RNA–Protein interactions for RNA: ENST00000356384.4

RXRA-201, Transcript of retinoid X receptor alpha, humanhuman

TSL 5

Gene RXRA, Length 5,770 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RXRA-201ENST00000356384 DMDP11532 3685 aa9.14□□□□□ -0.95
RXRA-201ENST00000356384 NBEAL2Q6ZNJ1 2754 aa9.14□□□□□ -0.95
RXRA-201ENST00000356384 NBEAQ8NFP9 2946 aa9.14□□□□□ -0.95
RXRA-201ENST00000356384 A6NN06 94 aa9.13□□□□□ -0.95
RXRA-201ENST00000356384 FLNCQ14315 2725 aa9.13□□□□□ -0.95
RXRA-201ENST00000356384 KRTAP11-1Q8IUC1 163 aa9.11□□□□□ -0.95
RXRA-201ENST00000356384 WDFY3Q8IZQ1 3526 aa9.1□□□□□ -0.95
RXRA-201ENST00000356384 UBR5O95071 2799 aaPredicted RBP9.1□□□□□ -0.95
RXRA-201ENST00000356384 KALRNO60229 2985 aa9.09□□□□□ -0.95
RXRA-201ENST00000356384 NDUFAF8A1L188 74 aa9.09□□□□□ -0.95
RXRA-201ENST00000356384 UTP20O75691 2785 aaKnown RBP9.05□□□□□ -0.96
RXRA-201ENST00000356384 RPS29P62273 56 aaKnown RBP9.04□□□□□ -0.96
RXRA-201ENST00000356384 CFAP47Q6ZTR5 3102 aa9.02□□□□□ -0.97
RXRA-201ENST00000356384 ZZEF1O43149 2961 aa8.99□□□□□ -0.97
RXRA-201ENST00000356384 ITPR1Q14643 2758 aa8.98□□□□□ -0.97
RXRA-201ENST00000356384 NSD1Q96L73 2696 aaPredicted RBP8.98□□□□□ -0.97
RXRA-201ENST00000356384 MUC3AQ02505 3323 aa8.97□□□□□ -0.97
RXRA-201ENST00000356384 KRTAP13-2Q52LG2 175 aa8.97□□□□□ -0.97
RXRA-201ENST00000356384 C10orf95Q9H7T3 257 aa8.97□□□□□ -0.97
RXRA-201ENST00000356384 TNP1P09430 55 aa8.96□□□□□ -0.97
RXRA-201ENST00000356384 LAMA5O15230 3695 aa8.96□□□□□ -0.98
RXRA-201ENST00000356384 KRTAP7-1Q8IUC3 87 aa8.95□□□□□ -0.98
RXRA-201ENST00000356384 ASPMQ8IZT6 3477 aa8.95□□□□□ -0.98
RXRA-201ENST00000356384 Q6ZRN7 208 aaPredicted RBP8.94□□□□□ -0.98
RXRA-201ENST00000356384 HRNRQ86YZ3 2850 aaPredicted RBP8.94□□□□□ -0.98
RXRA-201ENST00000356384 TACC2O95359 2948 aa8.93□□□□□ -0.98
RXRA-201ENST00000356384 RELNP78509 3460 aa8.9□□□□□ -0.98
RXRA-201ENST00000356384 APCP25054 2843 aa8.89□□□□□ -0.99
RXRA-201ENST00000356384 ITPR2Q14571 2701 aa8.87□□□□□ -0.99
RXRA-201ENST00000356384 KMT2BQ9UMN6 2715 aaPredicted RBP8.86□□□□□ -0.99
RXRA-201ENST00000356384 ZFHX4Q86UP3 3567 aa8.85□□□□□ -0.99
RXRA-201ENST00000356384 KRTAP13-1Q8IUC0 172 aa8.84□□□□□ -0.99
RXRA-201ENST00000356384 CRYBG3Q68DQ2 2970 aa8.8□□□□□ -1
RXRA-201ENST00000356384 HIVEP1P15822 2718 aa8.79□□□□□ -1
RXRA-201ENST00000356384 DCHS1Q96JQ0 3298 aa8.75□□□□□ -1.01
RXRA-201ENST00000356384 ZANQ9Y493 2812 aa8.72□□□□□ -1.01
RXRA-201ENST00000356384 CELSR2Q9HCU4 2923 aa8.72□□□□□ -1.01
RXRA-201ENST00000356384 KRTAP10-8P60410 259 aa8.71□□□□□ -1.02
RXRA-201ENST00000356384 ASH1LQ9NR48 2969 aaKnown RBP8.69□□□□□ -1.02
RXRA-201ENST00000356384 TENM4Q6N022 2769 aa8.68□□□□□ -1.02
RXRA-201ENST00000356384 PP632Q6XCG6 107 aa8.64□□□□□ -1.03
RXRA-201ENST00000356384 A0A1B0GVY2 172 aa8.63□□□□□ -1.03
RXRA-201ENST00000356384 DCHS2Q6V1P9 2916 aa8.63□□□□□ -1.03
RXRA-201ENST00000356384 FBN2P35556 2912 aa8.61□□□□□ -1.03
RXRA-201ENST00000356384 SMG1Q96Q15 3661 aaKnown RBP8.6□□□□□ -1.03
RXRA-201ENST00000356384 XP32Q5T750 250 aa8.53□□□□□ -1.04
RXRA-201ENST00000356384 P0C880 135 aa8.49□□□□□ -1.05
RXRA-201ENST00000356384 NBPF19A0A087WUL8 3843 aa8.49□□□□□ -1.05
RXRA-201ENST00000356384 H0YAA0 97 aa8.49□□□□□ -1.05
RXRA-201ENST00000356384 BSNQ9UPA5 3926 aa8.48□□□□□ -1.05
RXRA-201ENST00000356384 KRTAP21-3Q3LHN1 58 aa8.48□□□□□ -1.05
RXRA-201ENST00000356384 CSMD1Q96PZ7 3565 aa8.46□□□□□ -1.06
RXRA-201ENST00000356384 SPENQ96T58 3664 aaKnown RBP8.44□□□□□ -1.06
RXRA-201ENST00000356384 KRTAP1-4P0C5Y4 121 aa8.42□□□□□ -1.06
RXRA-201ENST00000356384 KRTAP10-10P60014 251 aa8.41□□□□□ -1.06
RXRA-201ENST00000356384 NF1P21359 2839 aa8.4□□□□□ -1.06
RXRA-201ENST00000356384 PDZD2O15018 2839 aa8.4□□□□□ -1.06
RXRA-201ENST00000356384 MXRA5Q9NR99 2828 aa8.38□□□□□ -1.07
RXRA-201ENST00000356384 NIPBLQ6KC79 2804 aaeCLIP8.37□□□□□ -1.07
RXRA-201ENST00000356384 SVEP1Q4LDE5 3571 aa8.34□□□□□ -1.08
RXRA-201ENST00000356384 PRO2289Q9P1D8 64 aa8.32□□□□□ -1.08
RXRA-201ENST00000356384 TPRXLQ17RH7 258 aa8.28□□□□□ -1.08
RXRA-201ENST00000356384 ANK3Q12955 4377 aaKnown RBP8.28□□□□□ -1.08
RXRA-201ENST00000356384 TENM3Q9P273 2699 aa8.26□□□□□ -1.09
RXRA-201ENST00000356384 CELSR1Q9NYQ6 3014 aa8.23□□□□□ -1.09
RXRA-201ENST00000356384 TENM1Q9UKZ4 2725 aa8.21□□□□□ -1.09
RXRA-201ENST00000356384 CSMD2Q7Z408 3487 aa8.19□□□□□ -1.1
RXRA-201ENST00000356384 OTOGQ6ZRI0 2925 aa8.18□□□□□ -1.1
RXRA-201ENST00000356384 TENM2Q9NT68 2774 aa8.15□□□□□ -1.1
RXRA-201ENST00000356384 KRTAP13-3Q3SY46 172 aa8.15□□□□□ -1.1
RXRA-201ENST00000356384 ZFHX3Q15911 3703 aa8.05□□□□□ -1.12
RXRA-201ENST00000356384 PKD1L1Q8TDX9 2849 aa8.03□□□□□ -1.12
RXRA-201ENST00000356384 KRTAP12-2P59991 146 aa8.01□□□□□ -1.13
RXRA-201ENST00000356384 FBN1P35555 2871 aaKnown RBP7.97□□□□□ -1.13
RXRA-201ENST00000356384 VPS13CQ709C8 3753 aa7.94□□□□□ -1.14
RXRA-201ENST00000356384 VWFP04275 2813 aa7.92□□□□□ -1.14
RXRA-201ENST00000356384 KRTAP13-4Q3LI77 160 aa7.89□□□□□ -1.15
RXRA-201ENST00000356384 TRRAPQ9Y4A5 3859 aa7.87□□□□□ -1.15
RXRA-201ENST00000356384 CUBNO60494 3623 aa7.85□□□□□ -1.15
RXRA-201ENST00000356384 TGP01266 2768 aa7.85□□□□□ -1.15
RXRA-201ENST00000356384 KRTAP12-1P59990 96 aa7.8□□□□□ -1.16
RXRA-201ENST00000356384 AKAP9Q99996 3911 aa7.77□□□□□ -1.16
RXRA-201ENST00000356384 ZNF469Q96JG9 3925 aaPredicted RBP7.76□□□□□ -1.17
RXRA-201ENST00000356384 KRTAP15-1Q3LI76 137 aa7.73□□□□□ -1.17
RXRA-201ENST00000356384 HUWE1Q7Z6Z7 4374 aaKnown RBP7.67□□□□□ -1.18
RXRA-201ENST00000356384 SRRM2Q9UQ35 2752 aaKnown RBP7.65□□□□□ -1.18
RXRA-201ENST00000356384 KRTAP3-1Q9BYR8 98 aa7.61□□□□□ -1.19
RXRA-201ENST00000356384 KRTAP10-6P60371 365 aaPredicted RBP7.43□□□□□ -1.22
RXRA-201ENST00000356384 CRCT1Q9UGL9 99 aa7.41□□□□□ -1.22
RXRA-201ENST00000356384 DNAH9Q9NYC9 4486 aa7.37□□□□□ -1.23
RXRA-201ENST00000356384 INE1O15225 51 aa7.32□□□□□ -1.24
RXRA-201ENST00000356384 ALMS1Q8TCU4 4167 aa7.31□□□□□ -1.24
RXRA-201ENST00000356384 FBN3Q75N90 2809 aa7.29□□□□□ -1.24
RXRA-201ENST00000356384 KRTAP10-12P60413 245 aa7.25□□□□□ -1.25
RXRA-201ENST00000356384 MEGF8Q7Z7M0 2845 aa7.23□□□□□ -1.25
RXRA-201ENST00000356384 COL7A1Q02388 2944 aa7.17□□□□□ -1.26
RXRA-201ENST00000356384 CSMD3Q7Z407 3707 aa7.13□□□□□ -1.27
RXRA-201ENST00000356384 KRTAP4-5Q9BYR2 181 aa7.13□□□□□ -1.27
RXRA-201ENST00000356384 MT1HL1P0DM35 61 aa7.12□□□□□ -1.27
RXRA-201ENST00000356384 PLECQ15149 4684 aaKnown RBP7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms