RNA–Protein interactions for RNA: ENST00000392455.7

CCDC50-201, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CCDC50, Length 8,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-201ENST00000392455 DCAF8L2P0C7V8 631 aa24.8■■□□□ 1.56
CCDC50-201ENST00000392455 PELP1Q8IZL8 1130 aaKnown RBP24.61■■□□□ 1.53
CCDC50-201ENST00000392455 CCER1Q8TC90 406 aaPredicted RBP23.39■■□□□ 1.34
CCDC50-201ENST00000392455 SUPT5HO00267 1087 aaKnown RBP23.37■■□□□ 1.33
CCDC50-201ENST00000392455 MYT1Q01538 1121 aa23.32■■□□□ 1.32
CCDC50-201ENST00000392455 ERICH6Q7L0X2 663 aa23.12■■□□□ 1.29
CCDC50-201ENST00000392455 EHMT2Q96KQ7 1210 aa23.06■■□□□ 1.28
CCDC50-201ENST00000392455 FAM9AQ8IZU1 332 aaPredicted RBP22.94■■□□□ 1.26
CCDC50-201ENST00000392455 SHROOM4Q9ULL8 1493 aa22.93■■□□□ 1.26
CCDC50-201ENST00000392455 YTHDC1Q96MU7 727 aaKnown RBP22.77■■□□□ 1.24
CCDC50-201ENST00000392455 APLP2Q06481 763 aa22.73■■□□□ 1.23
CCDC50-201ENST00000392455 NISCHQ9Y2I1 1504 aa22.64■■□□□ 1.22
CCDC50-201ENST00000392455 CENPBP07199 599 aaPredicted RBP22.59■■□□□ 1.21
CCDC50-201ENST00000392455 NEFLP07196 543 aa22.3■■□□□ 1.16
CCDC50-201ENST00000392455 TTBK1Q5TCY1 1321 aaPredicted RBP22.28■■□□□ 1.16
CCDC50-201ENST00000392455 ZEB1P37275 1124 aaPredicted RBP22.22■■□□□ 1.15
CCDC50-201ENST00000392455 DAXXQ9UER7 740 aaPredicted RBP22.13■■□□□ 1.13
CCDC50-201ENST00000392455 RANGAP1P46060 587 aaPredicted RBP22.02■■□□□ 1.11
CCDC50-201ENST00000392455 PCGF6Q9BYE7 350 aa21.96■■□□□ 1.11
CCDC50-201ENST00000392455 ATP1B4Q9UN42 357 aaPredicted RBP21.9■■□□□ 1.1
CCDC50-201ENST00000392455 TRIM41Q8WV44 630 aa21.59■■□□□ 1.05
CCDC50-201ENST00000392455 UBTFP17480 764 aaKnown RBP21.53■■□□□ 1.04
CCDC50-201ENST00000392455 RTL5Q5HYW3 569 aaPredicted RBP21.47■■□□□ 1.03
CCDC50-201ENST00000392455 ZNF316A6NFI3 1004 aaPredicted RBP21.41■■□□□ 1.02
CCDC50-201ENST00000392455 PPARGC1BQ86YN6 1023 aaKnown RBP21.21■□□□□ 0.99
CCDC50-201ENST00000392455 MYT1LQ9UL68 1186 aa21.18■□□□□ 0.98
CCDC50-201ENST00000392455 POLR3GLQ9BT43 218 aa21.1■□□□□ 0.97
CCDC50-201ENST00000392455 CLSPNQ9HAW4 1339 aa21.06■□□□□ 0.96
CCDC50-201ENST00000392455 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.02■□□□□ 0.96
CCDC50-201ENST00000392455 HNRNPUL2Q1KMD3 747 aaKnown RBP21.02■□□□□ 0.96
CCDC50-201ENST00000392455 ITGAEP38570 1179 aa21■□□□□ 0.95
CCDC50-201ENST00000392455 GLIPR1L2Q4G1C9 344 aa20.92■□□□□ 0.94
CCDC50-201ENST00000392455 CHIC1Q5VXU3 224 aa20.92■□□□□ 0.94
CCDC50-201ENST00000392455 ZBTB47Q9UFB7 747 aaPredicted RBP20.91■□□□□ 0.94
CCDC50-201ENST00000392455 CNGB1Q14028 1251 aaPredicted RBP20.9■□□□□ 0.94
CCDC50-201ENST00000392455 TRIM26Q12899 539 aaPredicted RBP20.83■□□□□ 0.93
CCDC50-201ENST00000392455 SLC4A1APQ9BWU0 796 aaKnown RBP20.83■□□□□ 0.92
CCDC50-201ENST00000392455 ANP32BQ92688 251 aaKnown RBP20.76■□□□□ 0.91
CCDC50-201ENST00000392455 NEFMP07197 916 aa20.72■□□□□ 0.91
CCDC50-201ENST00000392455 HRCP23327 699 aa20.61■□□□□ 0.89
CCDC50-201ENST00000392455 CDK11AQ9UQ88 783 aaPredicted RBP20.52■□□□□ 0.88
CCDC50-201ENST00000392455 LOC105371045A0A1W2PR82 267 aa20.52■□□□□ 0.87
CCDC50-201ENST00000392455 FAM50AQ14320 339 aaKnown RBP20.41■□□□□ 0.86
CCDC50-201ENST00000392455 ANP32AP39687 249 aaKnown RBP20.39■□□□□ 0.85
CCDC50-201ENST00000392455 TRIM52Q96A61 297 aa20.34■□□□□ 0.85
CCDC50-201ENST00000392455 CDK11BP21127 795 aaKnown RBP20.31■□□□□ 0.84
CCDC50-201ENST00000392455 DIEXFQ68CQ4 756 aaKnown RBP20.29■□□□□ 0.84
CCDC50-201ENST00000392455 CANXP27824 592 aaKnown RBP20.29■□□□□ 0.84
CCDC50-201ENST00000392455 NEUROD1Q13562 356 aa20.26■□□□□ 0.83
CCDC50-201ENST00000392455 UPF2Q9HAU5 1272 aaKnown RBP20.24■□□□□ 0.83
CCDC50-201ENST00000392455 HSP90AA1P07900 732 aaKnown RBP20.2■□□□□ 0.83
CCDC50-201ENST00000392455 SLC24A1O60721 1099 aa20.2■□□□□ 0.82
CCDC50-201ENST00000392455 ZNF326Q5BKZ1 582 aaKnown RBP20.18■□□□□ 0.82
CCDC50-201ENST00000392455 TNNT2P45379 298 aaPredicted RBP20.17■□□□□ 0.82
CCDC50-201ENST00000392455 ANP32CO43423 234 aa20.14■□□□□ 0.82
CCDC50-201ENST00000392455 EIF5BO60841 1220 aaKnown RBP20.14■□□□□ 0.82
CCDC50-201ENST00000392455 BCL11AQ9H165 835 aa20.14■□□□□ 0.81
CCDC50-201ENST00000392455 BCANQ96GW7 911 aa20.12■□□□□ 0.81
CCDC50-201ENST00000392455 FBLN2P98095 1184 aa20.03■□□□□ 0.8
CCDC50-201ENST00000392455 ANP32EQ9BTT0 268 aa20.01■□□□□ 0.79
CCDC50-201ENST00000392455 PABPN1Q86U42 306 aaKnown RBP eCLIP20■□□□□ 0.79
CCDC50-201ENST00000392455 TRIM44Q96DX7 344 aaPredicted RBP19.91■□□□□ 0.78
CCDC50-201ENST00000392455 ABCC9O60706 1549 aa19.9■□□□□ 0.78
CCDC50-201ENST00000392455 GTF3C3Q9Y5Q9 886 aa19.86■□□□□ 0.77
CCDC50-201ENST00000392455 ARID3CA6NKF2 412 aa19.83■□□□□ 0.76
CCDC50-201ENST00000392455 P3H3Q8IVL6 736 aa19.76■□□□□ 0.75
CCDC50-201ENST00000392455 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.75■□□□□ 0.75
CCDC50-201ENST00000392455 ZNF777Q9ULD5 760 aaPredicted RBP19.72■□□□□ 0.75
CCDC50-201ENST00000392455 NCLP19338 710 aaKnown RBP19.71■□□□□ 0.75
CCDC50-201ENST00000392455 NPM2Q86SE8 214 aaKnown RBP19.7■□□□□ 0.74
CCDC50-201ENST00000392455 GOLGA6L22H0YM25 854 aa19.68■□□□□ 0.74
CCDC50-201ENST00000392455 ZRSR1Q15695 479 aaKnown RBP19.67■□□□□ 0.74
CCDC50-201ENST00000392455 PLPPR3Q6T4P5 718 aa19.65■□□□□ 0.74
CCDC50-201ENST00000392455 ESF1Q9H501 851 aaKnown RBP19.64■□□□□ 0.74
CCDC50-201ENST00000392455 MYH16Q9H6N6 1097 aa19.64■□□□□ 0.73
CCDC50-201ENST00000392455 BECN1Q14457 450 aa19.63■□□□□ 0.73
CCDC50-201ENST00000392455 GOLGA6L6A8MZA4 724 aa19.59■□□□□ 0.73
CCDC50-201ENST00000392455 STAG3Q9UJ98 1225 aa19.59■□□□□ 0.73
CCDC50-201ENST00000392455 L1TD1Q5T7N2 865 aaKnown RBP19.58■□□□□ 0.72
CCDC50-201ENST00000392455 DDRGK1Q96HY6 314 aa19.58■□□□□ 0.72
CCDC50-201ENST00000392455 NRDCO43847 1150 aa19.57■□□□□ 0.72
CCDC50-201ENST00000392455 CHGAP10645 457 aaKnown RBP19.56■□□□□ 0.72
CCDC50-201ENST00000392455 ERICH6BQ5W0A0 696 aa19.49■□□□□ 0.71
CCDC50-201ENST00000392455 CASC1Q6TDU7 716 aa19.43■□□□□ 0.7
CCDC50-201ENST00000392455 TONSLQ96HA7 1378 aa19.43■□□□□ 0.7
CCDC50-201ENST00000392455 SALL2Q9Y467 1007 aaPredicted RBP19.41■□□□□ 0.7
CCDC50-201ENST00000392455 FKBP8Q14318 412 aa19.41■□□□□ 0.7
CCDC50-201ENST00000392455 PTMAP06454 111 aaKnown RBP19.4■□□□□ 0.7
CCDC50-201ENST00000392455 ACIN1Q9UKV3 1341 aaKnown RBP19.4■□□□□ 0.7
CCDC50-201ENST00000392455 DNTTIP2Q5QJE6 756 aaKnown RBP19.4■□□□□ 0.7
CCDC50-201ENST00000392455 FAM9BQ8IZU0 186 aa19.39■□□□□ 0.69
CCDC50-201ENST00000392455 CHAF1AQ13111 956 aaPredicted RBP19.39■□□□□ 0.69
CCDC50-201ENST00000392455 HNRNPUQ00839 825 aaKnown RBP eCLIP19.36■□□□□ 0.69
CCDC50-201ENST00000392455 CSRNP3Q8WYN3 585 aa19.36■□□□□ 0.69
CCDC50-201ENST00000392455 CCDC136Q96JN2 1154 aa19.36■□□□□ 0.69
CCDC50-201ENST00000392455 USP35Q9P2H5 1018 aa19.34■□□□□ 0.69
CCDC50-201ENST00000392455 SCAF1Q9H7N4 1312 aaKnown RBP19.34■□□□□ 0.69
CCDC50-201ENST00000392455 SCRIBQ14160 1630 aa19.34■□□□□ 0.69
CCDC50-201ENST00000392455 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.34■□□□□ 0.691e-6■■□□□ 13.1
CCDC50-201ENST00000392455 NPM1P06748 294 aaKnown RBP eCLIP19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms