RNA–Protein interactions for RNA: ENST00000346991.9

KNL1-201, Transcript of kinetochore scaffold 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene KNL1, Length 9,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KNL1-201ENST00000346991 PDZD2O15018 2839 aa3.74□□□□□ -1.81
KNL1-201ENST00000346991 WDFY4Q6ZS81 3184 aa3.74□□□□□ -1.81
KNL1-201ENST00000346991 KRTAP7-1Q8IUC3 87 aa3.73□□□□□ -1.81
KNL1-201ENST00000346991 TNRC18O15417 2968 aaPredicted RBP3.72□□□□□ -1.81
KNL1-201ENST00000346991 UTRNP46939 3433 aa3.71□□□□□ -1.81
KNL1-201ENST00000346991 KRTAP12-2P59991 146 aa3.71□□□□□ -1.82
KNL1-201ENST00000346991 TENM4Q6N022 2769 aa3.71□□□□□ -1.82
KNL1-201ENST00000346991 NIPBLQ6KC79 2804 aaeCLIP3.71□□□□□ -1.822e-6■■■□□ 17.6
KNL1-201ENST00000346991 KRTAP13-3Q3SY46 172 aa3.7□□□□□ -1.82
KNL1-201ENST00000346991 ASH1LQ9NR48 2969 aaKnown RBP3.7□□□□□ -1.82
KNL1-201ENST00000346991 CHD7Q9P2D1 2997 aa3.69□□□□□ -1.82
KNL1-201ENST00000346991 KRTAP13-4Q3LI77 160 aa3.69□□□□□ -1.82
KNL1-201ENST00000346991 KRTAP1-4P0C5Y4 121 aa3.68□□□□□ -1.82
KNL1-201ENST00000346991 CELSR2Q9HCU4 2923 aa3.67□□□□□ -1.82
KNL1-201ENST00000346991 KRTAP15-1Q3LI76 137 aa3.67□□□□□ -1.82
KNL1-201ENST00000346991 COL12A1Q99715 3063 aa3.63□□□□□ -1.83
KNL1-201ENST00000346991 LAMA1P25391 3075 aa3.61□□□□□ -1.83
KNL1-201ENST00000346991 INE1O15225 51 aa3.61□□□□□ -1.83
KNL1-201ENST00000346991 PRUNE2Q8WUY3 3088 aa3.6□□□□□ -1.83
KNL1-201ENST00000346991 REV3LO60673 3130 aa3.6□□□□□ -1.83
KNL1-201ENST00000346991 DMXL2Q8TDJ6 3036 aa3.59□□□□□ -1.83
KNL1-201ENST00000346991 VWFP04275 2813 aa3.57□□□□□ -1.84
KNL1-201ENST00000346991 DCHS2Q6V1P9 2916 aa3.56□□□□□ -1.84
KNL1-201ENST00000346991 VPS13AQ96RL7 3174 aa3.56□□□□□ -1.84
KNL1-201ENST00000346991 ZANQ9Y493 2812 aa3.55□□□□□ -1.84
KNL1-201ENST00000346991 TENM2Q9NT68 2774 aa3.55□□□□□ -1.84
KNL1-201ENST00000346991 PKD1L1Q8TDX9 2849 aa3.55□□□□□ -1.84
KNL1-201ENST00000346991 NBEAQ8NFP9 2946 aa3.51□□□□□ -1.85
KNL1-201ENST00000346991 ZZEF1O43149 2961 aa3.51□□□□□ -1.85
KNL1-201ENST00000346991 CELSR1Q9NYQ6 3014 aa3.49□□□□□ -1.85
KNL1-201ENST00000346991 SRRM2Q9UQ35 2752 aaKnown RBP3.49□□□□□ -1.85
KNL1-201ENST00000346991 TACC2O95359 2948 aa3.48□□□□□ -1.85
KNL1-201ENST00000346991 FREM2Q5SZK8 3169 aa3.48□□□□□ -1.85
KNL1-201ENST00000346991 KRTAP12-1P59990 96 aa3.48□□□□□ -1.85
KNL1-201ENST00000346991 XIRP2A4UGR9 3374 aa3.45□□□□□ -1.86
KNL1-201ENST00000346991 ATMQ13315 3056 aa3.44□□□□□ -1.86
KNL1-201ENST00000346991 KRTAP10-12P60413 245 aa3.43□□□□□ -1.86
KNL1-201ENST00000346991 ADGRG4Q8IZF6 3080 aa3.42□□□□□ -1.86
KNL1-201ENST00000346991 CRCT1Q9UGL9 99 aa3.42□□□□□ -1.86
KNL1-201ENST00000346991 COL7A1Q02388 2944 aa3.42□□□□□ -1.86
KNL1-201ENST00000346991 BOD1L1Q8NFC6 3051 aa3.4□□□□□ -1.86
KNL1-201ENST00000346991 USP34Q70CQ2 3546 aa3.4□□□□□ -1.87
KNL1-201ENST00000346991 LAMA3Q16787 3333 aa3.38□□□□□ -1.87
KNL1-201ENST00000346991 KRTAP10-6P60371 365 aaPredicted RBP3.38□□□□□ -1.87
KNL1-201ENST00000346991 MKI67P46013 3256 aaKnown RBP3.38□□□□□ -1.87
KNL1-201ENST00000346991 FBN2P35556 2912 aa3.36□□□□□ -1.87
KNL1-201ENST00000346991 MXRA5Q9NR99 2828 aa3.36□□□□□ -1.87
KNL1-201ENST00000346991 RANBP2P49792 3224 aaKnown RBP3.36□□□□□ -1.87
KNL1-201ENST00000346991 CELSR3Q9NYQ7 3312 aa3.35□□□□□ -1.87
KNL1-201ENST00000346991 VCANP13611 3396 aa3.35□□□□□ -1.87
KNL1-201ENST00000346991 UNC80Q8N2C7 3258 aa3.35□□□□□ -1.87
KNL1-201ENST00000346991 DMXL1Q9Y485 3027 aa3.35□□□□□ -1.87
KNL1-201ENST00000346991 HTTP42858 3142 aa3.33□□□□□ -1.88
KNL1-201ENST00000346991 COL6A3P12111 3177 aa3.33□□□□□ -1.88
KNL1-201ENST00000346991 MEGF8Q7Z7M0 2845 aa3.32□□□□□ -1.88
KNL1-201ENST00000346991 FBN3Q75N90 2809 aa3.3□□□□□ -1.88
KNL1-201ENST00000346991 KRTAP23-1A1A580 65 aa3.29□□□□□ -1.88
KNL1-201ENST00000346991 KRTAP12-3P60328 96 aa3.27□□□□□ -1.89
KNL1-201ENST00000346991 DNAH14Q0VDD8 3507 aa3.27□□□□□ -1.89
KNL1-201ENST00000346991 CFAP47Q6ZTR5 3102 aa3.26□□□□□ -1.89
KNL1-201ENST00000346991 NBPF19A0A087WUL8 3843 aa3.26□□□□□ -1.89
KNL1-201ENST00000346991 ZFHX4Q86UP3 3567 aa3.26□□□□□ -1.89
KNL1-201ENST00000346991 SPEGQ15772 3267 aa3.25□□□□□ -1.89
KNL1-201ENST00000346991 HRNRQ86YZ3 2850 aaPredicted RBP3.25□□□□□ -1.89
KNL1-201ENST00000346991 KRTAP10-5P60370 271 aa3.21□□□□□ -1.9
KNL1-201ENST00000346991 BRCA2P51587 3418 aa3.21□□□□□ -1.9
KNL1-201ENST00000346991 KRTAP8-1Q8IUC2 63 aa3.21□□□□□ -1.9
KNL1-201ENST00000346991 KRTAP3-1Q9BYR8 98 aa3.18□□□□□ -1.9
KNL1-201ENST00000346991 SZT2Q5T011 3432 aa3.13□□□□□ -1.91
KNL1-201ENST00000346991 CDH23Q9H251 3354 aa3.13□□□□□ -1.91
KNL1-201ENST00000346991 LORP23490 312 aaPredicted RBP3.11□□□□□ -1.91
KNL1-201ENST00000346991 ZFHX3Q15911 3703 aa3.11□□□□□ -1.91
KNL1-201ENST00000346991 LCE3AQ5TA76 89 aa3.1□□□□□ -1.91
KNL1-201ENST00000346991 SPTBN5Q9NRC6 3674 aaKnown RBP3.09□□□□□ -1.92
KNL1-201ENST00000346991 KRTAP10-7P60409 375 aaPredicted RBP3.06□□□□□ -1.92
KNL1-201ENST00000346991 EYSQ5T1H1 3165 aa3.06□□□□□ -1.92
KNL1-201ENST00000346991 OTOGQ6ZRI0 2925 aa3.02□□□□□ -1.93
KNL1-201ENST00000346991 MT1HL1P0DM35 61 aa3.02□□□□□ -1.93
KNL1-201ENST00000346991 FBN1P35555 2871 aaKnown RBP3.02□□□□□ -1.93
KNL1-201ENST00000346991 KRTAP3-2Q9BYR7 98 aa3□□□□□ -1.93
KNL1-201ENST00000346991 KRTAP3-3Q9BYR6 98 aa2.99□□□□□ -1.93
KNL1-201ENST00000346991 ASPMQ8IZT6 3477 aa2.98□□□□□ -1.93
KNL1-201ENST00000346991 WDFY3Q8IZQ1 3526 aa2.98□□□□□ -1.93
KNL1-201ENST00000346991 SPENQ96T58 3664 aaKnown RBP2.96□□□□□ -1.94
KNL1-201ENST00000346991 KRTAP19-4Q3LI73 84 aa2.95□□□□□ -1.94
KNL1-201ENST00000346991 DMDP11532 3685 aa2.94□□□□□ -1.94
KNL1-201ENST00000346991 LOC400499M0QZD8 3231 aa2.94□□□□□ -1.94
KNL1-201ENST00000346991 MYO15AQ9UKN7 3530 aa2.93□□□□□ -1.94
KNL1-201ENST00000346991 SPRR2FQ96RM1 72 aa2.91□□□□□ -1.94
KNL1-201ENST00000346991 ALMS1Q8TCU4 4167 aa2.91□□□□□ -1.94
KNL1-201ENST00000346991 BSNQ9UPA5 3926 aa2.9□□□□□ -1.95
KNL1-201ENST00000346991 KRTAP4-5Q9BYR2 181 aa2.89□□□□□ -1.95
KNL1-201ENST00000346991 TRRAPQ9Y4A5 3859 aa2.86□□□□□ -1.95
KNL1-201ENST00000346991 DCHS1Q96JQ0 3298 aa2.84□□□□□ -1.95
KNL1-201ENST00000346991 AKAP9Q99996 3911 aa2.83□□□□□ -1.96
KNL1-201ENST00000346991 LAMA5O15230 3695 aa2.83□□□□□ -1.96
KNL1-201ENST00000346991 SMG1Q96Q15 3661 aaKnown RBP2.82□□□□□ -1.96
KNL1-201ENST00000346991 LCE3CQ5T5A8 94 aa2.8□□□□□ -1.96
KNL1-201ENST00000346991 SPRR2EP22531 72 aa2.78□□□□□ -1.96
KNL1-201ENST00000346991 SPRR2BP35325 72 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms