RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 CEP350Q5VT06 3117 aa7.43□□□□□ -1.22
COL4A6-209ENST00000545689 KRTAP10-1P60331 282 aa7.4□□□□□ -1.22
COL4A6-209ENST00000545689 ASB16-AS1Q495Z4 193 aa7.39□□□□□ -1.23
COL4A6-209ENST00000545689 HTTP42858 3142 aa7.39□□□□□ -1.23
COL4A6-209ENST00000545689 LUZP6Q538Z0 58 aa7.38□□□□□ -1.23
COL4A6-209ENST00000545689 LCE6AA0A183 80 aa7.37□□□□□ -1.23
COL4A6-209ENST00000545689 CAMK2N1Q7Z7J9 78 aa7.37□□□□□ -1.23
COL4A6-209ENST00000545689 C5orf42Q9H799 3197 aa7.37□□□□□ -1.23
COL4A6-209ENST00000545689 KRTAP10-2P60368 255 aa7.36□□□□□ -1.23
COL4A6-209ENST00000545689 ATRQ13535 2644 aa7.36□□□□□ -1.23
COL4A6-209ENST00000545689 MGAM2Q2M2H8 2515 aa7.35□□□□□ -1.23
COL4A6-209ENST00000545689 PANO1I0J062 215 aa7.35□□□□□ -1.23
COL4A6-209ENST00000545689 HELZ2Q9BYK8 2649 aaKnown RBP7.34□□□□□ -1.23
COL4A6-209ENST00000545689 RPS29P62273 56 aaKnown RBP7.34□□□□□ -1.24
COL4A6-209ENST00000545689 SEC61BP60468 96 aaKnown RBP7.33□□□□□ -1.24
COL4A6-209ENST00000545689 H1FX-AS1Q4G0G2 97 aa7.31□□□□□ -1.24
COL4A6-209ENST00000545689 Q5VSD8 79 aa7.31□□□□□ -1.24
COL4A6-209ENST00000545689 FLNBO75369 2602 aaKnown RBP7.31□□□□□ -1.24
COL4A6-209ENST00000545689 PRAC1Q96KF2 57 aa7.3□□□□□ -1.24
COL4A6-209ENST00000545689 USP24Q9UPU5 2620 aa7.3□□□□□ -1.24
COL4A6-209ENST00000545689 RPL37P61927 97 aaKnown RBP7.3□□□□□ -1.24
COL4A6-209ENST00000545689 Q6ZRN7 208 aaPredicted RBP7.28□□□□□ -1.24
COL4A6-209ENST00000545689 ZNF292O60281 2723 aa7.28□□□□□ -1.24
COL4A6-209ENST00000545689 UTRNP46939 3433 aa7.27□□□□□ -1.25
COL4A6-209ENST00000545689 ROMO1P60602 79 aa7.26□□□□□ -1.25
COL4A6-209ENST00000545689 KRTAP7-1Q8IUC3 87 aa7.26□□□□□ -1.25
COL4A6-209ENST00000545689 R4GN34 69 aa7.25□□□□□ -1.25
COL4A6-209ENST00000545689 A0A087X002 238 aa7.24□□□□□ -1.25
COL4A6-209ENST00000545689 CFAP46Q8IYW2 2715 aa7.24□□□□□ -1.25
COL4A6-209ENST00000545689 MAST4O15021 2626 aa7.24□□□□□ -1.25
COL4A6-209ENST00000545689 KRTAP13-1Q8IUC0 172 aa7.24□□□□□ -1.25
COL4A6-209ENST00000545689 KRTAP11-1Q8IUC1 163 aa7.22□□□□□ -1.25
COL4A6-209ENST00000545689 SPATA8Q6RVD6 105 aa7.22□□□□□ -1.25
COL4A6-209ENST00000545689 M0R2T5 61 aa7.2□□□□□ -1.26
COL4A6-209ENST00000545689 NOTCH2NLQ7Z3S9 236 aa7.19□□□□□ -1.26
COL4A6-209ENST00000545689 AKAP13Q12802 2813 aa7.13□□□□□ -1.27
COL4A6-209ENST00000545689 M0QZ58 72 aa7.12□□□□□ -1.27
COL4A6-209ENST00000545689 MGAQ8IWI9 3026 aa7.12□□□□□ -1.27
COL4A6-209ENST00000545689 ADM2Q7Z4H4 148 aa7.1□□□□□ -1.27
COL4A6-209ENST00000545689 KRTAP13-2Q52LG2 175 aa7.09□□□□□ -1.27
COL4A6-209ENST00000545689 A6NN06 94 aa7.09□□□□□ -1.27
COL4A6-209ENST00000545689 GCN1Q92616 2671 aaKnown RBP7.06□□□□□ -1.28
COL4A6-209ENST00000545689 PCNTO95613 3336 aa7.06□□□□□ -1.28
COL4A6-209ENST00000545689 A0A0A0MQY5 61 aa7.05□□□□□ -1.28
COL4A6-209ENST00000545689 CHD6Q8TD26 2715 aa7.05□□□□□ -1.28
COL4A6-209ENST00000545689 RANBP2P49792 3224 aaKnown RBP7.04□□□□□ -1.28
COL4A6-209ENST00000545689 CENPEQ02224 2701 aa7.04□□□□□ -1.28
COL4A6-209ENST00000545689 UNC79Q9P2D8 2635 aa7.04□□□□□ -1.28
COL4A6-209ENST00000545689 IGSF10Q6WRI0 2623 aa7.03□□□□□ -1.28
COL4A6-209ENST00000545689 H3BS24 57 aa7.03□□□□□ -1.28
COL4A6-209ENST00000545689 TEP1Q99973 2627 aaKnown RBP6.99□□□□□ -1.29
COL4A6-209ENST00000545689 MKI67P46013 3256 aaKnown RBP6.99□□□□□ -1.29
COL4A6-209ENST00000545689 A0A0C4DFX4 3053 aa6.98□□□□□ -1.29
COL4A6-209ENST00000545689 KRTAP21-3Q3LHN1 58 aa6.98□□□□□ -1.29
COL4A6-209ENST00000545689 CFAP54Q96N23 3096 aa6.97□□□□□ -1.29
COL4A6-209ENST00000545689 SETXQ7Z333 2677 aaKnown RBP6.97□□□□□ -1.29
COL4A6-209ENST00000545689 KRTAP25-1Q3LHN0 102 aa6.97□□□□□ -1.29
COL4A6-209ENST00000545689 TEX15Q9BXT5 2789 aa6.97□□□□□ -1.29
COL4A6-209ENST00000545689 PLAC4Q8WY50 150 aa6.96□□□□□ -1.29
COL4A6-209ENST00000545689 NBEAL1Q6ZS30 2694 aa6.95□□□□□ -1.3
COL4A6-209ENST00000545689 KMT2BQ9UMN6 2715 aaPredicted RBP6.95□□□□□ -1.3
COL4A6-209ENST00000545689 A8MUU9 505 aa6.95□□□□□ -1.3
COL4A6-209ENST00000545689 C20orf166-AS1Q96NR2 134 aa6.93□□□□□ -1.3
COL4A6-209ENST00000545689 LAMA3Q16787 3333 aa6.9□□□□□ -1.3
COL4A6-209ENST00000545689 COL6A5A8TX70 2615 aa6.9□□□□□ -1.31
COL4A6-209ENST00000545689 A8MU10 97 aa6.89□□□□□ -1.31
COL4A6-209ENST00000545689 STAB1Q9NY15 2570 aa6.88□□□□□ -1.31
COL4A6-209ENST00000545689 NBEAL2Q6ZNJ1 2754 aa6.86□□□□□ -1.31
COL4A6-209ENST00000545689 DSPP15924 2871 aaKnown RBP6.86□□□□□ -1.31
COL4A6-209ENST00000545689 WDFY4Q6ZS81 3184 aa6.83□□□□□ -1.32
COL4A6-209ENST00000545689 NSD1Q96L73 2696 aaPredicted RBP6.83□□□□□ -1.32
COL4A6-209ENST00000545689 NOTCH1P46531 2555 aa6.83□□□□□ -1.32
COL4A6-209ENST00000545689 ITPR2Q14571 2701 aa6.82□□□□□ -1.32
COL4A6-209ENST00000545689 TRIOO75962 3097 aa6.81□□□□□ -1.32
COL4A6-209ENST00000545689 KRTAP1-4P0C5Y4 121 aa6.8□□□□□ -1.32
COL4A6-209ENST00000545689 FRYQ5TBA9 3013 aa6.79□□□□□ -1.32
COL4A6-209ENST00000545689 LAMA2P24043 3122 aaKnown RBP6.78□□□□□ -1.32
COL4A6-209ENST00000545689 BRCA2P51587 3418 aa6.75□□□□□ -1.33
COL4A6-209ENST00000545689 UBR5O95071 2799 aaPredicted RBP6.75□□□□□ -1.33
COL4A6-209ENST00000545689 DMBT1Q9UGM3 2413 aaPredicted RBP6.74□□□□□ -1.33
COL4A6-209ENST00000545689 ITPR1Q14643 2758 aa6.72□□□□□ -1.33
COL4A6-209ENST00000545689 PRUNE2Q8WUY3 3088 aa6.72□□□□□ -1.33
COL4A6-209ENST00000545689 VPS13AQ96RL7 3174 aa6.7□□□□□ -1.34
COL4A6-209ENST00000545689 KRTAP16-1A8MUX0 517 aa6.69□□□□□ -1.34
COL4A6-209ENST00000545689 UNC80Q8N2C7 3258 aa6.68□□□□□ -1.34
COL4A6-209ENST00000545689 MAP1AP78559 2803 aaPredicted RBP6.68□□□□□ -1.34
COL4A6-209ENST00000545689 BAHCC1Q9P281 2608 aa6.68□□□□□ -1.34
COL4A6-209ENST00000545689 XP32Q5T750 250 aa6.67□□□□□ -1.34
COL4A6-209ENST00000545689 TNP1P09430 55 aa6.66□□□□□ -1.34
COL4A6-209ENST00000545689 CDH23Q9H251 3354 aa6.65□□□□□ -1.35
COL4A6-209ENST00000545689 UTP20O75691 2785 aaKnown RBP6.64□□□□□ -1.35
COL4A6-209ENST00000545689 FLNCQ14315 2725 aa6.64□□□□□ -1.35
COL4A6-209ENST00000545689 PP632Q6XCG6 107 aa6.63□□□□□ -1.35
COL4A6-209ENST00000545689 KALRNO60229 2985 aa6.62□□□□□ -1.35
COL4A6-209ENST00000545689 STAB2Q8WWQ8 2551 aa6.62□□□□□ -1.35
COL4A6-209ENST00000545689 TPRXLQ17RH7 258 aa6.59□□□□□ -1.35
COL4A6-209ENST00000545689 LRBAP50851 2863 aa6.59□□□□□ -1.36
COL4A6-209ENST00000545689 HIVEP1P15822 2718 aa6.58□□□□□ -1.36
COL4A6-209ENST00000545689 H0YAA0 97 aa6.58□□□□□ -1.36
COL4A6-209ENST00000545689 ATMQ13315 3056 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms