RNA–Protein interactions for RNA: ENST00000399002.6

SPTLC3-201, Transcript of serine palmitoyltransferase long chain base subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC3, Length 6,169 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC3-201ENST00000399002 ZNF462Q96JM2 2506 aa4.74□□□□□ -1.65
SPTLC3-201ENST00000399002 PIEZO1Q92508 2521 aa4.72□□□□□ -1.65
SPTLC3-201ENST00000399002 KRTAP7-1Q8IUC3 87 aa4.72□□□□□ -1.65
SPTLC3-201ENST00000399002 DNAH12Q6ZR08 3092 aa4.71□□□□□ -1.66
SPTLC3-201ENST00000399002 ABCA12Q86UK0 2595 aa4.71□□□□□ -1.66
SPTLC3-201ENST00000399002 A8MUU9 505 aa4.7□□□□□ -1.66
SPTLC3-201ENST00000399002 FN1P02751 2386 aaKnown RBP4.7□□□□□ -1.66
SPTLC3-201ENST00000399002 KRTAP11-1Q8IUC1 163 aa4.7□□□□□ -1.66
SPTLC3-201ENST00000399002 MKI67P46013 3256 aaKnown RBP4.68□□□□□ -1.66
SPTLC3-201ENST00000399002 KRTAP16-1A8MUX0 517 aa4.68□□□□□ -1.66
SPTLC3-201ENST00000399002 KRTAP13-2Q52LG2 175 aa4.68□□□□□ -1.66
SPTLC3-201ENST00000399002 MYO9AB2RTY4 2548 aa4.68□□□□□ -1.66
SPTLC3-201ENST00000399002 KRTAP21-3Q3LHN1 58 aa4.67□□□□□ -1.66
SPTLC3-201ENST00000399002 C20orf166-AS1Q96NR2 134 aa4.66□□□□□ -1.66
SPTLC3-201ENST00000399002 TLN2Q9Y4G6 2542 aa4.66□□□□□ -1.66
SPTLC3-201ENST00000399002 ANKRD11Q6UB99 2663 aaPredicted RBP4.65□□□□□ -1.67
SPTLC3-201ENST00000399002 USP9XQ93008 2570 aaPredicted RBP4.63□□□□□ -1.67
SPTLC3-201ENST00000399002 PP632Q6XCG6 107 aa4.62□□□□□ -1.67
SPTLC3-201ENST00000399002 A8MU10 97 aa4.61□□□□□ -1.67
SPTLC3-201ENST00000399002 TNP1P09430 55 aa4.6□□□□□ -1.67
SPTLC3-201ENST00000399002 LAMA2P24043 3122 aaKnown RBP4.59□□□□□ -1.67
SPTLC3-201ENST00000399002 PKD1L2Q7Z442 2459 aa4.58□□□□□ -1.68
SPTLC3-201ENST00000399002 TNRC18O15417 2968 aaPredicted RBP4.56□□□□□ -1.68
SPTLC3-201ENST00000399002 F8P00451 2351 aa4.56□□□□□ -1.68
SPTLC3-201ENST00000399002 CHD8Q9HCK8 2581 aa4.55□□□□□ -1.68
SPTLC3-201ENST00000399002 JMJD1CQ15652 2540 aa4.55□□□□□ -1.68
SPTLC3-201ENST00000399002 MYO18BQ8IUG5 2567 aa4.54□□□□□ -1.68
SPTLC3-201ENST00000399002 RANBP2P49792 3224 aaKnown RBP4.53□□□□□ -1.68
SPTLC3-201ENST00000399002 LAMA3Q16787 3333 aa4.52□□□□□ -1.69
SPTLC3-201ENST00000399002 CDH23Q9H251 3354 aa4.51□□□□□ -1.69
SPTLC3-201ENST00000399002 CHD7Q9P2D1 2997 aa4.51□□□□□ -1.69
SPTLC3-201ENST00000399002 USP9YO00507 2555 aaPredicted RBP4.5□□□□□ -1.69
SPTLC3-201ENST00000399002 CHD9Q3L8U1 2897 aa4.5□□□□□ -1.69
SPTLC3-201ENST00000399002 CEP295Q9C0D2 2601 aa4.5□□□□□ -1.69
SPTLC3-201ENST00000399002 REV3LO60673 3130 aa4.5□□□□□ -1.69
SPTLC3-201ENST00000399002 FASNP49327 2511 aaKnown RBP4.49□□□□□ -1.69
SPTLC3-201ENST00000399002 TRANK1O15050 2925 aa4.48□□□□□ -1.69
SPTLC3-201ENST00000399002 NDUFAF8A1L188 74 aa4.47□□□□□ -1.69
SPTLC3-201ENST00000399002 ZFYVE26Q68DK2 2539 aa4.47□□□□□ -1.69
SPTLC3-201ENST00000399002 SZT2Q5T011 3432 aa4.47□□□□□ -1.69
SPTLC3-201ENST00000399002 KRTAP1-4P0C5Y4 121 aa4.47□□□□□ -1.69
SPTLC3-201ENST00000399002 WDR87Q6ZQQ6 2873 aa4.47□□□□□ -1.69
SPTLC3-201ENST00000399002 EYSQ5T1H1 3165 aa4.46□□□□□ -1.69
SPTLC3-201ENST00000399002 XP32Q5T750 250 aa4.46□□□□□ -1.7
SPTLC3-201ENST00000399002 BPTFQ12830 3046 aa4.46□□□□□ -1.7
SPTLC3-201ENST00000399002 TPRXLQ17RH7 258 aa4.45□□□□□ -1.7
SPTLC3-201ENST00000399002 POLQO75417 2590 aa4.45□□□□□ -1.7
SPTLC3-201ENST00000399002 C10orf95Q9H7T3 257 aa4.44□□□□□ -1.7
SPTLC3-201ENST00000399002 XIRP2A4UGR9 3374 aa4.44□□□□□ -1.7
SPTLC3-201ENST00000399002 SPTBN5Q9NRC6 3674 aaKnown RBP4.43□□□□□ -1.7
SPTLC3-201ENST00000399002 MTORP42345 2549 aa4.42□□□□□ -1.7
SPTLC3-201ENST00000399002 ACANP16112 2415 aa4.42□□□□□ -1.7
SPTLC3-201ENST00000399002 C5orf42Q9H799 3197 aa4.41□□□□□ -1.7
SPTLC3-201ENST00000399002 PRUNE2Q8WUY3 3088 aa4.4□□□□□ -1.7
SPTLC3-201ENST00000399002 H0YAA0 97 aa4.4□□□□□ -1.7
SPTLC3-201ENST00000399002 UNC80Q8N2C7 3258 aa4.39□□□□□ -1.71
SPTLC3-201ENST00000399002 COL6A3P12111 3177 aa4.38□□□□□ -1.71
SPTLC3-201ENST00000399002 P0C880 135 aa4.37□□□□□ -1.71
SPTLC3-201ENST00000399002 FLNAP21333 2647 aaKnown RBP4.36□□□□□ -1.71
SPTLC3-201ENST00000399002 SPTBN4Q9H254 2564 aa4.35□□□□□ -1.71
SPTLC3-201ENST00000399002 PRO2289Q9P1D8 64 aa4.35□□□□□ -1.71
SPTLC3-201ENST00000399002 KRTAP13-3Q3SY46 172 aa4.32□□□□□ -1.72
SPTLC3-201ENST00000399002 MUC3AQ02505 3323 aa4.32□□□□□ -1.72
SPTLC3-201ENST00000399002 VCANP13611 3396 aa4.32□□□□□ -1.72
SPTLC3-201ENST00000399002 SETD2Q9BYW2 2564 aaPredicted RBP4.32□□□□□ -1.72
SPTLC3-201ENST00000399002 TRIOO75962 3097 aa4.32□□□□□ -1.72
SPTLC3-201ENST00000399002 KRTAP10-8P60410 259 aa4.31□□□□□ -1.72
SPTLC3-201ENST00000399002 ITPR3Q14573 2671 aa4.29□□□□□ -1.72
SPTLC3-201ENST00000399002 KMT2BQ9UMN6 2715 aaPredicted RBP4.28□□□□□ -1.72
SPTLC3-201ENST00000399002 A0A0C4DFX4 3053 aa4.25□□□□□ -1.73
SPTLC3-201ENST00000399002 USP34Q70CQ2 3546 aa4.24□□□□□ -1.73
SPTLC3-201ENST00000399002 A0A1B0GVY2 172 aa4.23□□□□□ -1.73
SPTLC3-201ENST00000399002 KRTAP10-10P60014 251 aa4.21□□□□□ -1.74
SPTLC3-201ENST00000399002 WDFY4Q6ZS81 3184 aa4.21□□□□□ -1.74
SPTLC3-201ENST00000399002 DMDP11532 3685 aa4.2□□□□□ -1.74
SPTLC3-201ENST00000399002 HECTD1Q9ULT8 2610 aa4.2□□□□□ -1.74
SPTLC3-201ENST00000399002 DNAH14Q0VDD8 3507 aa4.19□□□□□ -1.74
SPTLC3-201ENST00000399002 VPS13AQ96RL7 3174 aa4.19□□□□□ -1.74
SPTLC3-201ENST00000399002 MYO15AQ9UKN7 3530 aa4.19□□□□□ -1.74
SPTLC3-201ENST00000399002 EPG5Q9HCE0 2579 aa4.18□□□□□ -1.74
SPTLC3-201ENST00000399002 LAMA1P25391 3075 aa4.18□□□□□ -1.74
SPTLC3-201ENST00000399002 KRTAP13-4Q3LI77 160 aa4.17□□□□□ -1.74
SPTLC3-201ENST00000399002 FRYLO94915 3013 aa4.17□□□□□ -1.74
SPTLC3-201ENST00000399002 ATRQ13535 2644 aa4.15□□□□□ -1.74
SPTLC3-201ENST00000399002 HELZ2Q9BYK8 2649 aaKnown RBP4.14□□□□□ -1.75
SPTLC3-201ENST00000399002 KRTAP12-2P59991 146 aa4.12□□□□□ -1.75
SPTLC3-201ENST00000399002 SPEGQ15772 3267 aa4.12□□□□□ -1.75
SPTLC3-201ENST00000399002 MGAM2Q2M2H8 2515 aa4.07□□□□□ -1.76
SPTLC3-201ENST00000399002 KRTAP12-1P59990 96 aa4.07□□□□□ -1.76
SPTLC3-201ENST00000399002 WDFY3Q8IZQ1 3526 aa4.07□□□□□ -1.76
SPTLC3-201ENST00000399002 DMXL1Q9Y485 3027 aa4.06□□□□□ -1.76
SPTLC3-201ENST00000399002 USP24Q9UPU5 2620 aa4.05□□□□□ -1.76
SPTLC3-201ENST00000399002 MAST4O15021 2626 aa4.04□□□□□ -1.76
SPTLC3-201ENST00000399002 CFAP54Q96N23 3096 aa4.04□□□□□ -1.76
SPTLC3-201ENST00000399002 DMBT1Q9UGM3 2413 aaPredicted RBP4.04□□□□□ -1.76
SPTLC3-201ENST00000399002 DCHS1Q96JQ0 3298 aa4.04□□□□□ -1.76
SPTLC3-201ENST00000399002 CENPEQ02224 2701 aa4.03□□□□□ -1.76
SPTLC3-201ENST00000399002 TEP1Q99973 2627 aaKnown RBP4.03□□□□□ -1.76
SPTLC3-201ENST00000399002 ZNF292O60281 2723 aa4.03□□□□□ -1.76
SPTLC3-201ENST00000399002 CFAP46Q8IYW2 2715 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms