RNA–Protein interactions for RNA: ENST00000392455.7

CCDC50-201, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CCDC50, Length 8,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-201ENST00000392455 KALRNO60229 2985 aa8.04□□□□□ -1.12
CCDC50-201ENST00000392455 KRTAP13-2Q52LG2 175 aa8.04□□□□□ -1.12
CCDC50-201ENST00000392455 REV3LO60673 3130 aa8.03□□□□□ -1.12
CCDC50-201ENST00000392455 KRTAP7-1Q8IUC3 87 aa8□□□□□ -1.13
CCDC50-201ENST00000392455 TENM1Q9UKZ4 2725 aa7.99□□□□□ -1.13
CCDC50-201ENST00000392455 LRBAP50851 2863 aa7.99□□□□□ -1.13
CCDC50-201ENST00000392455 COL6A3P12111 3177 aa7.98□□□□□ -1.13
CCDC50-201ENST00000392455 KRTAP13-1Q8IUC0 172 aa7.96□□□□□ -1.14
CCDC50-201ENST00000392455 LAMA1P25391 3075 aa7.93□□□□□ -1.14
CCDC50-201ENST00000392455 CRYBG3Q68DQ2 2970 aa7.93□□□□□ -1.14
CCDC50-201ENST00000392455 SZT2Q5T011 3432 aa7.91□□□□□ -1.14
CCDC50-201ENST00000392455 FLNCQ14315 2725 aa7.9□□□□□ -1.14
CCDC50-201ENST00000392455 VCANP13611 3396 aa7.89□□□□□ -1.15
CCDC50-201ENST00000392455 USP34Q70CQ2 3546 aa7.85□□□□□ -1.15
CCDC50-201ENST00000392455 NF1P21359 2839 aa7.85□□□□□ -1.15
CCDC50-201ENST00000392455 FRYLO94915 3013 aa7.84□□□□□ -1.15
CCDC50-201ENST00000392455 H0YAA0 97 aa7.82□□□□□ -1.16
CCDC50-201ENST00000392455 TPRXLQ17RH7 258 aa7.82□□□□□ -1.16
CCDC50-201ENST00000392455 CFAP47Q6ZTR5 3102 aa7.8□□□□□ -1.16
CCDC50-201ENST00000392455 HIVEP1P15822 2718 aa7.8□□□□□ -1.16
CCDC50-201ENST00000392455 TGP01266 2768 aa7.8□□□□□ -1.16
CCDC50-201ENST00000392455 DMXL2Q8TDJ6 3036 aa7.78□□□□□ -1.16
CCDC50-201ENST00000392455 ASH1LQ9NR48 2969 aaKnown RBP7.76□□□□□ -1.17
CCDC50-201ENST00000392455 SPEGQ15772 3267 aa7.76□□□□□ -1.17
CCDC50-201ENST00000392455 A0A1B0GVY2 172 aa7.76□□□□□ -1.17
CCDC50-201ENST00000392455 TENM4Q6N022 2769 aa7.76□□□□□ -1.17
CCDC50-201ENST00000392455 BOD1L1Q8NFC6 3051 aa7.75□□□□□ -1.17
CCDC50-201ENST00000392455 SPTBN5Q9NRC6 3674 aaKnown RBP7.74□□□□□ -1.17
CCDC50-201ENST00000392455 KRTAP10-10P60014 251 aa7.72□□□□□ -1.17
CCDC50-201ENST00000392455 XP32Q5T750 250 aa7.72□□□□□ -1.17
CCDC50-201ENST00000392455 NIPBLQ6KC79 2804 aaeCLIP7.72□□□□□ -1.17
CCDC50-201ENST00000392455 PDZD2O15018 2839 aa7.69□□□□□ -1.18
CCDC50-201ENST00000392455 TACC2O95359 2948 aa7.67□□□□□ -1.18
CCDC50-201ENST00000392455 ADGRG4Q8IZF6 3080 aa7.63□□□□□ -1.19
CCDC50-201ENST00000392455 ATMQ13315 3056 aa7.63□□□□□ -1.19
CCDC50-201ENST00000392455 COL12A1Q99715 3063 aa7.63□□□□□ -1.19
CCDC50-201ENST00000392455 INE1O15225 51 aa7.62□□□□□ -1.19
CCDC50-201ENST00000392455 NBEAQ8NFP9 2946 aa7.6□□□□□ -1.19
CCDC50-201ENST00000392455 KRTAP13-4Q3LI77 160 aa7.57□□□□□ -1.2
CCDC50-201ENST00000392455 KRTAP1-4P0C5Y4 121 aa7.56□□□□□ -1.2
CCDC50-201ENST00000392455 CELSR2Q9HCU4 2923 aa7.55□□□□□ -1.2
CCDC50-201ENST00000392455 ZZEF1O43149 2961 aa7.53□□□□□ -1.2
CCDC50-201ENST00000392455 TNRC18O15417 2968 aaPredicted RBP7.47□□□□□ -1.21
CCDC50-201ENST00000392455 KRTAP12-2P59991 146 aa7.46□□□□□ -1.22
CCDC50-201ENST00000392455 EYSQ5T1H1 3165 aa7.43□□□□□ -1.22
CCDC50-201ENST00000392455 DCHS2Q6V1P9 2916 aa7.4□□□□□ -1.22
CCDC50-201ENST00000392455 KRTAP13-3Q3SY46 172 aa7.39□□□□□ -1.23
CCDC50-201ENST00000392455 WDFY3Q8IZQ1 3526 aa7.38□□□□□ -1.23
CCDC50-201ENST00000392455 MYO15AQ9UKN7 3530 aa7.38□□□□□ -1.23
CCDC50-201ENST00000392455 ASPMQ8IZT6 3477 aa7.37□□□□□ -1.23
CCDC50-201ENST00000392455 SRRM2Q9UQ35 2752 aaKnown RBP7.36□□□□□ -1.23
CCDC50-201ENST00000392455 NBPF19A0A087WUL8 3843 aa7.33□□□□□ -1.24
CCDC50-201ENST00000392455 DMXL1Q9Y485 3027 aa7.32□□□□□ -1.24
CCDC50-201ENST00000392455 CELSR1Q9NYQ6 3014 aa7.32□□□□□ -1.24
CCDC50-201ENST00000392455 KRTAP15-1Q3LI76 137 aa7.31□□□□□ -1.24
CCDC50-201ENST00000392455 TENM2Q9NT68 2774 aa7.3□□□□□ -1.24
CCDC50-201ENST00000392455 ZANQ9Y493 2812 aa7.28□□□□□ -1.24
CCDC50-201ENST00000392455 HRNRQ86YZ3 2850 aaPredicted RBP7.28□□□□□ -1.24
CCDC50-201ENST00000392455 LOC400499M0QZD8 3231 aa7.25□□□□□ -1.25
CCDC50-201ENST00000392455 FBN2P35556 2912 aa7.25□□□□□ -1.25
CCDC50-201ENST00000392455 DCHS1Q96JQ0 3298 aa7.19□□□□□ -1.26
CCDC50-201ENST00000392455 KRTAP12-1P59990 96 aa7.16□□□□□ -1.26
CCDC50-201ENST00000392455 PKD1L1Q8TDX9 2849 aa7.15□□□□□ -1.26
CCDC50-201ENST00000392455 VWFP04275 2813 aa7.15□□□□□ -1.26
CCDC50-201ENST00000392455 LAMA5O15230 3695 aa7.13□□□□□ -1.27
CCDC50-201ENST00000392455 MXRA5Q9NR99 2828 aa7.11□□□□□ -1.27
CCDC50-201ENST00000392455 CSMD1Q96PZ7 3565 aa7.08□□□□□ -1.28
CCDC50-201ENST00000392455 ZFHX4Q86UP3 3567 aa7.07□□□□□ -1.28
CCDC50-201ENST00000392455 RELNP78509 3460 aa7.03□□□□□ -1.28
CCDC50-201ENST00000392455 COL7A1Q02388 2944 aa7□□□□□ -1.29
CCDC50-201ENST00000392455 KRTAP23-1A1A580 65 aa6.95□□□□□ -1.3
CCDC50-201ENST00000392455 SPENQ96T58 3664 aaKnown RBP6.86□□□□□ -1.31
CCDC50-201ENST00000392455 KRTAP10-12P60413 245 aa6.84□□□□□ -1.31
CCDC50-201ENST00000392455 SMG1Q96Q15 3661 aaKnown RBP6.83□□□□□ -1.32
CCDC50-201ENST00000392455 MEGF8Q7Z7M0 2845 aa6.83□□□□□ -1.32
CCDC50-201ENST00000392455 ZFHX3Q15911 3703 aa6.83□□□□□ -1.32
CCDC50-201ENST00000392455 DMDP11532 3685 aa6.79□□□□□ -1.32
CCDC50-201ENST00000392455 KRTAP3-1Q9BYR8 98 aa6.76□□□□□ -1.33
CCDC50-201ENST00000392455 SVEP1Q4LDE5 3571 aa6.69□□□□□ -1.34
CCDC50-201ENST00000392455 KRTAP10-6P60371 365 aaPredicted RBP6.62□□□□□ -1.35
CCDC50-201ENST00000392455 FBN1P35555 2871 aaKnown RBP6.62□□□□□ -1.35
CCDC50-201ENST00000392455 KRTAP12-3P60328 96 aa6.6□□□□□ -1.35
CCDC50-201ENST00000392455 CRCT1Q9UGL9 99 aa6.6□□□□□ -1.35
CCDC50-201ENST00000392455 TRRAPQ9Y4A5 3859 aa6.58□□□□□ -1.36
CCDC50-201ENST00000392455 FBN3Q75N90 2809 aa6.58□□□□□ -1.36
CCDC50-201ENST00000392455 VPS13CQ709C8 3753 aa6.55□□□□□ -1.36
CCDC50-201ENST00000392455 CUBNO60494 3623 aa6.54□□□□□ -1.36
CCDC50-201ENST00000392455 ANK3Q12955 4377 aaKnown RBP6.53□□□□□ -1.36
CCDC50-201ENST00000392455 OTOGQ6ZRI0 2925 aa6.51□□□□□ -1.37
CCDC50-201ENST00000392455 BSNQ9UPA5 3926 aa6.48□□□□□ -1.37
CCDC50-201ENST00000392455 CSMD2Q7Z408 3487 aa6.46□□□□□ -1.38
CCDC50-201ENST00000392455 MUC3AQ02505 3323 aa6.39□□□□□ -1.39
CCDC50-201ENST00000392455 MT1HL1P0DM35 61 aa6.39□□□□□ -1.39
CCDC50-201ENST00000392455 KRTAP10-5P60370 271 aa6.34□□□□□ -1.39
CCDC50-201ENST00000392455 AKAP9Q99996 3911 aa6.34□□□□□ -1.4
CCDC50-201ENST00000392455 HUWE1Q7Z6Z7 4374 aaKnown RBP6.33□□□□□ -1.4
CCDC50-201ENST00000392455 KRTAP3-3Q9BYR6 98 aa6.33□□□□□ -1.4
CCDC50-201ENST00000392455 ALMS1Q8TCU4 4167 aa6.32□□□□□ -1.4
CCDC50-201ENST00000392455 KRTAP3-2Q9BYR7 98 aa6.3□□□□□ -1.4
CCDC50-201ENST00000392455 CSMD3Q7Z407 3707 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms