RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 ADGRG4Q8IZF6 3080 aa11.42□□□□□ -0.58
SHANK1-203ENST00000391813 ZZEF1O43149 2961 aa11.41□□□□□ -0.58
SHANK1-203ENST00000391813 KRTAP7-1Q8IUC3 87 aa11.39□□□□□ -0.59
SHANK1-203ENST00000391813 PANO1I0J062 215 aa11.38□□□□□ -0.59
SHANK1-203ENST00000391813 BOD1L1Q8NFC6 3051 aa11.38□□□□□ -0.59
SHANK1-203ENST00000391813 KRTAP16-1A8MUX0 517 aa11.36□□□□□ -0.59
SHANK1-203ENST00000391813 Q6ZRN7 208 aaPredicted RBP11.36□□□□□ -0.59
SHANK1-203ENST00000391813 R4GN34 69 aa11.35□□□□□ -0.59
SHANK1-203ENST00000391813 LRBAP50851 2863 aa11.34□□□□□ -0.59
SHANK1-203ENST00000391813 DMXL1Q9Y485 3027 aa11.33□□□□□ -0.6
SHANK1-203ENST00000391813 SEC61BP60468 96 aaKnown RBP11.32□□□□□ -0.6
SHANK1-203ENST00000391813 KRTAP11-1Q8IUC1 163 aa11.29□□□□□ -0.6
SHANK1-203ENST00000391813 CFAP47Q6ZTR5 3102 aa11.29□□□□□ -0.6
SHANK1-203ENST00000391813 KRTAP13-1Q8IUC0 172 aa11.24□□□□□ -0.61
SHANK1-203ENST00000391813 ZANQ9Y493 2812 aa11.24□□□□□ -0.61
SHANK1-203ENST00000391813 M0R2T5 61 aa11.14□□□□□ -0.63
SHANK1-203ENST00000391813 RPS29P62273 56 aaKnown RBP11.14□□□□□ -0.63
SHANK1-203ENST00000391813 M0QZ58 72 aa11.13□□□□□ -0.63
SHANK1-203ENST00000391813 CELSR2Q9HCU4 2923 aa11.12□□□□□ -0.63
SHANK1-203ENST00000391813 NDUFAF8A1L188 74 aa11.09□□□□□ -0.63
SHANK1-203ENST00000391813 CRYBG3Q68DQ2 2970 aa11.09□□□□□ -0.63
SHANK1-203ENST00000391813 DCHS2Q6V1P9 2916 aa11.05□□□□□ -0.64
SHANK1-203ENST00000391813 ASH1LQ9NR48 2969 aaKnown RBP11.05□□□□□ -0.64
SHANK1-203ENST00000391813 HRNRQ86YZ3 2850 aaPredicted RBP11.02□□□□□ -0.65
SHANK1-203ENST00000391813 A8MUU9 505 aa11.01□□□□□ -0.65
SHANK1-203ENST00000391813 KRTAP13-2Q52LG2 175 aa10.96□□□□□ -0.66
SHANK1-203ENST00000391813 NF1P21359 2839 aa10.94□□□□□ -0.66
SHANK1-203ENST00000391813 USP34Q70CQ2 3546 aa10.93□□□□□ -0.66
SHANK1-203ENST00000391813 MYO15AQ9UKN7 3530 aa10.91□□□□□ -0.66
SHANK1-203ENST00000391813 MXRA5Q9NR99 2828 aa10.89□□□□□ -0.67
SHANK1-203ENST00000391813 LOC400499M0QZD8 3231 aa10.88□□□□□ -0.67
SHANK1-203ENST00000391813 PLAC4Q8WY50 150 aa10.78□□□□□ -0.68
SHANK1-203ENST00000391813 C20orf166-AS1Q96NR2 134 aa10.76□□□□□ -0.69
SHANK1-203ENST00000391813 FBN2P35556 2912 aa10.75□□□□□ -0.69
SHANK1-203ENST00000391813 H0YAA0 97 aa10.71□□□□□ -0.69
SHANK1-203ENST00000391813 MUC3AQ02505 3323 aa10.7□□□□□ -0.7
SHANK1-203ENST00000391813 TENM3Q9P273 2699 aa10.67□□□□□ -0.7
SHANK1-203ENST00000391813 PDZD2O15018 2839 aa10.66□□□□□ -0.7
SHANK1-203ENST00000391813 TENM1Q9UKZ4 2725 aa10.65□□□□□ -0.7
SHANK1-203ENST00000391813 TENM2Q9NT68 2774 aa10.59□□□□□ -0.71
SHANK1-203ENST00000391813 DMDP11532 3685 aa10.55□□□□□ -0.72
SHANK1-203ENST00000391813 PP632Q6XCG6 107 aa10.54□□□□□ -0.72
SHANK1-203ENST00000391813 WDFY3Q8IZQ1 3526 aa10.53□□□□□ -0.72
SHANK1-203ENST00000391813 C10orf95Q9H7T3 257 aa10.53□□□□□ -0.72
SHANK1-203ENST00000391813 P0C880 135 aa10.5□□□□□ -0.73
SHANK1-203ENST00000391813 DCHS1Q96JQ0 3298 aa10.48□□□□□ -0.73
SHANK1-203ENST00000391813 KRTAP1-4P0C5Y4 121 aa10.46□□□□□ -0.73
SHANK1-203ENST00000391813 KRTAP13-3Q3SY46 172 aa10.46□□□□□ -0.73
SHANK1-203ENST00000391813 TNP1P09430 55 aa10.46□□□□□ -0.74
SHANK1-203ENST00000391813 OTOGQ6ZRI0 2925 aa10.46□□□□□ -0.74
SHANK1-203ENST00000391813 CELSR1Q9NYQ6 3014 aa10.42□□□□□ -0.74
SHANK1-203ENST00000391813 LAMA5O15230 3695 aa10.37□□□□□ -0.75
SHANK1-203ENST00000391813 PKD1L1Q8TDX9 2849 aa10.36□□□□□ -0.75
SHANK1-203ENST00000391813 A0A1B0GVY2 172 aa10.36□□□□□ -0.75
SHANK1-203ENST00000391813 ASPMQ8IZT6 3477 aa10.34□□□□□ -0.75
SHANK1-203ENST00000391813 RELNP78509 3460 aa10.33□□□□□ -0.76
SHANK1-203ENST00000391813 TPRXLQ17RH7 258 aa10.28□□□□□ -0.76
SHANK1-203ENST00000391813 TGP01266 2768 aa10.27□□□□□ -0.77
SHANK1-203ENST00000391813 XP32Q5T750 250 aa10.21□□□□□ -0.77
SHANK1-203ENST00000391813 ZFHX4Q86UP3 3567 aa10.15□□□□□ -0.78
SHANK1-203ENST00000391813 VWFP04275 2813 aa10.12□□□□□ -0.79
SHANK1-203ENST00000391813 KRTAP10-8P60410 259 aa10.11□□□□□ -0.79
SHANK1-203ENST00000391813 FBN1P35555 2871 aaKnown RBP10.09□□□□□ -0.79
SHANK1-203ENST00000391813 SMG1Q96Q15 3661 aaKnown RBP9.92□□□□□ -0.82
SHANK1-203ENST00000391813 NBPF19A0A087WUL8 3843 aa9.91□□□□□ -0.82
SHANK1-203ENST00000391813 CUBNO60494 3623 aa9.9□□□□□ -0.82
SHANK1-203ENST00000391813 ZFHX3Q15911 3703 aa9.87□□□□□ -0.83
SHANK1-203ENST00000391813 KRTAP12-2P59991 146 aa9.86□□□□□ -0.83
SHANK1-203ENST00000391813 CSMD1Q96PZ7 3565 aa9.85□□□□□ -0.83
SHANK1-203ENST00000391813 BSNQ9UPA5 3926 aa9.84□□□□□ -0.83
SHANK1-203ENST00000391813 KRTAP12-1P59990 96 aa9.78□□□□□ -0.84
SHANK1-203ENST00000391813 ANK3Q12955 4377 aaKnown RBP9.77□□□□□ -0.85
SHANK1-203ENST00000391813 KRTAP3-1Q9BYR8 98 aa9.75□□□□□ -0.85
SHANK1-203ENST00000391813 SPENQ96T58 3664 aaKnown RBP9.74□□□□□ -0.85
SHANK1-203ENST00000391813 FBN3Q75N90 2809 aa9.74□□□□□ -0.85
SHANK1-203ENST00000391813 KRTAP13-4Q3LI77 160 aa9.69□□□□□ -0.86
SHANK1-203ENST00000391813 SVEP1Q4LDE5 3571 aa9.67□□□□□ -0.86
SHANK1-203ENST00000391813 KRTAP10-10P60014 251 aa9.64□□□□□ -0.87
SHANK1-203ENST00000391813 SRRM2Q9UQ35 2752 aaKnown RBP9.64□□□□□ -0.87
SHANK1-203ENST00000391813 KRTAP10-6P60371 365 aaPredicted RBP9.59□□□□□ -0.87
SHANK1-203ENST00000391813 KRTAP15-1Q3LI76 137 aa9.5□□□□□ -0.89
SHANK1-203ENST00000391813 CSMD2Q7Z408 3487 aa9.46□□□□□ -0.89
SHANK1-203ENST00000391813 PRO2289Q9P1D8 64 aa9.45□□□□□ -0.9
SHANK1-203ENST00000391813 MEGF8Q7Z7M0 2845 aa9.43□□□□□ -0.9
SHANK1-203ENST00000391813 MT1HL1P0DM35 61 aa9.39□□□□□ -0.91
SHANK1-203ENST00000391813 TRRAPQ9Y4A5 3859 aa9.32□□□□□ -0.92
SHANK1-203ENST00000391813 COL7A1Q02388 2944 aa9.29□□□□□ -0.92
SHANK1-203ENST00000391813 KRTAP3-2Q9BYR7 98 aa9.25□□□□□ -0.93
SHANK1-203ENST00000391813 KRTAP10-4P60372 401 aaPredicted RBP9.24□□□□□ -0.93
SHANK1-203ENST00000391813 INE1O15225 51 aa9.16□□□□□ -0.94
SHANK1-203ENST00000391813 KRTAP3-3Q9BYR6 98 aa9.15□□□□□ -0.94
SHANK1-203ENST00000391813 KRTAP4-5Q9BYR2 181 aa9.13□□□□□ -0.95
SHANK1-203ENST00000391813 AKAP9Q99996 3911 aa9.07□□□□□ -0.96
SHANK1-203ENST00000391813 ZNF469Q96JG9 3925 aaPredicted RBP9.04□□□□□ -0.96
SHANK1-203ENST00000391813 HUWE1Q7Z6Z7 4374 aaKnown RBP9.04□□□□□ -0.96
SHANK1-203ENST00000391813 VPS13CQ709C8 3753 aa9.04□□□□□ -0.96
SHANK1-203ENST00000391813 ALMS1Q8TCU4 4167 aa8.94□□□□□ -0.98
SHANK1-203ENST00000391813 KRTAP23-1A1A580 65 aa8.85□□□□□ -0.99
SHANK1-203ENST00000391813 DNAH9Q9NYC9 4486 aa8.81□□□□□ -1
SHANK1-203ENST00000391813 DNHD1Q96M86 4753 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms