RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 TNRC18O15417 2968 aaPredicted RBP4.64□□□□□ -1.67
NIPBL-201ENST00000282516 VWFP04275 2813 aa4.63□□□□□ -1.67
NIPBL-201ENST00000282516 XP32Q5T750 250 aa4.63□□□□□ -1.67
NIPBL-201ENST00000282516 TRIOO75962 3097 aa4.61□□□□□ -1.67
NIPBL-201ENST00000282516 DCHS2Q6V1P9 2916 aa4.61□□□□□ -1.67
NIPBL-201ENST00000282516 KRTAP10-10P60014 251 aa4.6□□□□□ -1.67
NIPBL-201ENST00000282516 TPRXLQ17RH7 258 aa4.58□□□□□ -1.68
NIPBL-201ENST00000282516 PKD1L1Q8TDX9 2849 aa4.58□□□□□ -1.68
NIPBL-201ENST00000282516 TENM2Q9NT68 2774 aa4.58□□□□□ -1.68
NIPBL-201ENST00000282516 A0A1B0GVY2 172 aa4.57□□□□□ -1.68
NIPBL-201ENST00000282516 ZANQ9Y493 2812 aa4.55□□□□□ -1.68
NIPBL-201ENST00000282516 SRRM2Q9UQ35 2752 aaKnown RBP4.54□□□□□ -1.68
NIPBL-201ENST00000282516 TACC2O95359 2948 aa4.53□□□□□ -1.68
NIPBL-201ENST00000282516 DMXL2Q8TDJ6 3036 aa4.52□□□□□ -1.69
NIPBL-201ENST00000282516 ZZEF1O43149 2961 aa4.51□□□□□ -1.69
NIPBL-201ENST00000282516 COL12A1Q99715 3063 aa4.48□□□□□ -1.69
NIPBL-201ENST00000282516 KRTAP1-4P0C5Y4 121 aa4.47□□□□□ -1.69
NIPBL-201ENST00000282516 PRUNE2Q8WUY3 3088 aa4.47□□□□□ -1.69
NIPBL-201ENST00000282516 MXRA5Q9NR99 2828 aa4.45□□□□□ -1.7
NIPBL-201ENST00000282516 KRTAP21-3Q3LHN1 58 aa4.45□□□□□ -1.7
NIPBL-201ENST00000282516 KRTAP13-4Q3LI77 160 aa4.42□□□□□ -1.7
NIPBL-201ENST00000282516 KRTAP12-2P59991 146 aa4.42□□□□□ -1.7
NIPBL-201ENST00000282516 KRTAP13-3Q3SY46 172 aa4.42□□□□□ -1.7
NIPBL-201ENST00000282516 REV3LO60673 3130 aa4.41□□□□□ -1.7
NIPBL-201ENST00000282516 FBN2P35556 2912 aa4.39□□□□□ -1.71
NIPBL-201ENST00000282516 WDFY4Q6ZS81 3184 aa4.39□□□□□ -1.71
NIPBL-201ENST00000282516 NBEAQ8NFP9 2946 aa4.38□□□□□ -1.71
NIPBL-201ENST00000282516 VPS13AQ96RL7 3174 aa4.37□□□□□ -1.71
NIPBL-201ENST00000282516 KRTAP15-1Q3LI76 137 aa4.33□□□□□ -1.72
NIPBL-201ENST00000282516 LAMA1P25391 3075 aa4.32□□□□□ -1.72
NIPBL-201ENST00000282516 COL7A1Q02388 2944 aa4.32□□□□□ -1.72
NIPBL-201ENST00000282516 HRNRQ86YZ3 2850 aaPredicted RBP4.31□□□□□ -1.72
NIPBL-201ENST00000282516 DMXL1Q9Y485 3027 aa4.3□□□□□ -1.72
NIPBL-201ENST00000282516 INE1O15225 51 aa4.29□□□□□ -1.72
NIPBL-201ENST00000282516 CELSR1Q9NYQ6 3014 aa4.28□□□□□ -1.72
NIPBL-201ENST00000282516 UTRNP46939 3433 aa4.27□□□□□ -1.73
NIPBL-201ENST00000282516 KRTAP12-1P59990 96 aa4.25□□□□□ -1.73
NIPBL-201ENST00000282516 GOLGB1Q14789 3259 aaKnown RBP4.24□□□□□ -1.73
NIPBL-201ENST00000282516 ATMQ13315 3056 aa4.23□□□□□ -1.73
NIPBL-201ENST00000282516 FREM2Q5SZK8 3169 aa4.23□□□□□ -1.73
NIPBL-201ENST00000282516 MEGF8Q7Z7M0 2845 aa4.19□□□□□ -1.74
NIPBL-201ENST00000282516 ADGRG4Q8IZF6 3080 aa4.18□□□□□ -1.74
NIPBL-201ENST00000282516 FBN3Q75N90 2809 aa4.16□□□□□ -1.74
NIPBL-201ENST00000282516 RANBP2P49792 3224 aaKnown RBP4.14□□□□□ -1.75
NIPBL-201ENST00000282516 BOD1L1Q8NFC6 3051 aa4.13□□□□□ -1.75
NIPBL-201ENST00000282516 HTTP42858 3142 aa4.12□□□□□ -1.75
NIPBL-201ENST00000282516 XIRP2A4UGR9 3374 aa4.09□□□□□ -1.75
NIPBL-201ENST00000282516 KRTAP10-12P60413 245 aa4.06□□□□□ -1.76
NIPBL-201ENST00000282516 FBN1P35555 2871 aaKnown RBP4.02□□□□□ -1.77
NIPBL-201ENST00000282516 COL6A3P12111 3177 aa4.01□□□□□ -1.77
NIPBL-201ENST00000282516 MKI67P46013 3256 aaKnown RBP4□□□□□ -1.77
NIPBL-201ENST00000282516 CRCT1Q9UGL9 99 aa4□□□□□ -1.77
NIPBL-201ENST00000282516 KRTAP3-1Q9BYR8 98 aa3.98□□□□□ -1.77
NIPBL-201ENST00000282516 KRTAP10-6P60371 365 aaPredicted RBP3.97□□□□□ -1.77
NIPBL-201ENST00000282516 USP34Q70CQ2 3546 aa3.95□□□□□ -1.78
NIPBL-201ENST00000282516 KRTAP12-3P60328 96 aa3.91□□□□□ -1.78
NIPBL-201ENST00000282516 KRTAP23-1A1A580 65 aa3.91□□□□□ -1.78
NIPBL-201ENST00000282516 UNC80Q8N2C7 3258 aa3.88□□□□□ -1.79
NIPBL-201ENST00000282516 OTOGQ6ZRI0 2925 aa3.87□□□□□ -1.79
NIPBL-201ENST00000282516 LAMA3Q16787 3333 aa3.86□□□□□ -1.79
NIPBL-201ENST00000282516 CFAP47Q6ZTR5 3102 aa3.85□□□□□ -1.79
NIPBL-201ENST00000282516 CELSR3Q9NYQ7 3312 aa3.85□□□□□ -1.79
NIPBL-201ENST00000282516 VCANP13611 3396 aa3.84□□□□□ -1.79
NIPBL-201ENST00000282516 SPTBN5Q9NRC6 3674 aaKnown RBP3.79□□□□□ -1.8
NIPBL-201ENST00000282516 KRTAP10-5P60370 271 aa3.79□□□□□ -1.8
NIPBL-201ENST00000282516 EYSQ5T1H1 3165 aa3.79□□□□□ -1.8
NIPBL-201ENST00000282516 KRTAP3-2Q9BYR7 98 aa3.78□□□□□ -1.8
NIPBL-201ENST00000282516 DNAH14Q0VDD8 3507 aa3.77□□□□□ -1.81
NIPBL-201ENST00000282516 SPEGQ15772 3267 aa3.76□□□□□ -1.81
NIPBL-201ENST00000282516 ZFHX4Q86UP3 3567 aa3.76□□□□□ -1.81
NIPBL-201ENST00000282516 LCE3AQ5TA76 89 aa3.74□□□□□ -1.81
NIPBL-201ENST00000282516 KRTAP3-3Q9BYR6 98 aa3.73□□□□□ -1.81
NIPBL-201ENST00000282516 BRCA2P51587 3418 aa3.72□□□□□ -1.81
NIPBL-201ENST00000282516 ZFHX3Q15911 3703 aa3.71□□□□□ -1.82
NIPBL-201ENST00000282516 NBPF19A0A087WUL8 3843 aa3.7□□□□□ -1.82
NIPBL-201ENST00000282516 KRTAP8-1Q8IUC2 63 aa3.69□□□□□ -1.82
NIPBL-201ENST00000282516 MYO15AQ9UKN7 3530 aa3.68□□□□□ -1.82
NIPBL-201ENST00000282516 MT1HL1P0DM35 61 aa3.66□□□□□ -1.82
NIPBL-201ENST00000282516 DMDP11532 3685 aa3.62□□□□□ -1.83
NIPBL-201ENST00000282516 WDFY3Q8IZQ1 3526 aa3.55□□□□□ -1.84
NIPBL-201ENST00000282516 CDH23Q9H251 3354 aa3.53□□□□□ -1.84
NIPBL-201ENST00000282516 TRRAPQ9Y4A5 3859 aa3.52□□□□□ -1.85
NIPBL-201ENST00000282516 SZT2Q5T011 3432 aa3.5□□□□□ -1.85
NIPBL-201ENST00000282516 LOC400499M0QZD8 3231 aa3.5□□□□□ -1.85
NIPBL-201ENST00000282516 SPENQ96T58 3664 aaKnown RBP3.49□□□□□ -1.85
NIPBL-201ENST00000282516 KRTAP10-7P60409 375 aaPredicted RBP3.48□□□□□ -1.85
NIPBL-201ENST00000282516 BSNQ9UPA5 3926 aa3.47□□□□□ -1.85
NIPBL-201ENST00000282516 LORP23490 312 aaPredicted RBP3.47□□□□□ -1.85
NIPBL-201ENST00000282516 DCHS1Q96JQ0 3298 aa3.46□□□□□ -1.86
NIPBL-201ENST00000282516 ALMS1Q8TCU4 4167 aa3.46□□□□□ -1.86
NIPBL-201ENST00000282516 SMG1Q96Q15 3661 aaKnown RBP3.44□□□□□ -1.86
NIPBL-201ENST00000282516 KRTAP10-4P60372 401 aaPredicted RBP3.44□□□□□ -1.86
NIPBL-201ENST00000282516 KRTAP19-4Q3LI73 84 aa3.4□□□□□ -1.86
NIPBL-201ENST00000282516 KRTAP4-5Q9BYR2 181 aa3.4□□□□□ -1.86
NIPBL-201ENST00000282516 AKAP9Q99996 3911 aa3.39□□□□□ -1.87
NIPBL-201ENST00000282516 LCE3CQ5T5A8 94 aa3.37□□□□□ -1.87
NIPBL-201ENST00000282516 SPRR2FQ96RM1 72 aa3.37□□□□□ -1.87
NIPBL-201ENST00000282516 HUWE1Q7Z6Z7 4374 aaKnown RBP3.34□□□□□ -1.88
NIPBL-201ENST00000282516 VPS13CQ709C8 3753 aa3.34□□□□□ -1.88
NIPBL-201ENST00000282516 KRTAP19-5Q3LI72 72 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 191.5 ms