RNA–Protein interactions for RNA: ENST00000533464.5

PHRF1-205, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-205ENST00000533464 Q5VSD8 79 aa10.31□□□□□ -0.76
PHRF1-205ENST00000533464 MYO15AQ9UKN7 3530 aa10.31□□□□□ -0.76
PHRF1-205ENST00000533464 CSAG1Q6PB30 78 aa10.26□□□□□ -0.77
PHRF1-205ENST00000533464 NOTCH2NLQ7Z3S9 236 aa10.24□□□□□ -0.77
PHRF1-205ENST00000533464 S4R3F8 94 aa10.23□□□□□ -0.77
PHRF1-205ENST00000533464 DMAC1Q96GE9 116 aa10.23□□□□□ -0.77
PHRF1-205ENST00000533464 CAMK2N1Q7Z7J9 78 aa10.16□□□□□ -0.78
PHRF1-205ENST00000533464 PRAC1Q96KF2 57 aa10.12□□□□□ -0.79
PHRF1-205ENST00000533464 KRTAP13-1Q8IUC0 172 aa10.12□□□□□ -0.79
PHRF1-205ENST00000533464 M0R2T5 61 aa10.11□□□□□ -0.79
PHRF1-205ENST00000533464 SEC61BP60468 96 aaKnown RBP10.09□□□□□ -0.79
PHRF1-205ENST00000533464 ASB16-AS1Q495Z4 193 aa10.08□□□□□ -0.8
PHRF1-205ENST00000533464 MXRA5Q9NR99 2828 aa10.05□□□□□ -0.8
PHRF1-205ENST00000533464 R4GN34 69 aa10.04□□□□□ -0.8
PHRF1-205ENST00000533464 KRTAP13-2Q52LG2 175 aa10.03□□□□□ -0.8
PHRF1-205ENST00000533464 RELNP78509 3460 aa10.03□□□□□ -0.8
PHRF1-205ENST00000533464 DCHS1Q96JQ0 3298 aa9.99□□□□□ -0.81
PHRF1-205ENST00000533464 RPL37P61927 97 aaKnown RBP9.96□□□□□ -0.81
PHRF1-205ENST00000533464 H1FX-AS1Q4G0G2 97 aa9.96□□□□□ -0.81
PHRF1-205ENST00000533464 RPS29P62273 56 aaKnown RBP9.95□□□□□ -0.82
PHRF1-205ENST00000533464 TENM3Q9P273 2699 aa9.95□□□□□ -0.82
PHRF1-205ENST00000533464 WDFY3Q8IZQ1 3526 aa9.92□□□□□ -0.82
PHRF1-205ENST00000533464 LUZP6Q538Z0 58 aa9.9□□□□□ -0.82
PHRF1-205ENST00000533464 SPATA8Q6RVD6 105 aa9.9□□□□□ -0.83
PHRF1-205ENST00000533464 CELSR1Q9NYQ6 3014 aa9.89□□□□□ -0.83
PHRF1-205ENST00000533464 M0QZ58 72 aa9.87□□□□□ -0.83
PHRF1-205ENST00000533464 TENM1Q9UKZ4 2725 aa9.85□□□□□ -0.83
PHRF1-205ENST00000533464 ADM2Q7Z4H4 148 aa9.83□□□□□ -0.84
PHRF1-205ENST00000533464 ROMO1P60602 79 aa9.82□□□□□ -0.84
PHRF1-205ENST00000533464 LAMA5O15230 3695 aa9.81□□□□□ -0.84
PHRF1-205ENST00000533464 ASPMQ8IZT6 3477 aa9.77□□□□□ -0.85
PHRF1-205ENST00000533464 KRTAP21-3Q3LHN1 58 aa9.76□□□□□ -0.85
PHRF1-205ENST00000533464 ZFHX4Q86UP3 3567 aa9.73□□□□□ -0.85
PHRF1-205ENST00000533464 MUC3AQ02505 3323 aa9.71□□□□□ -0.86
PHRF1-205ENST00000533464 PKD1L1Q8TDX9 2849 aa9.71□□□□□ -0.86
PHRF1-205ENST00000533464 TENM2Q9NT68 2774 aa9.67□□□□□ -0.86
PHRF1-205ENST00000533464 A8MU10 97 aa9.66□□□□□ -0.86
PHRF1-205ENST00000533464 KRTAP1-4P0C5Y4 121 aa9.63□□□□□ -0.87
PHRF1-205ENST00000533464 A8MUU9 505 aa9.61□□□□□ -0.87
PHRF1-205ENST00000533464 A6NN06 94 aa9.61□□□□□ -0.87
PHRF1-205ENST00000533464 PDZD2O15018 2839 aa9.6□□□□□ -0.87
PHRF1-205ENST00000533464 C20orf166-AS1Q96NR2 134 aa9.58□□□□□ -0.88
PHRF1-205ENST00000533464 DMDP11532 3685 aa9.57□□□□□ -0.88
PHRF1-205ENST00000533464 FBN1P35555 2871 aaKnown RBP9.55□□□□□ -0.88
PHRF1-205ENST00000533464 TGP01266 2768 aa9.53□□□□□ -0.88
PHRF1-205ENST00000533464 VWFP04275 2813 aa9.51□□□□□ -0.89
PHRF1-205ENST00000533464 PLAC4Q8WY50 150 aa9.5□□□□□ -0.89
PHRF1-205ENST00000533464 H3BS24 57 aa9.44□□□□□ -0.9
PHRF1-205ENST00000533464 CSMD1Q96PZ7 3565 aa9.44□□□□□ -0.9
PHRF1-205ENST00000533464 KRTAP25-1Q3LHN0 102 aa9.42□□□□□ -0.9
PHRF1-205ENST00000533464 OTOGQ6ZRI0 2925 aa9.41□□□□□ -0.9
PHRF1-205ENST00000533464 SMG1Q96Q15 3661 aaKnown RBP9.39□□□□□ -0.91
PHRF1-205ENST00000533464 XP32Q5T750 250 aa9.37□□□□□ -0.91
PHRF1-205ENST00000533464 NBPF19A0A087WUL8 3843 aa9.35□□□□□ -0.91
PHRF1-205ENST00000533464 KRTAP16-1A8MUX0 517 aa9.34□□□□□ -0.91
PHRF1-205ENST00000533464 A0A0A0MQY5 61 aa9.32□□□□□ -0.92
PHRF1-205ENST00000533464 ZFHX3Q15911 3703 aa9.3□□□□□ -0.92
PHRF1-205ENST00000533464 SVEP1Q4LDE5 3571 aa9.24□□□□□ -0.93
PHRF1-205ENST00000533464 SRRM2Q9UQ35 2752 aaKnown RBP9.19□□□□□ -0.94
PHRF1-205ENST00000533464 CUBNO60494 3623 aa9.19□□□□□ -0.94
PHRF1-205ENST00000533464 TPRXLQ17RH7 258 aa9.15□□□□□ -0.94
PHRF1-205ENST00000533464 H0YAA0 97 aa9.14□□□□□ -0.95
PHRF1-205ENST00000533464 CSMD2Q7Z408 3487 aa9.13□□□□□ -0.95
PHRF1-205ENST00000533464 KRTAP13-3Q3SY46 172 aa9.11□□□□□ -0.95
PHRF1-205ENST00000533464 TNP1P09430 55 aa9.09□□□□□ -0.95
PHRF1-205ENST00000533464 A0A1B0GVY2 172 aa9.07□□□□□ -0.96
PHRF1-205ENST00000533464 FBN3Q75N90 2809 aa9.03□□□□□ -0.96
PHRF1-205ENST00000533464 KRTAP10-8P60410 259 aa9.02□□□□□ -0.96
PHRF1-205ENST00000533464 SPENQ96T58 3664 aaKnown RBP9.01□□□□□ -0.97
PHRF1-205ENST00000533464 C10orf95Q9H7T3 257 aa9□□□□□ -0.97
PHRF1-205ENST00000533464 NDUFAF8A1L188 74 aa8.99□□□□□ -0.97
PHRF1-205ENST00000533464 P0C880 135 aa8.98□□□□□ -0.97
PHRF1-205ENST00000533464 ANK3Q12955 4377 aaKnown RBP8.93□□□□□ -0.98
PHRF1-205ENST00000533464 TRRAPQ9Y4A5 3859 aa8.91□□□□□ -0.98
PHRF1-205ENST00000533464 PP632Q6XCG6 107 aa8.83□□□□□ -1
PHRF1-205ENST00000533464 MEGF8Q7Z7M0 2845 aa8.82□□□□□ -1
PHRF1-205ENST00000533464 COL7A1Q02388 2944 aa8.81□□□□□ -1
PHRF1-205ENST00000533464 KRTAP10-10P60014 251 aa8.77□□□□□ -1.01
PHRF1-205ENST00000533464 BSNQ9UPA5 3926 aa8.75□□□□□ -1.01
PHRF1-205ENST00000533464 KRTAP3-1Q9BYR8 98 aa8.67□□□□□ -1.02
PHRF1-205ENST00000533464 KRTAP12-2P59991 146 aa8.59□□□□□ -1.03
PHRF1-205ENST00000533464 PRO2289Q9P1D8 64 aa8.48□□□□□ -1.05
PHRF1-205ENST00000533464 KRTAP12-1P59990 96 aa8.47□□□□□ -1.05
PHRF1-205ENST00000533464 VPS13CQ709C8 3753 aa8.44□□□□□ -1.06
PHRF1-205ENST00000533464 KRTAP10-6P60371 365 aaPredicted RBP8.37□□□□□ -1.07
PHRF1-205ENST00000533464 MT1HL1P0DM35 61 aa8.36□□□□□ -1.07
PHRF1-205ENST00000533464 KRTAP13-4Q3LI77 160 aa8.36□□□□□ -1.07
PHRF1-205ENST00000533464 HUWE1Q7Z6Z7 4374 aaKnown RBP8.34□□□□□ -1.07
PHRF1-205ENST00000533464 KRTAP10-4P60372 401 aaPredicted RBP8.26□□□□□ -1.09
PHRF1-205ENST00000533464 ZNF469Q96JG9 3925 aaPredicted RBP8.19□□□□□ -1.1
PHRF1-205ENST00000533464 CSMD3Q7Z407 3707 aa8.15□□□□□ -1.1
PHRF1-205ENST00000533464 KRTAP3-3Q9BYR6 98 aa8.15□□□□□ -1.11
PHRF1-205ENST00000533464 KRTAP3-2Q9BYR7 98 aa8.12□□□□□ -1.11
PHRF1-205ENST00000533464 KRTAP4-5Q9BYR2 181 aa8.11□□□□□ -1.11
PHRF1-205ENST00000533464 DNAH9Q9NYC9 4486 aa7.98□□□□□ -1.13
PHRF1-205ENST00000533464 AKAP9Q99996 3911 aa7.92□□□□□ -1.14
PHRF1-205ENST00000533464 DNAH5Q8TE73 4624 aa7.91□□□□□ -1.14
PHRF1-205ENST00000533464 KRTAP15-1Q3LI76 137 aa7.84□□□□□ -1.15
PHRF1-205ENST00000533464 PLECQ15149 4684 aaKnown RBP7.82□□□□□ -1.16
PHRF1-205ENST00000533464 DNHD1Q96M86 4753 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms