RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 NOTCH2NLQ7Z3S9 236 aa9.76□□□□□ -0.85
TCOF1-206ENST00000445265 RBM12B-AS1Q9P1G2 102 aa9.76□□□□□ -0.85
TCOF1-206ENST00000445265 CSMD1Q96PZ7 3565 aa9.74□□□□□ -0.85
TCOF1-206ENST00000445265 KRTAP10-1P60331 282 aa9.74□□□□□ -0.85
TCOF1-206ENST00000445265 ASB16-AS1Q495Z4 193 aa9.73□□□□□ -0.85
TCOF1-206ENST00000445265 A0A1B0GU33 70 aa9.7□□□□□ -0.86
TCOF1-206ENST00000445265 CELSR1Q9NYQ6 3014 aa9.68□□□□□ -0.86
TCOF1-206ENST00000445265 TENM3Q9P273 2699 aa9.62□□□□□ -0.87
TCOF1-206ENST00000445265 PRAC1Q96KF2 57 aa9.58□□□□□ -0.88
TCOF1-206ENST00000445265 SPINT4Q6UDR6 99 aa9.57□□□□□ -0.88
TCOF1-206ENST00000445265 CRIPTQ9P021 101 aa9.56□□□□□ -0.88
TCOF1-206ENST00000445265 PDZD2O15018 2839 aa9.56□□□□□ -0.88
TCOF1-206ENST00000445265 A0A0D9SG42 100 aa9.54□□□□□ -0.88
TCOF1-206ENST00000445265 LINC01554Q52M75 96 aa9.54□□□□□ -0.88
TCOF1-206ENST00000445265 TENM1Q9UKZ4 2725 aa9.53□□□□□ -0.88
TCOF1-206ENST00000445265 KRTAP13-2Q52LG2 175 aa9.51□□□□□ -0.89
TCOF1-206ENST00000445265 TENM4Q6N022 2769 aa9.5□□□□□ -0.89
TCOF1-206ENST00000445265 SVEP1Q4LDE5 3571 aa9.49□□□□□ -0.89
TCOF1-206ENST00000445265 DMBT1Q9UGM3 2413 aaPredicted RBP9.49□□□□□ -0.89
TCOF1-206ENST00000445265 SPATA8Q6RVD6 105 aa9.49□□□□□ -0.89
TCOF1-206ENST00000445265 A6NN06 94 aa9.47□□□□□ -0.89
TCOF1-206ENST00000445265 RPS29P62273 56 aaKnown RBP9.46□□□□□ -0.89
TCOF1-206ENST00000445265 VWFP04275 2813 aa9.46□□□□□ -0.89
TCOF1-206ENST00000445265 A8MU10 97 aa9.45□□□□□ -0.9
TCOF1-206ENST00000445265 CSAG1Q6PB30 78 aa9.42□□□□□ -0.9
TCOF1-206ENST00000445265 J3QL48 77 aa9.39□□□□□ -0.91
TCOF1-206ENST00000445265 Q6ZSA8 131 aa9.39□□□□□ -0.91
TCOF1-206ENST00000445265 SPENQ96T58 3664 aaKnown RBP9.38□□□□□ -0.91
TCOF1-206ENST00000445265 BSNQ9UPA5 3926 aa9.38□□□□□ -0.91
TCOF1-206ENST00000445265 H1FX-AS1Q4G0G2 97 aa9.37□□□□□ -0.91
TCOF1-206ENST00000445265 COX6B2Q6YFQ2 88 aa9.37□□□□□ -0.91
TCOF1-206ENST00000445265 S4R3F8 94 aa9.37□□□□□ -0.91
TCOF1-206ENST00000445265 OTOGQ6ZRI0 2925 aa9.28□□□□□ -0.92
TCOF1-206ENST00000445265 RPL37P61927 97 aaKnown RBP9.28□□□□□ -0.92
TCOF1-206ENST00000445265 Q5VSD8 79 aa9.27□□□□□ -0.93
TCOF1-206ENST00000445265 KRTAP1-4P0C5Y4 121 aa9.21□□□□□ -0.94
TCOF1-206ENST00000445265 ROMO1P60602 79 aa9.19□□□□□ -0.94
TCOF1-206ENST00000445265 FBN1P35555 2871 aaKnown RBP9.18□□□□□ -0.94
TCOF1-206ENST00000445265 NBPF19A0A087WUL8 3843 aa9.16□□□□□ -0.94
TCOF1-206ENST00000445265 A8MUU9 505 aa9.16□□□□□ -0.94
TCOF1-206ENST00000445265 C20orf166-AS1Q96NR2 134 aa9.14□□□□□ -0.95
TCOF1-206ENST00000445265 PKD1L1Q8TDX9 2849 aa9.13□□□□□ -0.95
TCOF1-206ENST00000445265 ADM2Q7Z4H4 148 aa9.12□□□□□ -0.95
TCOF1-206ENST00000445265 FLG2Q5D862 2391 aaPredicted RBP9.12□□□□□ -0.95
TCOF1-206ENST00000445265 CUBNO60494 3623 aa9.12□□□□□ -0.95
TCOF1-206ENST00000445265 KRTAP16-1A8MUX0 517 aa9.1□□□□□ -0.95
TCOF1-206ENST00000445265 ANK3Q12955 4377 aaKnown RBP9.09□□□□□ -0.95
TCOF1-206ENST00000445265 CSMD2Q7Z408 3487 aa9.07□□□□□ -0.96
TCOF1-206ENST00000445265 KRTAP13-3Q3SY46 172 aa9.07□□□□□ -0.96
TCOF1-206ENST00000445265 TGP01266 2768 aa9.06□□□□□ -0.96
TCOF1-206ENST00000445265 R4GN34 69 aa9.06□□□□□ -0.96
TCOF1-206ENST00000445265 SEC61BP60468 96 aaKnown RBP9.04□□□□□ -0.96
TCOF1-206ENST00000445265 KRTAP25-1Q3LHN0 102 aa9.02□□□□□ -0.97
TCOF1-206ENST00000445265 CAMK2N1Q7Z7J9 78 aa9.02□□□□□ -0.97
TCOF1-206ENST00000445265 KRTAP21-3Q3LHN1 58 aa9□□□□□ -0.97
TCOF1-206ENST00000445265 H3BS24 57 aa8.98□□□□□ -0.97
TCOF1-206ENST00000445265 M0QZ58 72 aa8.94□□□□□ -0.98
TCOF1-206ENST00000445265 TENM2Q9NT68 2774 aa8.93□□□□□ -0.98
TCOF1-206ENST00000445265 TRRAPQ9Y4A5 3859 aa8.89□□□□□ -0.99
TCOF1-206ENST00000445265 LUZP6Q538Z0 58 aa8.89□□□□□ -0.99
TCOF1-206ENST00000445265 ZFHX3Q15911 3703 aa8.86□□□□□ -0.99
TCOF1-206ENST00000445265 H0YAA0 97 aa8.84□□□□□ -0.99
TCOF1-206ENST00000445265 VPS13CQ709C8 3753 aa8.79□□□□□ -1
TCOF1-206ENST00000445265 SRRM2Q9UQ35 2752 aaKnown RBP8.75□□□□□ -1.01
TCOF1-206ENST00000445265 XP32Q5T750 250 aa8.75□□□□□ -1.01
TCOF1-206ENST00000445265 FBN3Q75N90 2809 aa8.71□□□□□ -1.01
TCOF1-206ENST00000445265 M0R2T5 61 aa8.67□□□□□ -1.02
TCOF1-206ENST00000445265 MEGF8Q7Z7M0 2845 aa8.64□□□□□ -1.03
TCOF1-206ENST00000445265 ZNF469Q96JG9 3925 aaPredicted RBP8.58□□□□□ -1.04
TCOF1-206ENST00000445265 A0A1B0GVY2 172 aa8.58□□□□□ -1.04
TCOF1-206ENST00000445265 KRTAP10-8P60410 259 aa8.54□□□□□ -1.04
TCOF1-206ENST00000445265 TPRXLQ17RH7 258 aa8.52□□□□□ -1.05
TCOF1-206ENST00000445265 AKAP9Q99996 3911 aa8.51□□□□□ -1.05
TCOF1-206ENST00000445265 P0C880 135 aa8.48□□□□□ -1.05
TCOF1-206ENST00000445265 A0A0A0MQY5 61 aa8.48□□□□□ -1.05
TCOF1-206ENST00000445265 KRTAP3-1Q9BYR8 98 aa8.47□□□□□ -1.05
TCOF1-206ENST00000445265 C10orf95Q9H7T3 257 aa8.45□□□□□ -1.06
TCOF1-206ENST00000445265 HUWE1Q7Z6Z7 4374 aaKnown RBP8.45□□□□□ -1.06
TCOF1-206ENST00000445265 NDUFAF8A1L188 74 aa8.43□□□□□ -1.06
TCOF1-206ENST00000445265 PLAC4Q8WY50 150 aa8.43□□□□□ -1.06
TCOF1-206ENST00000445265 COL7A1Q02388 2944 aa8.28□□□□□ -1.08
TCOF1-206ENST00000445265 PP632Q6XCG6 107 aa8.28□□□□□ -1.08
TCOF1-206ENST00000445265 TNP1P09430 55 aa8.28□□□□□ -1.08
TCOF1-206ENST00000445265 KRTAP12-2P59991 146 aa8.2□□□□□ -1.1
TCOF1-206ENST00000445265 KRTAP10-6P60371 365 aaPredicted RBP8.19□□□□□ -1.1
TCOF1-206ENST00000445265 KRTAP12-1P59990 96 aa8.14□□□□□ -1.11
TCOF1-206ENST00000445265 KRTAP13-4Q3LI77 160 aa8.12□□□□□ -1.11
TCOF1-206ENST00000445265 DNAH9Q9NYC9 4486 aa8.12□□□□□ -1.11
TCOF1-206ENST00000445265 KRTAP10-4P60372 401 aaPredicted RBP8.11□□□□□ -1.11
TCOF1-206ENST00000445265 CSMD3Q7Z407 3707 aa8.09□□□□□ -1.11
TCOF1-206ENST00000445265 KRTAP3-3Q9BYR6 98 aa8.01□□□□□ -1.13
TCOF1-206ENST00000445265 KRTAP3-2Q9BYR7 98 aa7.99□□□□□ -1.13
TCOF1-206ENST00000445265 PLECQ15149 4684 aaKnown RBP7.98□□□□□ -1.13
TCOF1-206ENST00000445265 DNAH1Q9P2D7 4330 aa7.96□□□□□ -1.14
TCOF1-206ENST00000445265 MT1HL1P0DM35 61 aa7.95□□□□□ -1.14
TCOF1-206ENST00000445265 DNAH10Q8IVF4 4471 aa7.93□□□□□ -1.14
TCOF1-206ENST00000445265 VPS13DQ5THJ4 4388 aa7.87□□□□□ -1.15
TCOF1-206ENST00000445265 DNAH17Q9UFH2 4485 aa7.84□□□□□ -1.15
TCOF1-206ENST00000445265 ALMS1Q8TCU4 4167 aa7.82□□□□□ -1.16
TCOF1-206ENST00000445265 DNAH11Q96DT5 4516 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms