 72 aa5.93□□□□□ -1.46
HMGA2-210ENST00000541363 LCE3CQ5T5A8 94 aa5.92□□□□□ -1.46
HMGA2-210ENST00000541363 KRTAP10-4P60372 401 aaPredicted RBP5.91□□□□□ -1.46
HMGA2-210ENST00000541363 HUWE1Q7Z6Z7 4374 aaKnown RBP5.9□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms