RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 TP53AIP1Q9HCN2 124 aa11.01□□□□□ -0.65
CCDC3-201ENST00000378825 SPINK7P58062 85 aa11□□□□□ -0.65
CCDC3-201ENST00000378825 NUPR2A6NF83 97 aa11□□□□□ -0.65
CCDC3-201ENST00000378825 WWC2-AS2Q96NR7 200 aa11□□□□□ -0.65
CCDC3-201ENST00000378825 SPINK6Q6UWN8 80 aa10.98□□□□□ -0.65
CCDC3-201ENST00000378825 SPACA4Q8TDM5 124 aa10.98□□□□□ -0.65
CCDC3-201ENST00000378825 MRPL34Q9BQ48 92 aaKnown RBP10.98□□□□□ -0.65
CCDC3-201ENST00000378825 DNAH2Q9P225 4427 aa10.98□□□□□ -0.65
CCDC3-201ENST00000378825 Q5W150 140 aa10.97□□□□□ -0.65
CCDC3-201ENST00000378825 PLAC8Q9NZF1 115 aa10.97□□□□□ -0.65
CCDC3-201ENST00000378825 LINC01558Q9Y6Z2 57 aa10.97□□□□□ -0.65
CCDC3-201ENST00000378825 DNAH17Q9UFH2 4485 aa10.97□□□□□ -0.65
CCDC3-201ENST00000378825 DNHD1Q96M86 4753 aa10.97□□□□□ -0.65
CCDC3-201ENST00000378825 ATP11AUNQ6ZP68 121 aa10.96□□□□□ -0.65
CCDC3-201ENST00000378825 PRR26Q8N8Z3 221 aa10.96□□□□□ -0.65
CCDC3-201ENST00000378825 LINC00483Q53H64 154 aa10.95□□□□□ -0.66
CCDC3-201ENST00000378825 KTN1-AS1Q86SY8 53 aa10.95□□□□□ -0.66
CCDC3-201ENST00000378825 PSORS1C2Q9UIG4 136 aa10.95□□□□□ -0.66
CCDC3-201ENST00000378825 A6NN06 94 aa10.94□□□□□ -0.66
CCDC3-201ENST00000378825 CDK2AP2O75956 126 aa10.94□□□□□ -0.66
CCDC3-201ENST00000378825 CDC42SE1Q9NRR8 79 aa10.94□□□□□ -0.66
CCDC3-201ENST00000378825 A0A087WTM6 91 aa10.9□□□□□ -0.66
CCDC3-201ENST00000378825 FBN3Q75N90 2809 aa10.88□□□□□ -0.67
CCDC3-201ENST00000378825 RBM12B-AS1Q9P1G2 102 aa10.87□□□□□ -0.67
CCDC3-201ENST00000378825 IGLV5-52A0A0A0MRZ9 124 aa10.86□□□□□ -0.67
CCDC3-201ENST00000378825 RTL8CO15255 209 aa10.84□□□□□ -0.67
CCDC3-201ENST00000378825 KRTAP13-3Q3SY46 172 aa10.83□□□□□ -0.68
CCDC3-201ENST00000378825 RETNLBQ9BQ08 111 aa10.83□□□□□ -0.68
CCDC3-201ENST00000378825 CIRBP-AS1Q8TBR5 109 aa10.81□□□□□ -0.68
CCDC3-201ENST00000378825 ZNF861PO60384 105 aa10.81□□□□□ -0.68
CCDC3-201ENST00000378825 ALMS1Q8TCU4 4167 aa10.81□□□□□ -0.68
CCDC3-201ENST00000378825 ZNF706Q9Y5V0 76 aaPredicted RBP10.8□□□□□ -0.68
CCDC3-201ENST00000378825 DNAH6Q9C0G6 4158 aa10.79□□□□□ -0.68
CCDC3-201ENST00000378825 DNAH11Q96DT5 4516 aa10.72□□□□□ -0.69
CCDC3-201ENST00000378825 LY6G6CO95867 125 aa10.72□□□□□ -0.69
CCDC3-201ENST00000378825 C7orf65Q6ZTY9 151 aa10.71□□□□□ -0.69
CCDC3-201ENST00000378825 C1orf134Q5TEV5 83 aa10.69□□□□□ -0.7
CCDC3-201ENST00000378825 ACYP2P14621 99 aa10.67□□□□□ -0.7
CCDC3-201ENST00000378825 PRAC1Q96KF2 57 aa10.66□□□□□ -0.7
CCDC3-201ENST00000378825 IGLV7-43P04211 117 aa10.65□□□□□ -0.7
CCDC3-201ENST00000378825 DNAH5Q8TE73 4624 aa10.65□□□□□ -0.7
CCDC3-201ENST00000378825 ADM2Q7Z4H4 148 aa10.64□□□□□ -0.71
CCDC3-201ENST00000378825 DMAC1Q96GE9 116 aa10.63□□□□□ -0.71
CCDC3-201ENST00000378825 LINC00313P59037 77 aa10.6□□□□□ -0.71
CCDC3-201ENST00000378825 KRTAP10-2P60368 255 aa10.59□□□□□ -0.71
CCDC3-201ENST00000378825 LRP1BQ9NZR2 4599 aa10.58□□□□□ -0.72
CCDC3-201ENST00000378825 HYDINQ4G0P3 5121 aa10.57□□□□□ -0.72
CCDC3-201ENST00000378825 A0A1B0GU69 56 aa10.56□□□□□ -0.72
CCDC3-201ENST00000378825 C8orf87E5RJ46 101 aa10.54□□□□□ -0.72
CCDC3-201ENST00000378825 IGKV2-30P06310 120 aa10.53□□□□□ -0.72
CCDC3-201ENST00000378825 KRTAP13-2Q52LG2 175 aa10.53□□□□□ -0.72
CCDC3-201ENST00000378825 FAM229AH3BQW9 127 aa10.52□□□□□ -0.73
CCDC3-201ENST00000378825 IGKV2D-30A0A075B6S6 120 aa10.5□□□□□ -0.73
CCDC3-201ENST00000378825 SSBP3-AS1Q7Z2R9 100 aa10.49□□□□□ -0.73
CCDC3-201ENST00000378825 KRTAP16-1A8MUX0 517 aa10.48□□□□□ -0.73
CCDC3-201ENST00000378825 PKD1P98161 4303 aa10.47□□□□□ -0.73
CCDC3-201ENST00000378825 FAT2Q9NYQ8 4349 aa10.46□□□□□ -0.74
CCDC3-201ENST00000378825 KRTAP10-1P60331 282 aa10.43□□□□□ -0.74
CCDC3-201ENST00000378825 SPATA8Q6RVD6 105 aa10.43□□□□□ -0.74
CCDC3-201ENST00000378825 VPS13BQ7Z7G8 4022 aa10.43□□□□□ -0.74
CCDC3-201ENST00000378825 MIR22HGQ0VDD5 57 aa10.41□□□□□ -0.74
CCDC3-201ENST00000378825 SPINK1P00995 79 aa10.38□□□□□ -0.75
CCDC3-201ENST00000378825 PLA2G1BP04054 148 aaKnown RBP10.36□□□□□ -0.75
CCDC3-201ENST00000378825 UQCR11O14957 56 aa10.36□□□□□ -0.75
CCDC3-201ENST00000378825 PKHD1P08F94 4074 aa10.34□□□□□ -0.75
CCDC3-201ENST00000378825 Q8N1X5 172 aa10.33□□□□□ -0.76
CCDC3-201ENST00000378825 KRTAP1-4P0C5Y4 121 aa10.31□□□□□ -0.76
CCDC3-201ENST00000378825 Q6ZSA8 131 aa10.3□□□□□ -0.76
CCDC3-201ENST00000378825 LINC01554Q52M75 96 aa10.22□□□□□ -0.77
CCDC3-201ENST00000378825 CSAG1Q6PB30 78 aa10.22□□□□□ -0.77
CCDC3-201ENST00000378825 SACSQ9NZJ4 4579 aa10.2□□□□□ -0.78
CCDC3-201ENST00000378825 TYMSOSQ8TAI1 123 aa10.15□□□□□ -0.78
CCDC3-201ENST00000378825 C4orf48Q5BLP8 95 aa10.14□□□□□ -0.79
CCDC3-201ENST00000378825 SMR3BP02814 79 aaPredicted RBP10.11□□□□□ -0.79
CCDC3-201ENST00000378825 FAT1Q14517 4588 aa10.1□□□□□ -0.79
CCDC3-201ENST00000378825 DYNC1H1Q14204 4646 aaKnown RBP10.1□□□□□ -0.79
CCDC3-201ENST00000378825 H0YAA0 97 aa10.09□□□□□ -0.79
CCDC3-201ENST00000378825 FLG2Q5D862 2391 aaPredicted RBP10.08□□□□□ -0.8
CCDC3-201ENST00000378825 C9orf92A6NGG3 77 aa10.06□□□□□ -0.8
CCDC3-201ENST00000378825 KRTAP3-1Q9BYR8 98 aa10.02□□□□□ -0.81
CCDC3-201ENST00000378825 LINC00304Q8N9R0 145 aa9.98□□□□□ -0.81
CCDC3-201ENST00000378825 A8MUU9 505 aa9.96□□□□□ -0.82
CCDC3-201ENST00000378825 APOBP04114 4563 aaKnown RBP9.94□□□□□ -0.82
CCDC3-201ENST00000378825 A0A1B0GU33 70 aa9.91□□□□□ -0.82
CCDC3-201ENST00000378825 KMT2CQ8NEZ4 4911 aaKnown RBP9.9□□□□□ -0.82
CCDC3-201ENST00000378825 CRIPTQ9P021 101 aa9.89□□□□□ -0.83
CCDC3-201ENST00000378825 KRTAP21-3Q3LHN1 58 aa9.87□□□□□ -0.83
CCDC3-201ENST00000378825 H1FX-AS1Q4G0G2 97 aa9.84□□□□□ -0.83
CCDC3-201ENST00000378825 RYR2Q92736 4967 aa9.83□□□□□ -0.84
CCDC3-201ENST00000378825 C20orf166-AS1Q96NR2 134 aa9.83□□□□□ -0.84
CCDC3-201ENST00000378825 A0A1B0GVY2 172 aa9.82□□□□□ -0.84
CCDC3-201ENST00000378825 PKHD1L1Q86WI1 4243 aa9.82□□□□□ -0.84
CCDC3-201ENST00000378825 KRTAP25-1Q3LHN0 102 aa9.8□□□□□ -0.84
CCDC3-201ENST00000378825 H3BS24 57 aa9.79□□□□□ -0.84
CCDC3-201ENST00000378825 KRTAP10-4P60372 401 aaPredicted RBP9.78□□□□□ -0.84
CCDC3-201ENST00000378825 DMBT1Q9UGM3 2413 aaPredicted RBP9.75□□□□□ -0.85
CCDC3-201ENST00000378825 RPS29P62273 56 aaKnown RBP9.75□□□□□ -0.85
CCDC3-201ENST00000378825 COX6B2Q6YFQ2 88 aa9.73□□□□□ -0.85
CCDC3-201ENST00000378825 LRP1Q07954 4544 aaKnown RBP9.73□□□□□ -0.85
CCDC3-201ENST00000378825 HSPG2P98160 4391 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms