RNA–Protein interactions for RNA: ENST00000541363.5

HMGA2-210, Transcript of high mobility group AT-hook 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA2, Length 8,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-210ENST00000541363 PELP1Q8IZL8 1130 aaKnown RBP25.39■■□□□ 1.65
HMGA2-210ENST00000541363 DCAF8L2P0C7V8 631 aa25.36■■□□□ 1.65
HMGA2-210ENST00000541363 ERICH6Q7L0X2 663 aa24.41■■□□□ 1.5
HMGA2-210ENST00000541363 CCER1Q8TC90 406 aaPredicted RBP24.22■■□□□ 1.47
HMGA2-210ENST00000541363 SUPT5HO00267 1087 aaKnown RBP23.98■■□□□ 1.43
HMGA2-210ENST00000541363 APLP2Q06481 763 aa23.91■■□□□ 1.42
HMGA2-210ENST00000541363 EHMT2Q96KQ7 1210 aa23.84■■□□□ 1.41
HMGA2-210ENST00000541363 MYT1Q01538 1121 aa23.74■■□□□ 1.39
HMGA2-210ENST00000541363 FAM9AQ8IZU1 332 aaPredicted RBP23.73■■□□□ 1.39
HMGA2-210ENST00000541363 CENPBP07199 599 aaPredicted RBP23.64■■□□□ 1.38
HMGA2-210ENST00000541363 NEFLP07196 543 aa23.38■■□□□ 1.33
HMGA2-210ENST00000541363 YTHDC1Q96MU7 727 aaKnown RBP23.21■■□□□ 1.31
HMGA2-210ENST00000541363 DAXXQ9UER7 740 aaPredicted RBP23.18■■□□□ 1.3
HMGA2-210ENST00000541363 TTBK1Q5TCY1 1321 aaPredicted RBP23.15■■□□□ 1.3
HMGA2-210ENST00000541363 PCGF6Q9BYE7 350 aa23.13■■□□□ 1.29
HMGA2-210ENST00000541363 SHROOM4Q9ULL8 1493 aa23.12■■□□□ 1.29
HMGA2-210ENST00000541363 ZEB1P37275 1124 aaPredicted RBP23.08■■□□□ 1.29
HMGA2-210ENST00000541363 ATP1B4Q9UN42 357 aaPredicted RBP22.84■■□□□ 1.25
HMGA2-210ENST00000541363 RANGAP1P46060 587 aaPredicted RBP22.73■■□□□ 1.23
HMGA2-210ENST00000541363 ZNF316A6NFI3 1004 aaPredicted RBP22.53■■□□□ 1.2
HMGA2-210ENST00000541363 RTL5Q5HYW3 569 aaPredicted RBP22.49■■□□□ 1.19
HMGA2-210ENST00000541363 POLR3GLQ9BT43 218 aa22.32■■□□□ 1.16
HMGA2-210ENST00000541363 UBTFP17480 764 aaKnown RBP22.3■■□□□ 1.16
HMGA2-210ENST00000541363 CLSPNQ9HAW4 1339 aa22.29■■□□□ 1.16
HMGA2-210ENST00000541363 MYT1LQ9UL68 1186 aa22.23■■□□□ 1.15
HMGA2-210ENST00000541363 TRIM41Q8WV44 630 aa22.21■■□□□ 1.15
HMGA2-210ENST00000541363 SLC4A1APQ9BWU0 796 aaKnown RBP22.1■■□□□ 1.13
HMGA2-210ENST00000541363 CNGB1Q14028 1251 aaPredicted RBP21.99■■□□□ 1.11
HMGA2-210ENST00000541363 ZBTB47Q9UFB7 747 aaPredicted RBP21.9■■□□□ 1.1
HMGA2-210ENST00000541363 CHIC1Q5VXU3 224 aa21.86■■□□□ 1.09
HMGA2-210ENST00000541363 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.84■■□□□ 1.09
HMGA2-210ENST00000541363 HNRNPUL2Q1KMD3 747 aaKnown RBP21.84■■□□□ 1.09
HMGA2-210ENST00000541363 NISCHQ9Y2I1 1504 aa21.82■■□□□ 1.08
HMGA2-210ENST00000541363 ITGAEP38570 1179 aa21.81■■□□□ 1.08
HMGA2-210ENST00000541363 PPARGC1BQ86YN6 1023 aaKnown RBP21.79■■□□□ 1.08
HMGA2-210ENST00000541363 TRIM26Q12899 539 aaPredicted RBP21.76■■□□□ 1.07
HMGA2-210ENST00000541363 HRCP23327 699 aa21.7■■□□□ 1.06
HMGA2-210ENST00000541363 CDK11AQ9UQ88 783 aaPredicted RBP21.62■■□□□ 1.05
HMGA2-210ENST00000541363 GLIPR1L2Q4G1C9 344 aa21.57■■□□□ 1.04
HMGA2-210ENST00000541363 ANP32BQ92688 251 aaKnown RBP21.56■■□□□ 1.04
HMGA2-210ENST00000541363 SLC24A1O60721 1099 aa21.53■■□□□ 1.04
HMGA2-210ENST00000541363 CANXP27824 592 aaKnown RBP21.48■■□□□ 1.03
HMGA2-210ENST00000541363 EIF5BO60841 1220 aaKnown RBP21.48■■□□□ 1.03
HMGA2-210ENST00000541363 BCL11AQ9H165 835 aa21.46■■□□□ 1.03
HMGA2-210ENST00000541363 DIEXFQ68CQ4 756 aaKnown RBP21.43■■□□□ 1.02
HMGA2-210ENST00000541363 BCANQ96GW7 911 aa21.39■■□□□ 1.01
HMGA2-210ENST00000541363 ANP32AP39687 249 aaKnown RBP21.38■■□□□ 1.01
HMGA2-210ENST00000541363 NEFMP07197 916 aa21.35■■□□□ 1.01
HMGA2-210ENST00000541363 ANP32CO43423 234 aa21.27■■□□□ 1
HMGA2-210ENST00000541363 HSP90AA1P07900 732 aaKnown RBP21.25■□□□□ 0.99
HMGA2-210ENST00000541363 TRIM52Q96A61 297 aa21.22■□□□□ 0.99
HMGA2-210ENST00000541363 FAM50AQ14320 339 aaKnown RBP21.16■□□□□ 0.98
HMGA2-210ENST00000541363 CDK11BP21127 795 aaKnown RBP21.15■□□□□ 0.98
HMGA2-210ENST00000541363 NPM2Q86SE8 214 aaKnown RBP21.14■□□□□ 0.98
HMGA2-210ENST00000541363 GTF3C3Q9Y5Q9 886 aa21.13■□□□□ 0.97
HMGA2-210ENST00000541363 NEUROD1Q13562 356 aa21.11■□□□□ 0.97
HMGA2-210ENST00000541363 UPF2Q9HAU5 1272 aaKnown RBP21.08■□□□□ 0.97
HMGA2-210ENST00000541363 ZNF326Q5BKZ1 582 aaKnown RBP21.06■□□□□ 0.96
HMGA2-210ENST00000541363 TNNT2P45379 298 aaPredicted RBP20.87■□□□□ 0.93
HMGA2-210ENST00000541363 LOC105371045A0A1W2PR82 267 aa20.81■□□□□ 0.92
HMGA2-210ENST00000541363 ARXQ96QS3 562 aa20.79■□□□□ 0.92
HMGA2-210ENST00000541363 NBR1Q14596 966 aa20.72■□□□□ 0.91
HMGA2-210ENST00000541363 TRIM44Q96DX7 344 aaPredicted RBP20.67■□□□□ 0.9
HMGA2-210ENST00000541363 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.64■□□□□ 0.89
HMGA2-210ENST00000541363 NCLP19338 710 aaKnown RBP20.63■□□□□ 0.89
HMGA2-210ENST00000541363 FKBP8Q14318 412 aa20.6■□□□□ 0.89
HMGA2-210ENST00000541363 ACIN1Q9UKV3 1341 aaKnown RBP20.57■□□□□ 0.88
HMGA2-210ENST00000541363 MYH16Q9H6N6 1097 aa20.54■□□□□ 0.88
HMGA2-210ENST00000541363 ESF1Q9H501 851 aaKnown RBP20.54■□□□□ 0.88
HMGA2-210ENST00000541363 ANP32EQ9BTT0 268 aa20.53■□□□□ 0.88
HMGA2-210ENST00000541363 ZRSR1Q15695 479 aaKnown RBP20.52■□□□□ 0.88
HMGA2-210ENST00000541363 CCDC136Q96JN2 1154 aa20.49■□□□□ 0.87
HMGA2-210ENST00000541363 GOLGA6L22H0YM25 854 aa20.48■□□□□ 0.87
HMGA2-210ENST00000541363 DNTTIP2Q5QJE6 756 aaKnown RBP20.48■□□□□ 0.87
HMGA2-210ENST00000541363 STAG3Q9UJ98 1225 aa20.47■□□□□ 0.87
HMGA2-210ENST00000541363 PTMAP06454 111 aaKnown RBP20.47■□□□□ 0.87
HMGA2-210ENST00000541363 BECN1Q14457 450 aa20.46■□□□□ 0.87
HMGA2-210ENST00000541363 DDRGK1Q96HY6 314 aa20.42■□□□□ 0.86
HMGA2-210ENST00000541363 HNRNPUQ00839 825 aaKnown RBP eCLIP20.41■□□□□ 0.866e-6■□□□□ 8.3
HMGA2-210ENST00000541363 TULP1O00294 542 aaPredicted RBP20.41■□□□□ 0.86
HMGA2-210ENST00000541363 FBLN2P98095 1184 aa20.37■□□□□ 0.85
HMGA2-210ENST00000541363 FAM9BQ8IZU0 186 aa20.37■□□□□ 0.85
HMGA2-210ENST00000541363 SALL2Q9Y467 1007 aaPredicted RBP20.36■□□□□ 0.85
HMGA2-210ENST00000541363 WDR43Q15061 677 aaKnown RBP eCLIP20.36■□□□□ 0.85
HMGA2-210ENST00000541363 CHGAP10645 457 aaKnown RBP20.33■□□□□ 0.85
HMGA2-210ENST00000541363 A0A0G2JS52 829 aa20.32■□□□□ 0.84
HMGA2-210ENST00000541363 GOLGA6L6A8MZA4 724 aa20.32■□□□□ 0.84
HMGA2-210ENST00000541363 SCAF1Q9H7N4 1312 aaKnown RBP20.31■□□□□ 0.84
HMGA2-210ENST00000541363 TMC1Q8TDI8 760 aa20.31■□□□□ 0.84
HMGA2-210ENST00000541363 NAP1L5Q96NT1 182 aaPredicted RBP20.28■□□□□ 0.84
HMGA2-210ENST00000541363 CASC1Q6TDU7 716 aa20.27■□□□□ 0.84
HMGA2-210ENST00000541363 ZNF777Q9ULD5 760 aaPredicted RBP20.27■□□□□ 0.84
HMGA2-210ENST00000541363 PLPPR3Q6T4P5 718 aa20.26■□□□□ 0.83
HMGA2-210ENST00000541363 TONSLQ96HA7 1378 aa20.26■□□□□ 0.83
HMGA2-210ENST00000541363 ERICH6BQ5W0A0 696 aa20.24■□□□□ 0.83
HMGA2-210ENST00000541363 NRDCO43847 1150 aa20.18■□□□□ 0.82
HMGA2-210ENST00000541363 TPRNQ4KMQ1 711 aa20.18■□□□□ 0.82
HMGA2-210ENST00000541363 ARID3CA6NKF2 412 aa20.13■□□□□ 0.81
HMGA2-210ENST00000541363 NCBP3Q53F19 620 aaKnown RBP20.13■□□□□ 0.81
HMGA2-210ENST00000541363 CHAF1AQ13111 956 aaPredicted RBP20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms