RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 C1orf195Q5TG92 126 aa14.46□□□□□ -0.09
SPTSSA-201ENST00000298130 CIRBP-AS1Q8TBR5 109 aa14.46□□□□□ -0.09
SPTSSA-201ENST00000298130 PLAC8Q9NZF1 115 aa14.45□□□□□ -0.1
SPTSSA-201ENST00000298130 PRR15LQ9BU68 103 aa14.45□□□□□ -0.1
SPTSSA-201ENST00000298130 IGLV7-46A0A075B6I9 117 aa14.44□□□□□ -0.1
SPTSSA-201ENST00000298130 MRPL34Q9BQ48 92 aaKnown RBP14.42□□□□□ -0.1
SPTSSA-201ENST00000298130 Q6ZR54 194 aa14.41□□□□□ -0.1
SPTSSA-201ENST00000298130 TP53AIP1Q9HCN2 124 aa14.41□□□□□ -0.1
SPTSSA-201ENST00000298130 CHKB-CPT1BH3BT56 60 aa14.4□□□□□ -0.1
SPTSSA-201ENST00000298130 V9GYY9 64 aa14.37□□□□□ -0.11
SPTSSA-201ENST00000298130 LY6G6CO95867 125 aa14.35□□□□□ -0.11
SPTSSA-201ENST00000298130 Q5W150 140 aa14.35□□□□□ -0.11
SPTSSA-201ENST00000298130 DNHD1Q96M86 4753 aa14.35□□□□□ -0.11
SPTSSA-201ENST00000298130 ALMS1Q8TCU4 4167 aa14.35□□□□□ -0.11
SPTSSA-201ENST00000298130 IGLV7-43P04211 117 aa14.34□□□□□ -0.11
SPTSSA-201ENST00000298130 DNAH11Q96DT5 4516 aa14.34□□□□□ -0.11
SPTSSA-201ENST00000298130 C1orf134Q5TEV5 83 aa14.34□□□□□ -0.11
SPTSSA-201ENST00000298130 SPAG11AQ6PDA7 123 aa14.34□□□□□ -0.11
SPTSSA-201ENST00000298130 RETNLBQ9BQ08 111 aa14.29□□□□□ -0.12
SPTSSA-201ENST00000298130 LIMD2Q9BT23 127 aa14.29□□□□□ -0.12
SPTSSA-201ENST00000298130 DNAH5Q8TE73 4624 aa14.27□□□□□ -0.12
SPTSSA-201ENST00000298130 KRTAP10-2P60368 255 aa14.27□□□□□ -0.12
SPTSSA-201ENST00000298130 HRES1P13985 223 aa14.26□□□□□ -0.13
SPTSSA-201ENST00000298130 A6NED7 52 aa14.2□□□□□ -0.14
SPTSSA-201ENST00000298130 SPTSSBQ8NFR3 76 aa14.19□□□□□ -0.14
SPTSSA-201ENST00000298130 LRP1BQ9NZR2 4599 aa14.18□□□□□ -0.14
SPTSSA-201ENST00000298130 LCA10Q71F78 164 aa14.17□□□□□ -0.14
SPTSSA-201ENST00000298130 PRR26Q8N8Z3 221 aa14.17□□□□□ -0.14
SPTSSA-201ENST00000298130 PMAIP1Q13794 54 aa14.12□□□□□ -0.15
SPTSSA-201ENST00000298130 KRTAP13-3Q3SY46 172 aa14.11□□□□□ -0.15
SPTSSA-201ENST00000298130 Q75L30 129 aa14.11□□□□□ -0.15
SPTSSA-201ENST00000298130 LOC101927531A0A1B0GV80 90 aa14.1□□□□□ -0.15
SPTSSA-201ENST00000298130 HYDINQ4G0P3 5121 aa14.09□□□□□ -0.15
SPTSSA-201ENST00000298130 KRTAP13-2Q52LG2 175 aa14.09□□□□□ -0.15
SPTSSA-201ENST00000298130 SSBP3-AS1Q7Z2R9 100 aa14.06□□□□□ -0.16
SPTSSA-201ENST00000298130 LINC00313P59037 77 aa14.05□□□□□ -0.16
SPTSSA-201ENST00000298130 LINC01558Q9Y6Z2 57 aa14.05□□□□□ -0.16
SPTSSA-201ENST00000298130 KRTAP10-1P60331 282 aa14.04□□□□□ -0.16
SPTSSA-201ENST00000298130 SPINK7P58062 85 aa14.03□□□□□ -0.16
SPTSSA-201ENST00000298130 VPS13BQ7Z7G8 4022 aa13.96□□□□□ -0.17
SPTSSA-201ENST00000298130 C8orf87E5RJ46 101 aa13.95□□□□□ -0.18
SPTSSA-201ENST00000298130 PKD1P98161 4303 aa13.94□□□□□ -0.18
SPTSSA-201ENST00000298130 FAT2Q9NYQ8 4349 aa13.91□□□□□ -0.18
SPTSSA-201ENST00000298130 ACYP2P14621 99 aa13.89□□□□□ -0.19
SPTSSA-201ENST00000298130 CDC42SE1Q9NRR8 79 aa13.88□□□□□ -0.19
SPTSSA-201ENST00000298130 FAM229AH3BQW9 127 aa13.86□□□□□ -0.19
SPTSSA-201ENST00000298130 IGKV2D-30A0A075B6S6 120 aa13.86□□□□□ -0.19
SPTSSA-201ENST00000298130 IGKV2-30P06310 120 aa13.86□□□□□ -0.19
SPTSSA-201ENST00000298130 KRTAP1-4P0C5Y4 121 aa13.86□□□□□ -0.19
SPTSSA-201ENST00000298130 ATP11AUNQ6ZP68 121 aa13.85□□□□□ -0.19
SPTSSA-201ENST00000298130 KRTAP16-1A8MUX0 517 aa13.82□□□□□ -0.2
SPTSSA-201ENST00000298130 Q6ZSA8 131 aa13.82□□□□□ -0.2
SPTSSA-201ENST00000298130 SEC61GP60059 68 aa13.81□□□□□ -0.2
SPTSSA-201ENST00000298130 DMAC1Q96GE9 116 aa13.81□□□□□ -0.2
SPTSSA-201ENST00000298130 PLA2G1BP04054 148 aaKnown RBP13.79□□□□□ -0.2
SPTSSA-201ENST00000298130 PKHD1P08F94 4074 aa13.75□□□□□ -0.21
SPTSSA-201ENST00000298130 A6NN06 94 aa13.74□□□□□ -0.21
SPTSSA-201ENST00000298130 TYMSOSQ8TAI1 123 aa13.71□□□□□ -0.21
SPTSSA-201ENST00000298130 C4orf48Q5BLP8 95 aa13.71□□□□□ -0.21
SPTSSA-201ENST00000298130 KTN1-AS1Q86SY8 53 aa13.69□□□□□ -0.22
SPTSSA-201ENST00000298130 A0A1B0GU69 56 aa13.64□□□□□ -0.23
SPTSSA-201ENST00000298130 C7orf65Q6ZTY9 151 aa13.63□□□□□ -0.23
SPTSSA-201ENST00000298130 SMR3BP02814 79 aaPredicted RBP13.62□□□□□ -0.23
SPTSSA-201ENST00000298130 SPINK1P00995 79 aa13.6□□□□□ -0.23
SPTSSA-201ENST00000298130 Q8N1X5 172 aa13.58□□□□□ -0.24
SPTSSA-201ENST00000298130 FAT1Q14517 4588 aa13.53□□□□□ -0.24
SPTSSA-201ENST00000298130 C9orf92A6NGG3 77 aa13.49□□□□□ -0.25
SPTSSA-201ENST00000298130 RBM12B-AS1Q9P1G2 102 aa13.49□□□□□ -0.25
SPTSSA-201ENST00000298130 LINC00304Q8N9R0 145 aa13.48□□□□□ -0.25
SPTSSA-201ENST00000298130 DYNC1H1Q14204 4646 aaKnown RBP13.45□□□□□ -0.26
SPTSSA-201ENST00000298130 SACSQ9NZJ4 4579 aa13.44□□□□□ -0.26
SPTSSA-201ENST00000298130 PRAC1Q96KF2 57 aa13.4□□□□□ -0.26
SPTSSA-201ENST00000298130 ADM2Q7Z4H4 148 aa13.4□□□□□ -0.26
SPTSSA-201ENST00000298130 MIR22HGQ0VDD5 57 aa13.37□□□□□ -0.27
SPTSSA-201ENST00000298130 UQCR11O14957 56 aa13.33□□□□□ -0.27
SPTSSA-201ENST00000298130 SPATA8Q6RVD6 105 aa13.33□□□□□ -0.27
SPTSSA-201ENST00000298130 APOBP04114 4563 aaKnown RBP13.2□□□□□ -0.3
SPTSSA-201ENST00000298130 KRTAP3-1Q9BYR8 98 aa13.15□□□□□ -0.3
SPTSSA-201ENST00000298130 RPS29P62273 56 aaKnown RBP13.13□□□□□ -0.31
SPTSSA-201ENST00000298130 KRTAP21-3Q3LHN1 58 aa13.12□□□□□ -0.31
SPTSSA-201ENST00000298130 PKHD1L1Q86WI1 4243 aa13.11□□□□□ -0.31
SPTSSA-201ENST00000298130 A8MUU9 505 aa13.1□□□□□ -0.31
SPTSSA-201ENST00000298130 KRTAP10-4P60372 401 aaPredicted RBP13.1□□□□□ -0.31
SPTSSA-201ENST00000298130 C20orf166-AS1Q96NR2 134 aa13.09□□□□□ -0.31
SPTSSA-201ENST00000298130 LRP1Q07954 4544 aaKnown RBP13.05□□□□□ -0.32
SPTSSA-201ENST00000298130 A0A1B0GVY2 172 aa13.03□□□□□ -0.32
SPTSSA-201ENST00000298130 FLG2Q5D862 2391 aaPredicted RBP13.02□□□□□ -0.33
SPTSSA-201ENST00000298130 KMT2CQ8NEZ4 4911 aaKnown RBP13□□□□□ -0.33
SPTSSA-201ENST00000298130 H0YAA0 97 aa12.98□□□□□ -0.33
SPTSSA-201ENST00000298130 RYR2Q92736 4967 aa12.92□□□□□ -0.34
SPTSSA-201ENST00000298130 MYCBP2O75592 4640 aa12.92□□□□□ -0.34
SPTSSA-201ENST00000298130 DMBT1Q9UGM3 2413 aaPredicted RBP12.91□□□□□ -0.34
SPTSSA-201ENST00000298130 CSAG1Q6PB30 78 aa12.89□□□□□ -0.35
SPTSSA-201ENST00000298130 A0A1B0GU33 70 aa12.87□□□□□ -0.35
SPTSSA-201ENST00000298130 FAT3Q8TDW7 4589 aa12.84□□□□□ -0.35
SPTSSA-201ENST00000298130 HSPG2P98160 4391 aa12.81□□□□□ -0.36
SPTSSA-201ENST00000298130 H1FX-AS1Q4G0G2 97 aa12.79□□□□□ -0.36
SPTSSA-201ENST00000298130 COX6B2Q6YFQ2 88 aa12.78□□□□□ -0.36
SPTSSA-201ENST00000298130 TNXBP22105 4242 aa12.75□□□□□ -0.37
SPTSSA-201ENST00000298130 LINC01554Q52M75 96 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms