RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 A0A087X002 238 aa11.51□□□□□ -0.57
CCDC88B-202ENST00000356786 CRYBG3Q68DQ2 2970 aa11.51□□□□□ -0.57
CCDC88B-202ENST00000356786 NOTCH2NLQ7Z3S9 236 aa11.51□□□□□ -0.57
CCDC88B-202ENST00000356786 H1FX-AS1Q4G0G2 97 aa11.51□□□□□ -0.57
CCDC88B-202ENST00000356786 PANO1I0J062 215 aa11.49□□□□□ -0.57
CCDC88B-202ENST00000356786 WDFY3Q8IZQ1 3526 aa11.48□□□□□ -0.57
CCDC88B-202ENST00000356786 A0A0A0MQY5 61 aa11.47□□□□□ -0.57
CCDC88B-202ENST00000356786 RELNP78509 3460 aa11.45□□□□□ -0.58
CCDC88B-202ENST00000356786 CELSR2Q9HCU4 2923 aa11.44□□□□□ -0.58
CCDC88B-202ENST00000356786 DMDP11532 3685 aa11.41□□□□□ -0.58
CCDC88B-202ENST00000356786 ADM2Q7Z4H4 148 aa11.41□□□□□ -0.58
CCDC88B-202ENST00000356786 LAMA5O15230 3695 aa11.4□□□□□ -0.58
CCDC88B-202ENST00000356786 NIPBLQ6KC79 2804 aaeCLIP11.4□□□□□ -0.58
CCDC88B-202ENST00000356786 R4GN34 69 aa11.4□□□□□ -0.59
CCDC88B-202ENST00000356786 NF1P21359 2839 aa11.4□□□□□ -0.59
CCDC88B-202ENST00000356786 DCHS2Q6V1P9 2916 aa11.37□□□□□ -0.59
CCDC88B-202ENST00000356786 FBN2P35556 2912 aa11.35□□□□□ -0.59
CCDC88B-202ENST00000356786 KRTAP11-1Q8IUC1 163 aa11.35□□□□□ -0.59
CCDC88B-202ENST00000356786 DCHS1Q96JQ0 3298 aa11.35□□□□□ -0.59
CCDC88B-202ENST00000356786 ASPMQ8IZT6 3477 aa11.35□□□□□ -0.59
CCDC88B-202ENST00000356786 KRTAP7-1Q8IUC3 87 aa11.34□□□□□ -0.59
CCDC88B-202ENST00000356786 KRTAP10-1P60331 282 aa11.28□□□□□ -0.6
CCDC88B-202ENST00000356786 KRTAP25-1Q3LHN0 102 aa11.28□□□□□ -0.6
CCDC88B-202ENST00000356786 KRTAP10-2P60368 255 aa11.27□□□□□ -0.61
CCDC88B-202ENST00000356786 KMT2BQ9UMN6 2715 aaPredicted RBP11.27□□□□□ -0.61
CCDC88B-202ENST00000356786 ZFHX4Q86UP3 3567 aa11.22□□□□□ -0.61
CCDC88B-202ENST00000356786 MXRA5Q9NR99 2828 aa11.2□□□□□ -0.62
CCDC88B-202ENST00000356786 M0QZ58 72 aa11.2□□□□□ -0.62
CCDC88B-202ENST00000356786 KRTAP16-1A8MUX0 517 aa11.15□□□□□ -0.62
CCDC88B-202ENST00000356786 TENM4Q6N022 2769 aa11.11□□□□□ -0.63
CCDC88B-202ENST00000356786 M0R2T5 61 aa11.08□□□□□ -0.64
CCDC88B-202ENST00000356786 KRTAP13-1Q8IUC0 172 aa11.07□□□□□ -0.64
CCDC88B-202ENST00000356786 NDUFAF8A1L188 74 aa11.04□□□□□ -0.64
CCDC88B-202ENST00000356786 Q6ZRN7 208 aaPredicted RBP11.01□□□□□ -0.65
CCDC88B-202ENST00000356786 SEC61BP60468 96 aaKnown RBP10.98□□□□□ -0.65
CCDC88B-202ENST00000356786 KRTAP13-2Q52LG2 175 aa10.96□□□□□ -0.66
CCDC88B-202ENST00000356786 Q5VSD8 79 aa10.94□□□□□ -0.66
CCDC88B-202ENST00000356786 SMG1Q96Q15 3661 aaKnown RBP10.89□□□□□ -0.67
CCDC88B-202ENST00000356786 A8MUU9 505 aa10.88□□□□□ -0.67
CCDC88B-202ENST00000356786 RPS29P62273 56 aaKnown RBP10.85□□□□□ -0.67
CCDC88B-202ENST00000356786 PDZD2O15018 2839 aa10.81□□□□□ -0.68
CCDC88B-202ENST00000356786 CELSR1Q9NYQ6 3014 aa10.81□□□□□ -0.68
CCDC88B-202ENST00000356786 CSMD1Q96PZ7 3565 aa10.76□□□□□ -0.69
CCDC88B-202ENST00000356786 TENM3Q9P273 2699 aa10.76□□□□□ -0.69
CCDC88B-202ENST00000356786 PLAC4Q8WY50 150 aa10.75□□□□□ -0.69
CCDC88B-202ENST00000356786 TENM1Q9UKZ4 2725 aa10.72□□□□□ -0.69
CCDC88B-202ENST00000356786 NBPF19A0A087WUL8 3843 aa10.64□□□□□ -0.71
CCDC88B-202ENST00000356786 OTOGQ6ZRI0 2925 aa10.63□□□□□ -0.71
CCDC88B-202ENST00000356786 SVEP1Q4LDE5 3571 aa10.62□□□□□ -0.71
CCDC88B-202ENST00000356786 C20orf166-AS1Q96NR2 134 aa10.61□□□□□ -0.71
CCDC88B-202ENST00000356786 KRTAP21-3Q3LHN1 58 aa10.6□□□□□ -0.71
CCDC88B-202ENST00000356786 C10orf95Q9H7T3 257 aa10.6□□□□□ -0.71
CCDC88B-202ENST00000356786 H0YAA0 97 aa10.59□□□□□ -0.71
CCDC88B-202ENST00000356786 SPENQ96T58 3664 aaKnown RBP10.57□□□□□ -0.72
CCDC88B-202ENST00000356786 VWFP04275 2813 aa10.56□□□□□ -0.72
CCDC88B-202ENST00000356786 FBN1P35555 2871 aaKnown RBP10.52□□□□□ -0.73
CCDC88B-202ENST00000356786 TGP01266 2768 aa10.51□□□□□ -0.73
CCDC88B-202ENST00000356786 BSNQ9UPA5 3926 aa10.47□□□□□ -0.73
CCDC88B-202ENST00000356786 CSMD2Q7Z408 3487 aa10.43□□□□□ -0.74
CCDC88B-202ENST00000356786 ZFHX3Q15911 3703 aa10.42□□□□□ -0.74
CCDC88B-202ENST00000356786 TNP1P09430 55 aa10.4□□□□□ -0.74
CCDC88B-202ENST00000356786 KRTAP1-4P0C5Y4 121 aa10.39□□□□□ -0.75
CCDC88B-202ENST00000356786 PKD1L1Q8TDX9 2849 aa10.35□□□□□ -0.75
CCDC88B-202ENST00000356786 TENM2Q9NT68 2774 aa10.35□□□□□ -0.75
CCDC88B-202ENST00000356786 P0C880 135 aa10.35□□□□□ -0.75
CCDC88B-202ENST00000356786 CUBNO60494 3623 aa10.33□□□□□ -0.76
CCDC88B-202ENST00000356786 PP632Q6XCG6 107 aa10.26□□□□□ -0.77
CCDC88B-202ENST00000356786 ANK3Q12955 4377 aaKnown RBP10.23□□□□□ -0.77
CCDC88B-202ENST00000356786 KRTAP13-3Q3SY46 172 aa10.21□□□□□ -0.78
CCDC88B-202ENST00000356786 XP32Q5T750 250 aa10.18□□□□□ -0.78
CCDC88B-202ENST00000356786 KRTAP10-8P60410 259 aa10.18□□□□□ -0.78
CCDC88B-202ENST00000356786 TRRAPQ9Y4A5 3859 aa10.07□□□□□ -0.8
CCDC88B-202ENST00000356786 SRRM2Q9UQ35 2752 aaKnown RBP9.88□□□□□ -0.83
CCDC88B-202ENST00000356786 A0A1B0GVY2 172 aa9.86□□□□□ -0.83
CCDC88B-202ENST00000356786 KRTAP12-2P59991 146 aa9.83□□□□□ -0.84
CCDC88B-202ENST00000356786 VPS13CQ709C8 3753 aa9.83□□□□□ -0.84
CCDC88B-202ENST00000356786 TPRXLQ17RH7 258 aa9.8□□□□□ -0.84
CCDC88B-202ENST00000356786 FBN3Q75N90 2809 aa9.71□□□□□ -0.86
CCDC88B-202ENST00000356786 ZNF469Q96JG9 3925 aaPredicted RBP9.69□□□□□ -0.86
CCDC88B-202ENST00000356786 KRTAP3-1Q9BYR8 98 aa9.68□□□□□ -0.86
CCDC88B-202ENST00000356786 KRTAP12-1P59990 96 aa9.67□□□□□ -0.86
CCDC88B-202ENST00000356786 MEGF8Q7Z7M0 2845 aa9.62□□□□□ -0.87
CCDC88B-202ENST00000356786 KRTAP10-10P60014 251 aa9.55□□□□□ -0.88
CCDC88B-202ENST00000356786 KRTAP13-4Q3LI77 160 aa9.53□□□□□ -0.88
CCDC88B-202ENST00000356786 KRTAP10-6P60371 365 aaPredicted RBP9.46□□□□□ -0.89
CCDC88B-202ENST00000356786 COL7A1Q02388 2944 aa9.46□□□□□ -0.9
CCDC88B-202ENST00000356786 HUWE1Q7Z6Z7 4374 aaKnown RBP9.46□□□□□ -0.9
CCDC88B-202ENST00000356786 AKAP9Q99996 3911 aa9.45□□□□□ -0.9
CCDC88B-202ENST00000356786 PRO2289Q9P1D8 64 aa9.36□□□□□ -0.91
CCDC88B-202ENST00000356786 KRTAP15-1Q3LI76 137 aa9.24□□□□□ -0.93
CCDC88B-202ENST00000356786 DNAH9Q9NYC9 4486 aa9.14□□□□□ -0.95
CCDC88B-202ENST00000356786 KRTAP3-2Q9BYR7 98 aa9.11□□□□□ -0.95
CCDC88B-202ENST00000356786 CSMD3Q7Z407 3707 aa9.1□□□□□ -0.95
CCDC88B-202ENST00000356786 KRTAP3-3Q9BYR6 98 aa9.04□□□□□ -0.96
CCDC88B-202ENST00000356786 KRTAP10-4P60372 401 aaPredicted RBP9□□□□□ -0.97
CCDC88B-202ENST00000356786 MT1HL1P0DM35 61 aa8.97□□□□□ -0.97
CCDC88B-202ENST00000356786 PLECQ15149 4684 aaKnown RBP8.94□□□□□ -0.98
CCDC88B-202ENST00000356786 DNHD1Q96M86 4753 aa8.88□□□□□ -0.99
CCDC88B-202ENST00000356786 DNAH1Q9P2D7 4330 aa8.83□□□□□ -1
CCDC88B-202ENST00000356786 INE1O15225 51 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms