RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 PELP1Q8IZL8 1130 aaKnown RBP14.45□□□□□ -0.1
NIPBL-201ENST00000282516 DCAF8L2P0C7V8 631 aa14.29□□□□□ -0.12
NIPBL-201ENST00000282516 ERICH6Q7L0X2 663 aa13.73□□□□□ -0.21
NIPBL-201ENST00000282516 CCER1Q8TC90 406 aaPredicted RBP13.72□□□□□ -0.21
NIPBL-201ENST00000282516 SUPT5HO00267 1087 aaKnown RBP13.6□□□□□ -0.23
NIPBL-201ENST00000282516 APLP2Q06481 763 aa13.6□□□□□ -0.23
NIPBL-201ENST00000282516 MYT1Q01538 1121 aa13.54□□□□□ -0.24
NIPBL-201ENST00000282516 FAM9AQ8IZU1 332 aaPredicted RBP13.48□□□□□ -0.25
NIPBL-201ENST00000282516 CENPBP07199 599 aaPredicted RBP13.45□□□□□ -0.26
NIPBL-201ENST00000282516 EHMT2Q96KQ7 1210 aa13.37□□□□□ -0.27
NIPBL-201ENST00000282516 NEFLP07196 543 aa13.29□□□□□ -0.28
NIPBL-201ENST00000282516 SHROOM4Q9ULL8 1493 aa13.19□□□□□ -0.3
NIPBL-201ENST00000282516 ZEB1P37275 1124 aaPredicted RBP13.18□□□□□ -0.3
NIPBL-201ENST00000282516 YTHDC1Q96MU7 727 aaKnown RBP13.17□□□□□ -0.3
NIPBL-201ENST00000282516 DAXXQ9UER7 740 aaPredicted RBP13.12□□□□□ -0.31
NIPBL-201ENST00000282516 PCGF6Q9BYE7 350 aa13.07□□□□□ -0.32
NIPBL-201ENST00000282516 TTBK1Q5TCY1 1321 aaPredicted RBP13.05□□□□□ -0.32
NIPBL-201ENST00000282516 NISCHQ9Y2I1 1504 aa12.84□□□□□ -0.35
NIPBL-201ENST00000282516 ATP1B4Q9UN42 357 aaPredicted RBP12.82□□□□□ -0.36
NIPBL-201ENST00000282516 RANGAP1P46060 587 aaPredicted RBP12.81□□□□□ -0.36
NIPBL-201ENST00000282516 RTL5Q5HYW3 569 aaPredicted RBP12.78□□□□□ -0.36
NIPBL-201ENST00000282516 ZNF316A6NFI3 1004 aaPredicted RBP12.77□□□□□ -0.36
NIPBL-201ENST00000282516 UBTFP17480 764 aaKnown RBP12.68□□□□□ -0.38
NIPBL-201ENST00000282516 TRIM41Q8WV44 630 aa12.65□□□□□ -0.38
NIPBL-201ENST00000282516 CLSPNQ9HAW4 1339 aa12.59□□□□□ -0.39
NIPBL-201ENST00000282516 POLR3GLQ9BT43 218 aa12.56□□□□□ -0.4
NIPBL-201ENST00000282516 MYT1LQ9UL68 1186 aa12.49□□□□□ -0.41
NIPBL-201ENST00000282516 SLC4A1APQ9BWU0 796 aaKnown RBP12.42□□□□□ -0.42
NIPBL-201ENST00000282516 ZBTB47Q9UFB7 747 aaPredicted RBP12.39□□□□□ -0.43
NIPBL-201ENST00000282516 TRIM26Q12899 539 aaPredicted RBP12.38□□□□□ -0.43
NIPBL-201ENST00000282516 HRCP23327 699 aa12.35□□□□□ -0.43
NIPBL-201ENST00000282516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.34□□□□□ -0.43
NIPBL-201ENST00000282516 HNRNPUL2Q1KMD3 747 aaKnown RBP12.34□□□□□ -0.43
NIPBL-201ENST00000282516 ITGAEP38570 1179 aa12.3□□□□□ -0.44
NIPBL-201ENST00000282516 CNGB1Q14028 1251 aaPredicted RBP12.3□□□□□ -0.44
NIPBL-201ENST00000282516 CHIC1Q5VXU3 224 aa12.27□□□□□ -0.45
NIPBL-201ENST00000282516 PPARGC1BQ86YN6 1023 aaKnown RBP12.25□□□□□ -0.45
NIPBL-201ENST00000282516 GLIPR1L2Q4G1C9 344 aa12.23□□□□□ -0.45
NIPBL-201ENST00000282516 ANP32BQ92688 251 aaKnown RBP12.22□□□□□ -0.45
NIPBL-201ENST00000282516 CDK11AQ9UQ88 783 aaPredicted RBP12.21□□□□□ -0.45
NIPBL-201ENST00000282516 CANXP27824 592 aaKnown RBP12.2□□□□□ -0.46
NIPBL-201ENST00000282516 ANP32AP39687 249 aaKnown RBP12.15□□□□□ -0.46
NIPBL-201ENST00000282516 DIEXFQ68CQ4 756 aaKnown RBP12.15□□□□□ -0.46
NIPBL-201ENST00000282516 NEFMP07197 916 aa12.1□□□□□ -0.47
NIPBL-201ENST00000282516 EIF5BO60841 1220 aaKnown RBP12.08□□□□□ -0.48
NIPBL-201ENST00000282516 ANP32CO43423 234 aa12.07□□□□□ -0.48
NIPBL-201ENST00000282516 BCANQ96GW7 911 aa12.07□□□□□ -0.48
NIPBL-201ENST00000282516 SLC24A1O60721 1099 aa12.06□□□□□ -0.48
NIPBL-201ENST00000282516 HSP90AA1P07900 732 aaKnown RBP12.05□□□□□ -0.48
NIPBL-201ENST00000282516 BCL11AQ9H165 835 aa12.02□□□□□ -0.48
NIPBL-201ENST00000282516 FAM50AQ14320 339 aaKnown RBP11.99□□□□□ -0.49
NIPBL-201ENST00000282516 TRIM52Q96A61 297 aa11.99□□□□□ -0.49
NIPBL-201ENST00000282516 UPF2Q9HAU5 1272 aaKnown RBP11.98□□□□□ -0.49
NIPBL-201ENST00000282516 ZNF326Q5BKZ1 582 aaKnown RBP11.97□□□□□ -0.49
NIPBL-201ENST00000282516 CDK11BP21127 795 aaKnown RBP11.96□□□□□ -0.5
NIPBL-201ENST00000282516 GTF3C3Q9Y5Q9 886 aa11.95□□□□□ -0.5
NIPBL-201ENST00000282516 NPM2Q86SE8 214 aaKnown RBP11.92□□□□□ -0.5
NIPBL-201ENST00000282516 NEUROD1Q13562 356 aa11.9□□□□□ -0.5
NIPBL-201ENST00000282516 TNNT2P45379 298 aaPredicted RBP11.82□□□□□ -0.52
NIPBL-201ENST00000282516 LOC105371045A0A1W2PR82 267 aa11.76□□□□□ -0.53
NIPBL-201ENST00000282516 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.75□□□□□ -0.53
NIPBL-201ENST00000282516 MYH16Q9H6N6 1097 aa11.71□□□□□ -0.53
NIPBL-201ENST00000282516 ACIN1Q9UKV3 1341 aaKnown RBP11.7□□□□□ -0.54
NIPBL-201ENST00000282516 ARXQ96QS3 562 aa11.7□□□□□ -0.54
NIPBL-201ENST00000282516 ANP32EQ9BTT0 268 aa11.69□□□□□ -0.54
NIPBL-201ENST00000282516 NBR1Q14596 966 aa11.68□□□□□ -0.54
NIPBL-201ENST00000282516 NCLP19338 710 aaKnown RBP11.67□□□□□ -0.54
NIPBL-201ENST00000282516 ESF1Q9H501 851 aaKnown RBP11.67□□□□□ -0.54
NIPBL-201ENST00000282516 TRIM44Q96DX7 344 aaPredicted RBP11.66□□□□□ -0.54
NIPBL-201ENST00000282516 GOLGA6L22H0YM25 854 aa11.65□□□□□ -0.55
NIPBL-201ENST00000282516 BECN1Q14457 450 aa11.64□□□□□ -0.55
NIPBL-201ENST00000282516 ZRSR1Q15695 479 aaKnown RBP11.64□□□□□ -0.55
NIPBL-201ENST00000282516 CCDC136Q96JN2 1154 aa11.63□□□□□ -0.55
NIPBL-201ENST00000282516 FKBP8Q14318 412 aa11.62□□□□□ -0.55
NIPBL-201ENST00000282516 TONSLQ96HA7 1378 aa11.61□□□□□ -0.55
NIPBL-201ENST00000282516 DDRGK1Q96HY6 314 aa11.6□□□□□ -0.55
NIPBL-201ENST00000282516 PTMAP06454 111 aaKnown RBP11.6□□□□□ -0.55
NIPBL-201ENST00000282516 STAG3Q9UJ98 1225 aa11.59□□□□□ -0.55
NIPBL-201ENST00000282516 HNRNPUQ00839 825 aaKnown RBP eCLIP11.57□□□□□ -0.56
NIPBL-201ENST00000282516 GOLGA6L6A8MZA4 724 aa11.56□□□□□ -0.56
NIPBL-201ENST00000282516 WDR43Q15061 677 aaKnown RBP eCLIP11.54□□□□□ -0.56
NIPBL-201ENST00000282516 FBLN2P98095 1184 aa11.54□□□□□ -0.56
NIPBL-201ENST00000282516 DNTTIP2Q5QJE6 756 aaKnown RBP11.53□□□□□ -0.56
NIPBL-201ENST00000282516 CASC1Q6TDU7 716 aa11.53□□□□□ -0.56
NIPBL-201ENST00000282516 ERICH6BQ5W0A0 696 aa11.51□□□□□ -0.57
NIPBL-201ENST00000282516 NRDCO43847 1150 aa11.5□□□□□ -0.57
NIPBL-201ENST00000282516 FAM9BQ8IZU0 186 aa11.5□□□□□ -0.57
NIPBL-201ENST00000282516 TMC1Q8TDI8 760 aa11.49□□□□□ -0.57
NIPBL-201ENST00000282516 ZNF777Q9ULD5 760 aaPredicted RBP11.48□□□□□ -0.57
NIPBL-201ENST00000282516 NAP1L5Q96NT1 182 aaPredicted RBP11.46□□□□□ -0.57
NIPBL-201ENST00000282516 CHAF1AQ13111 956 aaPredicted RBP11.46□□□□□ -0.58
NIPBL-201ENST00000282516 CHGAP10645 457 aaKnown RBP11.45□□□□□ -0.58
NIPBL-201ENST00000282516 A0A0G2JS52 829 aa11.45□□□□□ -0.58
NIPBL-201ENST00000282516 L1TD1Q5T7N2 865 aaKnown RBP11.42□□□□□ -0.58
NIPBL-201ENST00000282516 SCAF1Q9H7N4 1312 aaKnown RBP11.41□□□□□ -0.58
NIPBL-201ENST00000282516 ARID3CA6NKF2 412 aa11.41□□□□□ -0.58
NIPBL-201ENST00000282516 MRS2Q9HD23 443 aa11.4□□□□□ -0.58
NIPBL-201ENST00000282516 SALL2Q9Y467 1007 aaPredicted RBP11.4□□□□□ -0.58
NIPBL-201ENST00000282516 TULP1O00294 542 aaPredicted RBP11.39□□□□□ -0.59
NIPBL-201ENST00000282516 PPM1GO15355 546 aaPredicted RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms