RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TGP01266 2768 aa13.38□□□□□ -0.27
TRIM28-202ENST00000341753 CDK2AP2O75956 126 aa13.38□□□□□ -0.27
TRIM28-202ENST00000341753 HECTD4Q9Y4D8 3996 aa13.38□□□□□ -0.27
TRIM28-202ENST00000341753 ATP11AUNQ6ZP68 121 aa13.37□□□□□ -0.27
TRIM28-202ENST00000341753 FRAS1Q86XX4 4008 aa13.36□□□□□ -0.27
TRIM28-202ENST00000341753 MRPL34Q9BQ48 92 aaKnown RBP13.36□□□□□ -0.27
TRIM28-202ENST00000341753 LINC01558Q9Y6Z2 57 aa13.36□□□□□ -0.27
TRIM28-202ENST00000341753 KTN1-AS1Q86SY8 53 aa13.35□□□□□ -0.27
TRIM28-202ENST00000341753 SPINK7P58062 85 aa13.34□□□□□ -0.27
TRIM28-202ENST00000341753 CDC42SE1Q9NRR8 79 aa13.33□□□□□ -0.27
TRIM28-202ENST00000341753 SPINK6Q6UWN8 80 aa13.33□□□□□ -0.28
TRIM28-202ENST00000341753 SPACA4Q8TDM5 124 aa13.33□□□□□ -0.28
TRIM28-202ENST00000341753 WWC2-AS2Q96NR7 200 aa13.33□□□□□ -0.28
TRIM28-202ENST00000341753 PLAC8Q9NZF1 115 aa13.31□□□□□ -0.28
TRIM28-202ENST00000341753 LINC00483Q53H64 154 aa13.31□□□□□ -0.28
TRIM28-202ENST00000341753 A6NN06 94 aa13.3□□□□□ -0.28
TRIM28-202ENST00000341753 PRR26Q8N8Z3 221 aa13.28□□□□□ -0.28
TRIM28-202ENST00000341753 A0A087WTM6 91 aa13.27□□□□□ -0.28
TRIM28-202ENST00000341753 Q5W150 140 aa13.27□□□□□ -0.28
TRIM28-202ENST00000341753 PSORS1C2Q9UIG4 136 aa13.27□□□□□ -0.28
TRIM28-202ENST00000341753 FBN3Q75N90 2809 aa13.24□□□□□ -0.29
TRIM28-202ENST00000341753 DNAH8Q96JB1 4490 aa13.24□□□□□ -0.29
TRIM28-202ENST00000341753 DNAH17Q9UFH2 4485 aa13.23□□□□□ -0.29
TRIM28-202ENST00000341753 RBM12B-AS1Q9P1G2 102 aa13.23□□□□□ -0.29
TRIM28-202ENST00000341753 ZNF706Q9Y5V0 76 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-202ENST00000341753 RTL8CO15255 209 aa13.2□□□□□ -0.3
TRIM28-202ENST00000341753 IGLV5-52A0A0A0MRZ9 124 aa13.19□□□□□ -0.3
TRIM28-202ENST00000341753 DNAH6Q9C0G6 4158 aa13.15□□□□□ -0.3
TRIM28-202ENST00000341753 CIRBP-AS1Q8TBR5 109 aa13.14□□□□□ -0.31
TRIM28-202ENST00000341753 ZNF861PO60384 105 aa13.14□□□□□ -0.31
TRIM28-202ENST00000341753 RETNLBQ9BQ08 111 aa13.13□□□□□ -0.31
TRIM28-202ENST00000341753 KRTAP13-3Q3SY46 172 aa13.11□□□□□ -0.31
TRIM28-202ENST00000341753 LY6G6CO95867 125 aa13.09□□□□□ -0.31
TRIM28-202ENST00000341753 C7orf65Q6ZTY9 151 aa13.08□□□□□ -0.32
TRIM28-202ENST00000341753 DNAH11Q96DT5 4516 aa13.04□□□□□ -0.32
TRIM28-202ENST00000341753 C1orf134Q5TEV5 83 aa13.03□□□□□ -0.32
TRIM28-202ENST00000341753 ACYP2P14621 99 aa13.03□□□□□ -0.32
TRIM28-202ENST00000341753 DNAH5Q8TE73 4624 aa13.02□□□□□ -0.32
TRIM28-202ENST00000341753 HYDINQ4G0P3 5121 aa13.01□□□□□ -0.33
TRIM28-202ENST00000341753 ALMS1Q8TCU4 4167 aa12.97□□□□□ -0.33
TRIM28-202ENST00000341753 IGLV7-43P04211 117 aa12.95□□□□□ -0.34
TRIM28-202ENST00000341753 KRTAP10-2P60368 255 aa12.93□□□□□ -0.34
TRIM28-202ENST00000341753 DMAC1Q96GE9 116 aa12.92□□□□□ -0.34
TRIM28-202ENST00000341753 PRAC1Q96KF2 57 aa12.92□□□□□ -0.34
TRIM28-202ENST00000341753 LINC00313P59037 77 aa12.9□□□□□ -0.34
TRIM28-202ENST00000341753 A0A1B0GU69 56 aa12.88□□□□□ -0.35
TRIM28-202ENST00000341753 C8orf87E5RJ46 101 aa12.87□□□□□ -0.35
TRIM28-202ENST00000341753 ADM2Q7Z4H4 148 aa12.87□□□□□ -0.35
TRIM28-202ENST00000341753 LRP1BQ9NZR2 4599 aa12.86□□□□□ -0.35
TRIM28-202ENST00000341753 FAM229AH3BQW9 127 aa12.83□□□□□ -0.36
TRIM28-202ENST00000341753 FAT2Q9NYQ8 4349 aa12.81□□□□□ -0.36
TRIM28-202ENST00000341753 IGKV2-30P06310 120 aa12.81□□□□□ -0.36
TRIM28-202ENST00000341753 PKD1P98161 4303 aa12.81□□□□□ -0.36
TRIM28-202ENST00000341753 SSBP3-AS1Q7Z2R9 100 aa12.8□□□□□ -0.36
TRIM28-202ENST00000341753 IGKV2D-30A0A075B6S6 120 aa12.77□□□□□ -0.37
TRIM28-202ENST00000341753 KRTAP13-2Q52LG2 175 aa12.74□□□□□ -0.37
TRIM28-202ENST00000341753 KRTAP10-1P60331 282 aa12.73□□□□□ -0.37
TRIM28-202ENST00000341753 SPATA8Q6RVD6 105 aa12.7□□□□□ -0.38
TRIM28-202ENST00000341753 MIR22HGQ0VDD5 57 aa12.69□□□□□ -0.38
TRIM28-202ENST00000341753 KRTAP16-1A8MUX0 517 aa12.69□□□□□ -0.38
TRIM28-202ENST00000341753 VPS13BQ7Z7G8 4022 aa12.68□□□□□ -0.38
TRIM28-202ENST00000341753 UQCR11O14957 56 aa12.64□□□□□ -0.39
TRIM28-202ENST00000341753 PKHD1P08F94 4074 aa12.64□□□□□ -0.39
TRIM28-202ENST00000341753 PLA2G1BP04054 148 aaKnown RBP12.63□□□□□ -0.39
TRIM28-202ENST00000341753 SPINK1P00995 79 aa12.61□□□□□ -0.39
TRIM28-202ENST00000341753 Q6ZSA8 131 aa12.56□□□□□ -0.4
TRIM28-202ENST00000341753 SACSQ9NZJ4 4579 aa12.55□□□□□ -0.4
TRIM28-202ENST00000341753 Q8N1X5 172 aa12.53□□□□□ -0.4
TRIM28-202ENST00000341753 KRTAP1-4P0C5Y4 121 aa12.47□□□□□ -0.41
TRIM28-202ENST00000341753 LINC01554Q52M75 96 aa12.46□□□□□ -0.42
TRIM28-202ENST00000341753 CSAG1Q6PB30 78 aa12.42□□□□□ -0.42
TRIM28-202ENST00000341753 C4orf48Q5BLP8 95 aa12.4□□□□□ -0.42
TRIM28-202ENST00000341753 DYNC1H1Q14204 4646 aaKnown RBP12.37□□□□□ -0.43
TRIM28-202ENST00000341753 TYMSOSQ8TAI1 123 aa12.36□□□□□ -0.43
TRIM28-202ENST00000341753 FAT1Q14517 4588 aa12.35□□□□□ -0.43
TRIM28-202ENST00000341753 SMR3BP02814 79 aaPredicted RBP12.33□□□□□ -0.44
TRIM28-202ENST00000341753 H0YAA0 97 aa12.23□□□□□ -0.45
TRIM28-202ENST00000341753 C9orf92A6NGG3 77 aa12.19□□□□□ -0.46
TRIM28-202ENST00000341753 APOBP04114 4563 aaKnown RBP12.19□□□□□ -0.46
TRIM28-202ENST00000341753 KRTAP21-3Q3LHN1 58 aa12.18□□□□□ -0.46
TRIM28-202ENST00000341753 KMT2CQ8NEZ4 4911 aaKnown RBP12.16□□□□□ -0.46
TRIM28-202ENST00000341753 LINC00304Q8N9R0 145 aa12.15□□□□□ -0.47
TRIM28-202ENST00000341753 RYR2Q92736 4967 aa12.11□□□□□ -0.47
TRIM28-202ENST00000341753 KRTAP3-1Q9BYR8 98 aa12.1□□□□□ -0.47
TRIM28-202ENST00000341753 A8MUU9 505 aa12.1□□□□□ -0.47
TRIM28-202ENST00000341753 A0A1B0GU33 70 aa12.07□□□□□ -0.48
TRIM28-202ENST00000341753 A0A1B0GVY2 172 aa12.03□□□□□ -0.48
TRIM28-202ENST00000341753 FLG2Q5D862 2391 aaPredicted RBP12.03□□□□□ -0.48
TRIM28-202ENST00000341753 H1FX-AS1Q4G0G2 97 aa11.99□□□□□ -0.49
TRIM28-202ENST00000341753 PKHD1L1Q86WI1 4243 aa11.97□□□□□ -0.49
TRIM28-202ENST00000341753 KRTAP10-4P60372 401 aaPredicted RBP11.96□□□□□ -0.49
TRIM28-202ENST00000341753 CRIPTQ9P021 101 aa11.95□□□□□ -0.5
TRIM28-202ENST00000341753 C20orf166-AS1Q96NR2 134 aa11.94□□□□□ -0.5
TRIM28-202ENST00000341753 KRTAP25-1Q3LHN0 102 aa11.93□□□□□ -0.5
TRIM28-202ENST00000341753 H3BS24 57 aa11.93□□□□□ -0.5
TRIM28-202ENST00000341753 RPS29P62273 56 aaKnown RBP11.9□□□□□ -0.5
TRIM28-202ENST00000341753 LRP1Q07954 4544 aaKnown RBP11.89□□□□□ -0.51
TRIM28-202ENST00000341753 COX6B2Q6YFQ2 88 aa11.81□□□□□ -0.52
TRIM28-202ENST00000341753 RYR3Q15413 4870 aa11.77□□□□□ -0.52
TRIM28-202ENST00000341753 HSPG2P98160 4391 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 115.5 ms