RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 AEBP2Q6ZN18 517 aaPredicted RBP17.63■□□□□ 0.41
VPS39-212ENST00000570023 CHIC1Q5VXU3 224 aa17.17■□□□□ 0.34
VPS39-212ENST00000570023 PHF23Q9BUL5 403 aaPredicted RBP15.09■□□□□ 0.01
VPS39-212ENST00000570023 SENP3Q9H4L4 574 aaPredicted RBP14.98□□□□□ -0.01
VPS39-212ENST00000570023 FOXD1Q16676 465 aa13.91□□□□□ -0.18
VPS39-212ENST00000570023 PLPPR3Q6T4P5 718 aa13.91□□□□□ -0.18
VPS39-212ENST00000570023 PPP6R1Q9UPN7 881 aa13.33□□□□□ -0.28
VPS39-212ENST00000570023 ADRA2BP18089 450 aa13.29□□□□□ -0.28
VPS39-212ENST00000570023 PIAS4Q8N2W9 510 aaPredicted RBP13.06□□□□□ -0.32
VPS39-212ENST00000570023 MSH5O43196 834 aa12.86□□□□□ -0.35
VPS39-212ENST00000570023 PPP4R3CPQ6ZMV5 832 aa12.23□□□□□ -0.45
VPS39-212ENST00000570023 SCAF1Q9H7N4 1312 aaKnown RBP12.2□□□□□ -0.46
VPS39-212ENST00000570023 MAPK8IP2Q13387 824 aaPredicted RBP12.08□□□□□ -0.48
VPS39-212ENST00000570023 DMRT2Q9Y5R5 561 aa11.96□□□□□ -0.49
VPS39-212ENST00000570023 CNKSR2Q8WXI2 1034 aa11.92□□□□□ -0.5
VPS39-212ENST00000570023 NCBP3Q53F19 620 aaKnown RBP11.9□□□□□ -0.5
VPS39-212ENST00000570023 KCNA4P22459 653 aa11.86□□□□□ -0.51
VPS39-212ENST00000570023 POTEDQ86YR6 584 aa11.8□□□□□ -0.52
VPS39-212ENST00000570023 NPM3O75607 178 aaKnown RBP11.72□□□□□ -0.53
VPS39-212ENST00000570023 RNF216Q9NWF9 866 aaPredicted RBP11.72□□□□□ -0.53
VPS39-212ENST00000570023 HOXD11P31277 338 aaPredicted RBP11.7□□□□□ -0.54
VPS39-212ENST00000570023 DNAJC5BQ9UF47 199 aa11.5□□□□□ -0.57
VPS39-212ENST00000570023 DCAF8L1A6NGE4 600 aa11.35□□□□□ -0.59
VPS39-212ENST00000570023 SLC4A1APQ9BWU0 796 aaKnown RBP11.28□□□□□ -0.6
VPS39-212ENST00000570023 SLC4A2P04920 1241 aa11.1□□□□□ -0.63
VPS39-212ENST00000570023 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.09□□□□□ -0.63
VPS39-212ENST00000570023 RNF39Q9H2S5 420 aa11.02□□□□□ -0.65
VPS39-212ENST00000570023 FOXD4L1Q9NU39 408 aa10.94□□□□□ -0.66
VPS39-212ENST00000570023 U3KPZ7 1027 aaPredicted RBP10.93□□□□□ -0.66
VPS39-212ENST00000570023 ZBTB22O15209 634 aa10.92□□□□□ -0.66
VPS39-212ENST00000570023 C1QBPQ07021 282 aaKnown RBP10.89□□□□□ -0.67
VPS39-212ENST00000570023 EHMT2Q96KQ7 1210 aa10.84□□□□□ -0.67
VPS39-212ENST00000570023 MYCNP04198 464 aaPredicted RBP10.83□□□□□ -0.68
VPS39-212ENST00000570023 CSRNP3Q8WYN3 585 aa10.81□□□□□ -0.68
VPS39-212ENST00000570023 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.78□□□□□ -0.68
VPS39-212ENST00000570023 HNRNPUL2Q1KMD3 747 aaKnown RBP10.78□□□□□ -0.68
VPS39-212ENST00000570023 SAMD1Q6SPF0 538 aaPredicted RBP10.74□□□□□ -0.69
VPS39-212ENST00000570023 CACNB1Q02641 598 aaPredicted RBP10.73□□□□□ -0.69
VPS39-212ENST00000570023 APLP2Q06481 763 aa10.67□□□□□ -0.7
VPS39-212ENST00000570023 SPINK5Q9NQ38 1064 aaPredicted RBP10.62□□□□□ -0.71
VPS39-212ENST00000570023 ATXN8OSP0DMR3 200 aa10.61□□□□□ -0.71
VPS39-212ENST00000570023 CAPN15O75808 1086 aa10.56□□□□□ -0.72
VPS39-212ENST00000570023 ATF5Q9Y2D1 282 aaPredicted RBP10.54□□□□□ -0.72
VPS39-212ENST00000570023 ZNF219Q9P2Y4 722 aaPredicted RBP10.53□□□□□ -0.72
VPS39-212ENST00000570023 TRHP20396 242 aaPredicted RBP10.49□□□□□ -0.73
VPS39-212ENST00000570023 DSG3P32926 999 aa10.45□□□□□ -0.74
VPS39-212ENST00000570023 ABCB7O75027 752 aa10.34□□□□□ -0.75
VPS39-212ENST00000570023 POLA2Q14181 598 aa10.34□□□□□ -0.75
VPS39-212ENST00000570023 ZBTB12Q9Y330 459 aaPredicted RBP10.19□□□□□ -0.78
VPS39-212ENST00000570023 FBLN2P98095 1184 aa10.09□□□□□ -0.79
VPS39-212ENST00000570023 MKRN4PQ13434 485 aaPredicted RBP10.09□□□□□ -0.79
VPS39-212ENST00000570023 OSCARQ8IYS5 282 aa9.97□□□□□ -0.81
VPS39-212ENST00000570023 RBM42Q9BTD8 480 aaKnown RBP9.96□□□□□ -0.82
VPS39-212ENST00000570023 SPDYE2BA6NHP3 402 aa9.9□□□□□ -0.82
VPS39-212ENST00000570023 SPDYE6P0CI01 402 aa9.9□□□□□ -0.82
VPS39-212ENST00000570023 SPDYE2Q495Y8 402 aa9.9□□□□□ -0.82
VPS39-212ENST00000570023 SSUH2Q9Y2M2 353 aa9.84□□□□□ -0.83
VPS39-212ENST00000570023 AKT1S1Q96B36 256 aa9.83□□□□□ -0.84
VPS39-212ENST00000570023 ZNF692Q9BU19 519 aaPredicted RBP9.83□□□□□ -0.84
VPS39-212ENST00000570023 SPDYE4A6NLX3 237 aa9.82□□□□□ -0.84
VPS39-212ENST00000570023 FKBP8Q14318 412 aa9.74□□□□□ -0.85
VPS39-212ENST00000570023 REM2Q8IYK8 340 aaPredicted RBP9.73□□□□□ -0.85
VPS39-212ENST00000570023 PROM2Q8N271 834 aa9.71□□□□□ -0.86
VPS39-212ENST00000570023 PABPN1Q86U42 306 aaKnown RBP eCLIP9.7□□□□□ -0.86
VPS39-212ENST00000570023 SPDYE1Q8NFV5 336 aaPredicted RBP9.62□□□□□ -0.87
VPS39-212ENST00000570023 PITPNM1O00562 1244 aa9.6□□□□□ -0.87
VPS39-212ENST00000570023 CHRDL2Q6WN34 429 aa9.56□□□□□ -0.88
VPS39-212ENST00000570023 STAG3Q9UJ98 1225 aa9.55□□□□□ -0.88
VPS39-212ENST00000570023 CLEC11AQ9Y240 323 aa9.53□□□□□ -0.88
VPS39-212ENST00000570023 FXR2P51116 673 aaKnown RBP eCLIP9.47□□□□□ -0.89
VPS39-212ENST00000570023 PRR29P0C7W0 189 aa9.46□□□□□ -0.9
VPS39-212ENST00000570023 FBXO3Q9UK99 471 aa9.45□□□□□ -0.9
VPS39-212ENST00000570023 PIP4P2Q8N4L2 257 aa9.42□□□□□ -0.9
VPS39-212ENST00000570023 CREBZFQ9NS37 354 aa9.35□□□□□ -0.91
VPS39-212ENST00000570023 PRKAR2AP13861 404 aaKnown RBP9.34□□□□□ -0.91
VPS39-212ENST00000570023 POTEHQ6S545 545 aa9.33□□□□□ -0.92
VPS39-212ENST00000570023 VASPP50552 380 aaPredicted RBP9.31□□□□□ -0.92
VPS39-212ENST00000570023 CHADLQ6NUI6 762 aa9.31□□□□□ -0.92
VPS39-212ENST00000570023 MIER1Q8N108 512 aa9.3□□□□□ -0.92
VPS39-212ENST00000570023 MNX1P50219 401 aaPredicted RBP9.27□□□□□ -0.93
VPS39-212ENST00000570023 PLCD3Q8N3E9 789 aa9.27□□□□□ -0.93
VPS39-212ENST00000570023 FARP1Q9Y4F1 1045 aaPredicted RBP9.26□□□□□ -0.93
VPS39-212ENST00000570023 PLEKHG5O94827 1062 aa9.25□□□□□ -0.93
VPS39-212ENST00000570023 ZBTB47Q9UFB7 747 aaPredicted RBP9.21□□□□□ -0.94
VPS39-212ENST00000570023 NPM1P06748 294 aaKnown RBP eCLIP9.19□□□□□ -0.94
VPS39-212ENST00000570023 IFNLR1Q8IU57 520 aaPredicted RBP9.19□□□□□ -0.94
VPS39-212ENST00000570023 C19orf67A6NJJ6 358 aa9.14□□□□□ -0.95
VPS39-212ENST00000570023 KLHL34Q8N239 644 aa9.13□□□□□ -0.95
VPS39-212ENST00000570023 HAX1O00165 279 aa9.12□□□□□ -0.95
VPS39-212ENST00000570023 NUBP1P53384 320 aa9.11□□□□□ -0.95
VPS39-212ENST00000570023 CD44P16070 742 aaKnown RBP9.08□□□□□ -0.96
VPS39-212ENST00000570023 SPOCK2Q92563 424 aa9.08□□□□□ -0.96
VPS39-212ENST00000570023 RASEFQ8IZ41 740 aa9.07□□□□□ -0.96
VPS39-212ENST00000570023 EVX2Q03828 476 aa9.06□□□□□ -0.96
VPS39-212ENST00000570023 PAK3O75914 559 aaPredicted RBP9.03□□□□□ -0.96
VPS39-212ENST00000570023 FAM212AQ96EL1 285 aa9□□□□□ -0.97
VPS39-212ENST00000570023 ZRANB1Q9UGI0 708 aa9□□□□□ -0.97
VPS39-212ENST00000570023 ZNF579Q8NAF0 562 aaKnown RBP8.99□□□□□ -0.97
VPS39-212ENST00000570023 TSPYL2Q9H2G4 693 aaPredicted RBP8.99□□□□□ -0.97
VPS39-212ENST00000570023 CCDC61Q9Y6R9 512 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms