RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 R4GN34 69 aa2.19□□□□□ -2.06
VPS39-212ENST00000570023 UTRNP46939 3433 aa2.19□□□□□ -2.06
VPS39-212ENST00000570023 KRTAP13-1Q8IUC0 172 aa2.18□□□□□ -2.06
VPS39-212ENST00000570023 DNAH14Q0VDD8 3507 aa2.17□□□□□ -2.06
VPS39-212ENST00000570023 CACNA1BQ00975 2339 aa2.17□□□□□ -2.06
VPS39-212ENST00000570023 CUL9Q8IWT3 2517 aa2.17□□□□□ -2.06
VPS39-212ENST00000570023 KRTAP5-9P26371 169 aa2.17□□□□□ -2.06
VPS39-212ENST00000570023 DEFB123Q8N688 67 aa2.17□□□□□ -2.06
VPS39-212ENST00000570023 REV3LO60673 3130 aa2.16□□□□□ -2.06
VPS39-212ENST00000570023 A0A096LNI7 61 aa2.16□□□□□ -2.06
VPS39-212ENST00000570023 UBE2DNLQ8IWF7 75 aa2.16□□□□□ -2.06
VPS39-212ENST00000570023 DEFB124Q8NES8 71 aa2.16□□□□□ -2.06
VPS39-212ENST00000570023 SPACA4Q8TDM5 124 aa2.16□□□□□ -2.06
VPS39-212ENST00000570023 C5orf42Q9H799 3197 aa2.15□□□□□ -2.06
VPS39-212ENST00000570023 ANKRD17O75179 2603 aaKnown RBP2.15□□□□□ -2.06
VPS39-212ENST00000570023 CHD7Q9P2D1 2997 aa2.15□□□□□ -2.07
VPS39-212ENST00000570023 XIRP2A4UGR9 3374 aa2.15□□□□□ -2.07
VPS39-212ENST00000570023 S4R3F8 94 aa2.14□□□□□ -2.07
VPS39-212ENST00000570023 ZZEF1O43149 2961 aa2.13□□□□□ -2.07
VPS39-212ENST00000570023 LCE3AQ5TA76 89 aa2.13□□□□□ -2.07
VPS39-212ENST00000570023 CHD9Q3L8U1 2897 aa2.13□□□□□ -2.07
VPS39-212ENST00000570023 MKI67P46013 3256 aaKnown RBP2.13□□□□□ -2.07
VPS39-212ENST00000570023 RANBP2P49792 3224 aaKnown RBP2.12□□□□□ -2.07
VPS39-212ENST00000570023 TRANK1O15050 2925 aa2.12□□□□□ -2.07
VPS39-212ENST00000570023 SPTBN2O15020 2390 aa2.12□□□□□ -2.07
VPS39-212ENST00000570023 HTN3P15516 51 aa2.12□□□□□ -2.07
VPS39-212ENST00000570023 SPINK6Q6UWN8 80 aa2.12□□□□□ -2.07
VPS39-212ENST00000570023 PP632Q6XCG6 107 aa2.12□□□□□ -2.07
VPS39-212ENST00000570023 MGAQ8IWI9 3026 aa2.12□□□□□ -2.07
VPS39-212ENST00000570023 PKDREJQ9NTG1 2253 aa2.11□□□□□ -2.07
VPS39-212ENST00000570023 APLNQ9ULZ1 77 aa2.11□□□□□ -2.07
VPS39-212ENST00000570023 LAMA3Q16787 3333 aa2.11□□□□□ -2.07
VPS39-212ENST00000570023 CACNA1EQ15878 2313 aa2.11□□□□□ -2.07
VPS39-212ENST00000570023 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.11□□□□□ -2.074e-10■■■■□ 20.9
VPS39-212ENST00000570023 LAMA2P24043 3122 aaKnown RBP2.11□□□□□ -2.07
VPS39-212ENST00000570023 TRIOBPQ9H2D6 2365 aa2.1□□□□□ -2.07
VPS39-212ENST00000570023 FAM186AA6NE01 2351 aa2.09□□□□□ -2.07
VPS39-212ENST00000570023 TPRP12270 2363 aaKnown RBP2.09□□□□□ -2.07
VPS39-212ENST00000570023 CEP250Q9BV73 2442 aa2.09□□□□□ -2.07
VPS39-212ENST00000570023 SPTBN5Q9NRC6 3674 aaKnown RBP2.09□□□□□ -2.07
VPS39-212ENST00000570023 MAP1BP46821 2468 aaKnown RBP2.09□□□□□ -2.07
VPS39-212ENST00000570023 CNOT1A5YKK6 2376 aaKnown RBP2.09□□□□□ -2.08
VPS39-212ENST00000570023 TNRC18O15417 2968 aaPredicted RBP2.09□□□□□ -2.08
VPS39-212ENST00000570023 KRTAP10-8P60410 259 aa2.08□□□□□ -2.08
VPS39-212ENST00000570023 DEFB135Q30KP9 77 aa2.08□□□□□ -2.08
VPS39-212ENST00000570023 CFAP54Q96N23 3096 aa2.08□□□□□ -2.08
VPS39-212ENST00000570023 VCANP13611 3396 aa2.07□□□□□ -2.08
VPS39-212ENST00000570023 DEFB4AO15263 64 aa2.07□□□□□ -2.08
VPS39-212ENST00000570023 LAMA1P25391 3075 aa2.07□□□□□ -2.08
VPS39-212ENST00000570023 COL6A6A6NMZ7 2263 aa2.07□□□□□ -2.08
VPS39-212ENST00000570023 CFAP47Q6ZTR5 3102 aa2.06□□□□□ -2.08
VPS39-212ENST00000570023 A0A0D9SG42 100 aa2.06□□□□□ -2.08
VPS39-212ENST00000570023 PTPRZ1P23471 2315 aaPredicted RBP2.06□□□□□ -2.08
VPS39-212ENST00000570023 SPEGQ15772 3267 aa2.05□□□□□ -2.08
VPS39-212ENST00000570023 WDFY3Q8IZQ1 3526 aa2.05□□□□□ -2.08
VPS39-212ENST00000570023 FLG2Q5D862 2391 aaPredicted RBP2.05□□□□□ -2.08
VPS39-212ENST00000570023 GPR179Q6PRD1 2367 aa2.05□□□□□ -2.08
VPS39-212ENST00000570023 SPRR5A0A1B0GTR4 108 aa2.05□□□□□ -2.08
VPS39-212ENST00000570023 KRTAP12-1P59990 96 aa2.05□□□□□ -2.08
VPS39-212ENST00000570023 PCNX1Q96RV3 2341 aa2.05□□□□□ -2.08
VPS39-212ENST00000570023 M0QZ58 72 aa2.04□□□□□ -2.08
VPS39-212ENST00000570023 ACACAQ13085 2346 aa2.04□□□□□ -2.08
VPS39-212ENST00000570023 KRTAP13-4Q3LI77 160 aa2.04□□□□□ -2.08
VPS39-212ENST00000570023 NBEAQ8NFP9 2946 aa2.04□□□□□ -2.08
VPS39-212ENST00000570023 VPS13AQ96RL7 3174 aa2.04□□□□□ -2.08
VPS39-212ENST00000570023 KRTAP4-3Q9BYR4 195 aa2.04□□□□□ -2.08
VPS39-212ENST00000570023 CDH23Q9H251 3354 aa2.04□□□□□ -2.08
VPS39-212ENST00000570023 AKAP6Q13023 2319 aa2.03□□□□□ -2.08
VPS39-212ENST00000570023 OBSCNQ5VST9 7968 aa2.03□□□□□ -2.08
VPS39-212ENST00000570023 APC2O95996 2303 aa2.03□□□□□ -2.08
VPS39-212ENST00000570023 FRYLO94915 3013 aa2.03□□□□□ -2.08
VPS39-212ENST00000570023 EP300Q09472 2414 aaPredicted RBP2.02□□□□□ -2.09
VPS39-212ENST00000570023 FRYQ5TBA9 3013 aa2.02□□□□□ -2.09
VPS39-212ENST00000570023 IGF2RP11717 2491 aa2.02□□□□□ -2.09
VPS39-212ENST00000570023 TENM2Q9NT68 2774 aa2.02□□□□□ -2.09
VPS39-212ENST00000570023 FREM2Q5SZK8 3169 aa2.02□□□□□ -2.09
VPS39-212ENST00000570023 SPENQ96T58 3664 aaKnown RBP2.01□□□□□ -2.09
VPS39-212ENST00000570023 WDFY4Q6ZS81 3184 aa2□□□□□ -2.09
VPS39-212ENST00000570023 CHD6Q8TD26 2715 aa2□□□□□ -2.09
VPS39-212ENST00000570023 ROS1P08922 2347 aa2□□□□□ -2.09
VPS39-212ENST00000570023 TRIOO75962 3097 aa2□□□□□ -2.09
VPS39-212ENST00000570023 C2CD3Q4AC94 2353 aa2□□□□□ -2.09
VPS39-212ENST00000570023 PRUNE2Q8WUY3 3088 aa1.99□□□□□ -2.09
VPS39-212ENST00000570023 MYO15AQ9UKN7 3530 aa1.99□□□□□ -2.09
VPS39-212ENST00000570023 KRTAP5-5Q701N2 237 aaPredicted RBP1.99□□□□□ -2.09
VPS39-212ENST00000570023 DCHS1Q96JQ0 3298 aa1.99□□□□□ -2.09
VPS39-212ENST00000570023 NOTCH2Q04721 2471 aa1.99□□□□□ -2.09
VPS39-212ENST00000570023 SPTA1P02549 2419 aa1.99□□□□□ -2.09
VPS39-212ENST00000570023 ZDBF2Q9HCK1 2354 aa1.99□□□□□ -2.09
VPS39-212ENST00000570023 DMDP11532 3685 aa1.98□□□□□ -2.09
VPS39-212ENST00000570023 RPS29P62273 56 aaKnown RBP1.97□□□□□ -2.09
VPS39-212ENST00000570023 Q5VSD8 79 aa1.97□□□□□ -2.09
VPS39-212ENST00000570023 KALRNO60229 2985 aa1.97□□□□□ -2.09
VPS39-212ENST00000570023 ZFHX2Q9C0A1 2572 aaPredicted RBP1.96□□□□□ -2.1
VPS39-212ENST00000570023 CACNA1HO95180 2353 aa1.96□□□□□ -2.1
VPS39-212ENST00000570023 SPTBN4Q9H254 2564 aa1.96□□□□□ -2.1
VPS39-212ENST00000570023 DSPP15924 2871 aaKnown RBP1.96□□□□□ -2.1
VPS39-212ENST00000570023 DMXL2Q8TDJ6 3036 aa1.96□□□□□ -2.1
VPS39-212ENST00000570023 EYSQ5T1H1 3165 aa1.96□□□□□ -2.1
VPS39-212ENST00000570023 NCOR1O75376 2440 aa1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms