RNA–Protein interactions for RNA: ENST00000351677.6

PTPN11-201, Transcript of protein tyrosine phosphatase, non-receptor type 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPN11, Length 6,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN11-201ENST00000351677 SPATA8Q6RVD6 105 aa9.18□□□□□ -0.94
PTPN11-201ENST00000351677 TNRC18O15417 2968 aaPredicted RBP9.16□□□□□ -0.94
PTPN11-201ENST00000351677 DMXL1Q9Y485 3027 aa9.16□□□□□ -0.94
PTPN11-201ENST00000351677 KRTAP13-1Q8IUC0 172 aa9.14□□□□□ -0.95
PTPN11-201ENST00000351677 ASB16-AS1Q495Z4 193 aa9.13□□□□□ -0.95
PTPN11-201ENST00000351677 CELSR2Q9HCU4 2923 aa9.13□□□□□ -0.95
PTPN11-201ENST00000351677 M0QZ58 72 aa9.13□□□□□ -0.95
PTPN11-201ENST00000351677 ROMO1P60602 79 aa9.13□□□□□ -0.95
PTPN11-201ENST00000351677 LOC400499M0QZD8 3231 aa9.12□□□□□ -0.95
PTPN11-201ENST00000351677 KRTAP13-2Q52LG2 175 aa9.11□□□□□ -0.95
PTPN11-201ENST00000351677 MYO15AQ9UKN7 3530 aa9.11□□□□□ -0.95
PTPN11-201ENST00000351677 CRYBG3Q68DQ2 2970 aa9.11□□□□□ -0.95
PTPN11-201ENST00000351677 ADM2Q7Z4H4 148 aa9.11□□□□□ -0.95
PTPN11-201ENST00000351677 ZANQ9Y493 2812 aa9.09□□□□□ -0.95
PTPN11-201ENST00000351677 KMT2BQ9UMN6 2715 aaPredicted RBP9.08□□□□□ -0.96
PTPN11-201ENST00000351677 HRNRQ86YZ3 2850 aaPredicted RBP9.02□□□□□ -0.96
PTPN11-201ENST00000351677 NIPBLQ6KC79 2804 aaeCLIP9.01□□□□□ -0.97
PTPN11-201ENST00000351677 RPS29P62273 56 aaKnown RBP9.01□□□□□ -0.97
PTPN11-201ENST00000351677 DCHS2Q6V1P9 2916 aa9□□□□□ -0.97
PTPN11-201ENST00000351677 H3BS24 57 aa8.97□□□□□ -0.97
PTPN11-201ENST00000351677 A8MU10 97 aa8.96□□□□□ -0.97
PTPN11-201ENST00000351677 FBN2P35556 2912 aa8.91□□□□□ -0.98
PTPN11-201ENST00000351677 A6NN06 94 aa8.91□□□□□ -0.98
PTPN11-201ENST00000351677 TENM4Q6N022 2769 aa8.89□□□□□ -0.99
PTPN11-201ENST00000351677 WDFY3Q8IZQ1 3526 aa8.82□□□□□ -1
PTPN11-201ENST00000351677 NF1P21359 2839 aa8.81□□□□□ -1
PTPN11-201ENST00000351677 A8MUU9 505 aa8.81□□□□□ -1
PTPN11-201ENST00000351677 PLAC4Q8WY50 150 aa8.81□□□□□ -1
PTPN11-201ENST00000351677 A0A0A0MQY5 61 aa8.77□□□□□ -1.01
PTPN11-201ENST00000351677 KRTAP25-1Q3LHN0 102 aa8.77□□□□□ -1.01
PTPN11-201ENST00000351677 RELNP78509 3460 aa8.76□□□□□ -1.01
PTPN11-201ENST00000351677 C20orf166-AS1Q96NR2 134 aa8.7□□□□□ -1.02
PTPN11-201ENST00000351677 KRTAP1-4P0C5Y4 121 aa8.69□□□□□ -1.02
PTPN11-201ENST00000351677 ASPMQ8IZT6 3477 aa8.65□□□□□ -1.03
PTPN11-201ENST00000351677 ZFHX4Q86UP3 3567 aa8.64□□□□□ -1.03
PTPN11-201ENST00000351677 CELSR1Q9NYQ6 3014 aa8.63□□□□□ -1.03
PTPN11-201ENST00000351677 DCHS1Q96JQ0 3298 aa8.62□□□□□ -1.03
PTPN11-201ENST00000351677 KRTAP21-3Q3LHN1 58 aa8.61□□□□□ -1.03
PTPN11-201ENST00000351677 MXRA5Q9NR99 2828 aa8.6□□□□□ -1.03
PTPN11-201ENST00000351677 LAMA5O15230 3695 aa8.57□□□□□ -1.04
PTPN11-201ENST00000351677 XP32Q5T750 250 aa8.53□□□□□ -1.04
PTPN11-201ENST00000351677 TENM1Q9UKZ4 2725 aa8.5□□□□□ -1.05
PTPN11-201ENST00000351677 KRTAP16-1A8MUX0 517 aa8.48□□□□□ -1.05
PTPN11-201ENST00000351677 TENM3Q9P273 2699 aa8.47□□□□□ -1.05
PTPN11-201ENST00000351677 CSMD1Q96PZ7 3565 aa8.46□□□□□ -1.05
PTPN11-201ENST00000351677 NDUFAF8A1L188 74 aa8.43□□□□□ -1.06
PTPN11-201ENST00000351677 TENM2Q9NT68 2774 aa8.42□□□□□ -1.06
PTPN11-201ENST00000351677 DMDP11532 3685 aa8.42□□□□□ -1.06
PTPN11-201ENST00000351677 H0YAA0 97 aa8.41□□□□□ -1.06
PTPN11-201ENST00000351677 TNP1P09430 55 aa8.4□□□□□ -1.07
PTPN11-201ENST00000351677 C10orf95Q9H7T3 257 aa8.37□□□□□ -1.07
PTPN11-201ENST00000351677 SMG1Q96Q15 3661 aaKnown RBP8.35□□□□□ -1.07
PTPN11-201ENST00000351677 A0A1B0GVY2 172 aa8.34□□□□□ -1.07
PTPN11-201ENST00000351677 TGP01266 2768 aa8.32□□□□□ -1.08
PTPN11-201ENST00000351677 NBPF19A0A087WUL8 3843 aa8.31□□□□□ -1.08
PTPN11-201ENST00000351677 PKD1L1Q8TDX9 2849 aa8.29□□□□□ -1.08
PTPN11-201ENST00000351677 TPRXLQ17RH7 258 aa8.27□□□□□ -1.08
PTPN11-201ENST00000351677 MUC3AQ02505 3323 aa8.27□□□□□ -1.08
PTPN11-201ENST00000351677 PDZD2O15018 2839 aa8.26□□□□□ -1.09
PTPN11-201ENST00000351677 KRTAP13-3Q3SY46 172 aa8.25□□□□□ -1.09
PTPN11-201ENST00000351677 P0C880 135 aa8.22□□□□□ -1.09
PTPN11-201ENST00000351677 KRTAP10-8P60410 259 aa8.21□□□□□ -1.1
PTPN11-201ENST00000351677 VWFP04275 2813 aa8.19□□□□□ -1.1
PTPN11-201ENST00000351677 SVEP1Q4LDE5 3571 aa8.18□□□□□ -1.1
PTPN11-201ENST00000351677 FBN1P35555 2871 aaKnown RBP8.14□□□□□ -1.11
PTPN11-201ENST00000351677 PP632Q6XCG6 107 aa8.13□□□□□ -1.11
PTPN11-201ENST00000351677 OTOGQ6ZRI0 2925 aa8.05□□□□□ -1.12
PTPN11-201ENST00000351677 KRTAP10-10P60014 251 aa8.05□□□□□ -1.12
PTPN11-201ENST00000351677 ZFHX3Q15911 3703 aa8.05□□□□□ -1.12
PTPN11-201ENST00000351677 CUBNO60494 3623 aa8.04□□□□□ -1.12
PTPN11-201ENST00000351677 CSMD2Q7Z408 3487 aa8□□□□□ -1.13
PTPN11-201ENST00000351677 ANK3Q12955 4377 aaKnown RBP7.98□□□□□ -1.13
PTPN11-201ENST00000351677 SPENQ96T58 3664 aaKnown RBP7.97□□□□□ -1.13
PTPN11-201ENST00000351677 KRTAP12-2P59991 146 aa7.92□□□□□ -1.14
PTPN11-201ENST00000351677 KRTAP3-1Q9BYR8 98 aa7.87□□□□□ -1.15
PTPN11-201ENST00000351677 FBN3Q75N90 2809 aa7.84□□□□□ -1.15
PTPN11-201ENST00000351677 TRRAPQ9Y4A5 3859 aa7.82□□□□□ -1.16
PTPN11-201ENST00000351677 BSNQ9UPA5 3926 aa7.79□□□□□ -1.16
PTPN11-201ENST00000351677 PRO2289Q9P1D8 64 aa7.79□□□□□ -1.16
PTPN11-201ENST00000351677 KRTAP12-1P59990 96 aa7.76□□□□□ -1.17
PTPN11-201ENST00000351677 SRRM2Q9UQ35 2752 aaKnown RBP7.74□□□□□ -1.17
PTPN11-201ENST00000351677 MEGF8Q7Z7M0 2845 aa7.7□□□□□ -1.18
PTPN11-201ENST00000351677 KRTAP13-4Q3LI77 160 aa7.66□□□□□ -1.18
PTPN11-201ENST00000351677 KRTAP10-6P60371 365 aaPredicted RBP7.61□□□□□ -1.19
PTPN11-201ENST00000351677 COL7A1Q02388 2944 aa7.6□□□□□ -1.19
PTPN11-201ENST00000351677 VPS13CQ709C8 3753 aa7.57□□□□□ -1.2
PTPN11-201ENST00000351677 HUWE1Q7Z6Z7 4374 aaKnown RBP7.52□□□□□ -1.2
PTPN11-201ENST00000351677 MT1HL1P0DM35 61 aa7.47□□□□□ -1.21
PTPN11-201ENST00000351677 KRTAP3-3Q9BYR6 98 aa7.38□□□□□ -1.23
PTPN11-201ENST00000351677 KRTAP3-2Q9BYR7 98 aa7.36□□□□□ -1.23
PTPN11-201ENST00000351677 KRTAP10-4P60372 401 aaPredicted RBP7.35□□□□□ -1.23
PTPN11-201ENST00000351677 CSMD3Q7Z407 3707 aa7.28□□□□□ -1.24
PTPN11-201ENST00000351677 KRTAP15-1Q3LI76 137 aa7.28□□□□□ -1.24
PTPN11-201ENST00000351677 KRTAP4-5Q9BYR2 181 aa7.28□□□□□ -1.24
PTPN11-201ENST00000351677 ZNF469Q96JG9 3925 aaPredicted RBP7.22□□□□□ -1.25
PTPN11-201ENST00000351677 AKAP9Q99996 3911 aa7.11□□□□□ -1.27
PTPN11-201ENST00000351677 DNAH9Q9NYC9 4486 aa7.11□□□□□ -1.27
PTPN11-201ENST00000351677 ALMS1Q8TCU4 4167 aa7.1□□□□□ -1.27
PTPN11-201ENST00000351677 KRTAP10-12P60413 245 aa7.02□□□□□ -1.29
PTPN11-201ENST00000351677 LORP23490 312 aaPredicted RBP7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms