RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 BSNQ9UPA5 3926 aa6.53□□□□□ -1.36
CD44-201ENST00000263398 ZCCHC13Q8WW36 166 aaKnown RBP6.53□□□□□ -1.36
CD44-201ENST00000263398 Q5W150 140 aa6.51□□□□□ -1.37
CD44-201ENST00000263398 Q5VV11 94 aa6.5□□□□□ -1.37
CD44-201ENST00000263398 KRTAP4-16G5E9R7 235 aaPredicted RBP6.49□□□□□ -1.37
CD44-201ENST00000263398 OXTP01178 125 aa6.49□□□□□ -1.37
CD44-201ENST00000263398 Q6ZSA8 131 aa6.49□□□□□ -1.37
CD44-201ENST00000263398 ZFHX3Q15911 3703 aa6.47□□□□□ -1.37
CD44-201ENST00000263398 TENM1Q9UKZ4 2725 aa6.47□□□□□ -1.37
CD44-201ENST00000263398 FBN1P35555 2871 aaKnown RBP6.43□□□□□ -1.38
CD44-201ENST00000263398 SPINK7P58062 85 aa6.43□□□□□ -1.38
CD44-201ENST00000263398 LINC00483Q53H64 154 aa6.42□□□□□ -1.38
CD44-201ENST00000263398 KRTAP29-1A8MX34 341 aaPredicted RBP6.42□□□□□ -1.38
CD44-201ENST00000263398 DMAC1Q96GE9 116 aa6.42□□□□□ -1.38
CD44-201ENST00000263398 VWFP04275 2813 aa6.42□□□□□ -1.38
CD44-201ENST00000263398 OTOGQ6ZRI0 2925 aa6.42□□□□□ -1.38
CD44-201ENST00000263398 Q6ZR54 194 aa6.4□□□□□ -1.39
CD44-201ENST00000263398 CSAG1Q6PB30 78 aa6.39□□□□□ -1.39
CD44-201ENST00000263398 PRAC1Q96KF2 57 aa6.38□□□□□ -1.39
CD44-201ENST00000263398 PANO1I0J062 215 aa6.37□□□□□ -1.39
CD44-201ENST00000263398 PDZD2O15018 2839 aa6.37□□□□□ -1.39
CD44-201ENST00000263398 LUZP6Q538Z0 58 aa6.37□□□□□ -1.39
CD44-201ENST00000263398 CAMK2N1Q7Z7J9 78 aa6.36□□□□□ -1.39
CD44-201ENST00000263398 KRTAP10-1P60331 282 aa6.36□□□□□ -1.39
CD44-201ENST00000263398 KRTAP10-2P60368 255 aa6.34□□□□□ -1.39
CD44-201ENST00000263398 S4R3F8 94 aa6.34□□□□□ -1.39
CD44-201ENST00000263398 TENM3Q9P273 2699 aa6.34□□□□□ -1.39
CD44-201ENST00000263398 VPS13CQ709C8 3753 aa6.34□□□□□ -1.4
CD44-201ENST00000263398 RPL37P61927 97 aaKnown RBP6.27□□□□□ -1.41
CD44-201ENST00000263398 A0A087X002 238 aa6.27□□□□□ -1.41
CD44-201ENST00000263398 R4GN34 69 aa6.26□□□□□ -1.41
CD44-201ENST00000263398 NOTCH2NLQ7Z3S9 236 aa6.26□□□□□ -1.41
CD44-201ENST00000263398 LCE6AA0A183 80 aa6.25□□□□□ -1.41
CD44-201ENST00000263398 KRTAP11-1Q8IUC1 163 aa6.25□□□□□ -1.41
CD44-201ENST00000263398 KRTAP7-1Q8IUC3 87 aa6.25□□□□□ -1.41
CD44-201ENST00000263398 ASB16-AS1Q495Z4 193 aa6.24□□□□□ -1.41
CD44-201ENST00000263398 H1FX-AS1Q4G0G2 97 aa6.23□□□□□ -1.41
CD44-201ENST00000263398 Q5VSD8 79 aa6.23□□□□□ -1.41
CD44-201ENST00000263398 SEC61BP60468 96 aaKnown RBP6.23□□□□□ -1.41
CD44-201ENST00000263398 PKD1L1Q8TDX9 2849 aa6.22□□□□□ -1.41
CD44-201ENST00000263398 Q6ZRN7 208 aaPredicted RBP6.22□□□□□ -1.41
CD44-201ENST00000263398 M0R2T5 61 aa6.21□□□□□ -1.42
CD44-201ENST00000263398 ROMO1P60602 79 aa6.2□□□□□ -1.42
CD44-201ENST00000263398 SPATA8Q6RVD6 105 aa6.18□□□□□ -1.42
CD44-201ENST00000263398 TRRAPQ9Y4A5 3859 aa6.17□□□□□ -1.42
CD44-201ENST00000263398 KRTAP13-1Q8IUC0 172 aa6.17□□□□□ -1.42
CD44-201ENST00000263398 RPS29P62273 56 aaKnown RBP6.15□□□□□ -1.43
CD44-201ENST00000263398 H3BS24 57 aa6.13□□□□□ -1.43
CD44-201ENST00000263398 TENM2Q9NT68 2774 aa6.13□□□□□ -1.43
CD44-201ENST00000263398 M0QZ58 72 aa6.13□□□□□ -1.43
CD44-201ENST00000263398 KRTAP13-2Q52LG2 175 aa6.09□□□□□ -1.43
CD44-201ENST00000263398 ZNF469Q96JG9 3925 aaPredicted RBP6.09□□□□□ -1.43
CD44-201ENST00000263398 A6NN06 94 aa6.09□□□□□ -1.44
CD44-201ENST00000263398 ADM2Q7Z4H4 148 aa6.08□□□□□ -1.44
CD44-201ENST00000263398 TGP01266 2768 aa6.07□□□□□ -1.44
CD44-201ENST00000263398 A0A0A0MQY5 61 aa6.06□□□□□ -1.44
CD44-201ENST00000263398 ANK3Q12955 4377 aaKnown RBP6.04□□□□□ -1.44
CD44-201ENST00000263398 A8MU10 97 aa5.99□□□□□ -1.45
CD44-201ENST00000263398 KRTAP25-1Q3LHN0 102 aa5.97□□□□□ -1.45
CD44-201ENST00000263398 A8MUU9 505 aa5.92□□□□□ -1.46
CD44-201ENST00000263398 PLAC4Q8WY50 150 aa5.91□□□□□ -1.46
CD44-201ENST00000263398 C20orf166-AS1Q96NR2 134 aa5.9□□□□□ -1.47
CD44-201ENST00000263398 SRRM2Q9UQ35 2752 aaKnown RBP5.84□□□□□ -1.47
CD44-201ENST00000263398 KRTAP1-4P0C5Y4 121 aa5.83□□□□□ -1.48
CD44-201ENST00000263398 KRTAP21-3Q3LHN1 58 aa5.81□□□□□ -1.48
CD44-201ENST00000263398 AKAP9Q99996 3911 aa5.79□□□□□ -1.48
CD44-201ENST00000263398 KRTAP16-1A8MUX0 517 aa5.77□□□□□ -1.49
CD44-201ENST00000263398 CSMD3Q7Z407 3707 aa5.75□□□□□ -1.49
CD44-201ENST00000263398 FBN3Q75N90 2809 aa5.75□□□□□ -1.49
CD44-201ENST00000263398 NDUFAF8A1L188 74 aa5.74□□□□□ -1.49
CD44-201ENST00000263398 TNP1P09430 55 aa5.7□□□□□ -1.5
CD44-201ENST00000263398 XP32Q5T750 250 aa5.7□□□□□ -1.5
CD44-201ENST00000263398 COL7A1Q02388 2944 aa5.69□□□□□ -1.5
CD44-201ENST00000263398 H0YAA0 97 aa5.68□□□□□ -1.5
CD44-201ENST00000263398 MEGF8Q7Z7M0 2845 aa5.68□□□□□ -1.5
CD44-201ENST00000263398 PP632Q6XCG6 107 aa5.61□□□□□ -1.51
CD44-201ENST00000263398 C10orf95Q9H7T3 257 aa5.6□□□□□ -1.51
CD44-201ENST00000263398 TPRXLQ17RH7 258 aa5.58□□□□□ -1.52
CD44-201ENST00000263398 KRTAP13-3Q3SY46 172 aa5.58□□□□□ -1.52
CD44-201ENST00000263398 HUWE1Q7Z6Z7 4374 aaKnown RBP5.54□□□□□ -1.52
CD44-201ENST00000263398 P0C880 135 aa5.53□□□□□ -1.52
CD44-201ENST00000263398 KRTAP10-8P60410 259 aa5.49□□□□□ -1.53
CD44-201ENST00000263398 A0A1B0GVY2 172 aa5.45□□□□□ -1.54
CD44-201ENST00000263398 DNAH9Q9NYC9 4486 aa5.37□□□□□ -1.55
CD44-201ENST00000263398 KRTAP10-10P60014 251 aa5.36□□□□□ -1.55
CD44-201ENST00000263398 DNHD1Q96M86 4753 aa5.36□□□□□ -1.55
CD44-201ENST00000263398 DNAH10Q8IVF4 4471 aa5.34□□□□□ -1.55
CD44-201ENST00000263398 PLECQ15149 4684 aaKnown RBP5.33□□□□□ -1.56
CD44-201ENST00000263398 ANK2Q01484 3957 aa5.33□□□□□ -1.56
CD44-201ENST00000263398 CMYA5Q8N3K9 4069 aa5.29□□□□□ -1.56
CD44-201ENST00000263398 KRTAP12-2P59991 146 aa5.29□□□□□ -1.56
CD44-201ENST00000263398 KRTAP3-1Q9BYR8 98 aa5.29□□□□□ -1.56
CD44-201ENST00000263398 PRO2289Q9P1D8 64 aa5.28□□□□□ -1.56
CD44-201ENST00000263398 KRTAP12-1P59990 96 aa5.25□□□□□ -1.57
CD44-201ENST00000263398 PRKDCP78527 4128 aaKnown RBP5.23□□□□□ -1.57
CD44-201ENST00000263398 STARD9Q9P2P6 4700 aa5.22□□□□□ -1.57
CD44-201ENST00000263398 DNAH1Q9P2D7 4330 aa5.21□□□□□ -1.58
CD44-201ENST00000263398 KRTAP13-4Q3LI77 160 aa5.21□□□□□ -1.58
CD44-201ENST00000263398 DNAH11Q96DT5 4516 aa5.19□□□□□ -1.58
CD44-201ENST00000263398 LYSTQ99698 3801 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 153 ms