RNA–Protein interactions for RNA: ENST00000355497.9

LMX1B-201, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-201ENST00000355497 ASB16-AS1Q495Z4 193 aa8.85□□□□□ -0.99
LMX1B-201ENST00000355497 SPATA8Q6RVD6 105 aa8.85□□□□□ -0.99
LMX1B-201ENST00000355497 OXTP01178 125 aa8.85□□□□□ -0.99
LMX1B-201ENST00000355497 DNAH12Q6ZR08 3092 aa8.83□□□□□ -1
LMX1B-201ENST00000355497 Q6ZR54 194 aa8.83□□□□□ -1
LMX1B-201ENST00000355497 KRTAP1-5Q9BYS1 174 aa8.81□□□□□ -1
LMX1B-201ENST00000355497 KRTAP10-1P60331 282 aa8.78□□□□□ -1
LMX1B-201ENST00000355497 FASNP49327 2511 aaKnown RBP8.78□□□□□ -1
LMX1B-201ENST00000355497 C20orf166-AS1Q96NR2 134 aa8.75□□□□□ -1.01
LMX1B-201ENST00000355497 KRTAP10-2P60368 255 aa8.72□□□□□ -1.01
LMX1B-201ENST00000355497 KRTAP29-1A8MX34 341 aaPredicted RBP8.71□□□□□ -1.01
LMX1B-201ENST00000355497 PANO1I0J062 215 aa8.7□□□□□ -1.02
LMX1B-201ENST00000355497 UTRNP46939 3433 aa8.69□□□□□ -1.02
LMX1B-201ENST00000355497 KRTAP25-1Q3LHN0 102 aa8.68□□□□□ -1.02
LMX1B-201ENST00000355497 LCE6AA0A183 80 aa8.68□□□□□ -1.02
LMX1B-201ENST00000355497 KRTAP4-16G5E9R7 235 aaPredicted RBP8.66□□□□□ -1.02
LMX1B-201ENST00000355497 CEP350Q5VT06 3117 aa8.6□□□□□ -1.03
LMX1B-201ENST00000355497 A0A087X002 238 aa8.59□□□□□ -1.03
LMX1B-201ENST00000355497 CHD7Q9P2D1 2997 aa8.58□□□□□ -1.04
LMX1B-201ENST00000355497 A6NN06 94 aa8.56□□□□□ -1.04
LMX1B-201ENST00000355497 NOTCH2NLQ7Z3S9 236 aa8.56□□□□□ -1.04
LMX1B-201ENST00000355497 MGAM2Q2M2H8 2515 aa8.56□□□□□ -1.04
LMX1B-201ENST00000355497 A8MU10 97 aa8.55□□□□□ -1.04
LMX1B-201ENST00000355497 NDUFAF8A1L188 74 aa8.55□□□□□ -1.04
LMX1B-201ENST00000355497 USP24Q9UPU5 2620 aa8.54□□□□□ -1.04
LMX1B-201ENST00000355497 CHD9Q3L8U1 2897 aa8.54□□□□□ -1.04
LMX1B-201ENST00000355497 BPTFQ12830 3046 aa8.54□□□□□ -1.04
LMX1B-201ENST00000355497 HTTP42858 3142 aa8.52□□□□□ -1.04
LMX1B-201ENST00000355497 A8MUU9 505 aa8.52□□□□□ -1.04
LMX1B-201ENST00000355497 RPS29P62273 56 aaKnown RBP8.5□□□□□ -1.05
LMX1B-201ENST00000355497 HECTD1Q9ULT8 2610 aa8.46□□□□□ -1.05
LMX1B-201ENST00000355497 C10orf95Q9H7T3 257 aa8.44□□□□□ -1.06
LMX1B-201ENST00000355497 TRANK1O15050 2925 aa8.41□□□□□ -1.06
LMX1B-201ENST00000355497 KRTAP11-1Q8IUC1 163 aa8.39□□□□□ -1.07
LMX1B-201ENST00000355497 C5orf42Q9H799 3197 aa8.38□□□□□ -1.07
LMX1B-201ENST00000355497 EPG5Q9HCE0 2579 aa8.37□□□□□ -1.07
LMX1B-201ENST00000355497 FLNAP21333 2647 aaKnown RBP8.37□□□□□ -1.07
LMX1B-201ENST00000355497 TNP1P09430 55 aa8.37□□□□□ -1.07
LMX1B-201ENST00000355497 PCNTO95613 3336 aa8.31□□□□□ -1.08
LMX1B-201ENST00000355497 PRRC2CQ9Y520 2896 aaKnown RBP8.3□□□□□ -1.08
LMX1B-201ENST00000355497 KRTAP13-2Q52LG2 175 aa8.3□□□□□ -1.08
LMX1B-201ENST00000355497 Q6ZRN7 208 aaPredicted RBP8.29□□□□□ -1.08
LMX1B-201ENST00000355497 ITPR3Q14573 2671 aa8.29□□□□□ -1.08
LMX1B-201ENST00000355497 FLG2Q5D862 2391 aaPredicted RBP8.28□□□□□ -1.08
LMX1B-201ENST00000355497 KRTAP7-1Q8IUC3 87 aa8.28□□□□□ -1.08
LMX1B-201ENST00000355497 ATRQ13535 2644 aa8.26□□□□□ -1.09
LMX1B-201ENST00000355497 FLNBO75369 2602 aaKnown RBP8.26□□□□□ -1.09
LMX1B-201ENST00000355497 KRTAP13-1Q8IUC0 172 aa8.24□□□□□ -1.09
LMX1B-201ENST00000355497 MAST4O15021 2626 aa8.19□□□□□ -1.1
LMX1B-201ENST00000355497 DMBT1Q9UGM3 2413 aaPredicted RBP8.18□□□□□ -1.1
LMX1B-201ENST00000355497 RANBP2P49792 3224 aaKnown RBP8.17□□□□□ -1.1
LMX1B-201ENST00000355497 PP632Q6XCG6 107 aa8.12□□□□□ -1.11
LMX1B-201ENST00000355497 TNRC18O15417 2968 aaPredicted RBP8.11□□□□□ -1.11
LMX1B-201ENST00000355497 NBEAL1Q6ZS30 2694 aa8.11□□□□□ -1.11
LMX1B-201ENST00000355497 HELZ2Q9BYK8 2649 aaKnown RBP8.09□□□□□ -1.11
LMX1B-201ENST00000355497 STAB1Q9NY15 2570 aa8.09□□□□□ -1.11
LMX1B-201ENST00000355497 ZNF292O60281 2723 aa8.08□□□□□ -1.12
LMX1B-201ENST00000355497 MKI67P46013 3256 aaKnown RBP8.08□□□□□ -1.12
LMX1B-201ENST00000355497 LAMA3Q16787 3333 aa8.04□□□□□ -1.12
LMX1B-201ENST00000355497 KRTAP10-8P60410 259 aa8.03□□□□□ -1.12
LMX1B-201ENST00000355497 BRCA2P51587 3418 aa8.01□□□□□ -1.13
LMX1B-201ENST00000355497 CFAP46Q8IYW2 2715 aa7.97□□□□□ -1.13
LMX1B-201ENST00000355497 P0C880 135 aa7.93□□□□□ -1.14
LMX1B-201ENST00000355497 MGAQ8IWI9 3026 aa7.91□□□□□ -1.14
LMX1B-201ENST00000355497 CHD6Q8TD26 2715 aa7.91□□□□□ -1.14
LMX1B-201ENST00000355497 AKAP13Q12802 2813 aa7.91□□□□□ -1.14
LMX1B-201ENST00000355497 A0A1B0GVY2 172 aa7.9□□□□□ -1.14
LMX1B-201ENST00000355497 XP32Q5T750 250 aa7.9□□□□□ -1.14
LMX1B-201ENST00000355497 CENPEQ02224 2701 aa7.89□□□□□ -1.15
LMX1B-201ENST00000355497 H0YAA0 97 aa7.89□□□□□ -1.15
LMX1B-201ENST00000355497 GCN1Q92616 2671 aaKnown RBP7.85□□□□□ -1.15
LMX1B-201ENST00000355497 UNC79Q9P2D8 2635 aa7.85□□□□□ -1.15
LMX1B-201ENST00000355497 TEX15Q9BXT5 2789 aa7.85□□□□□ -1.15
LMX1B-201ENST00000355497 STAB2Q8WWQ8 2551 aa7.83□□□□□ -1.16
LMX1B-201ENST00000355497 A0A0C4DFX4 3053 aa7.83□□□□□ -1.16
LMX1B-201ENST00000355497 PRUNE2Q8WUY3 3088 aa7.81□□□□□ -1.16
LMX1B-201ENST00000355497 UNC80Q8N2C7 3258 aa7.81□□□□□ -1.16
LMX1B-201ENST00000355497 KRTAP1-4P0C5Y4 121 aa7.8□□□□□ -1.16
LMX1B-201ENST00000355497 CDH23Q9H251 3354 aa7.8□□□□□ -1.16
LMX1B-201ENST00000355497 LAMA2P24043 3122 aaKnown RBP7.79□□□□□ -1.16
LMX1B-201ENST00000355497 CFAP54Q96N23 3096 aa7.78□□□□□ -1.16
LMX1B-201ENST00000355497 PRO2289Q9P1D8 64 aa7.76□□□□□ -1.17
LMX1B-201ENST00000355497 TEP1Q99973 2627 aaKnown RBP7.74□□□□□ -1.17
LMX1B-201ENST00000355497 WDFY4Q6ZS81 3184 aa7.74□□□□□ -1.17
LMX1B-201ENST00000355497 KRTAP10-10P60014 251 aa7.74□□□□□ -1.17
LMX1B-201ENST00000355497 IGSF10Q6WRI0 2623 aa7.73□□□□□ -1.17
LMX1B-201ENST00000355497 TRIOO75962 3097 aa7.72□□□□□ -1.17
LMX1B-201ENST00000355497 TPRXLQ17RH7 258 aa7.72□□□□□ -1.17
LMX1B-201ENST00000355497 NOTCH1P46531 2555 aa7.71□□□□□ -1.18
LMX1B-201ENST00000355497 KRTAP21-3Q3LHN1 58 aa7.69□□□□□ -1.18
LMX1B-201ENST00000355497 DSPP15924 2871 aaKnown RBP7.68□□□□□ -1.18
LMX1B-201ENST00000355497 SZT2Q5T011 3432 aa7.66□□□□□ -1.18
LMX1B-201ENST00000355497 NBEAL2Q6ZNJ1 2754 aa7.66□□□□□ -1.18
LMX1B-201ENST00000355497 COL6A5A8TX70 2615 aa7.66□□□□□ -1.18
LMX1B-201ENST00000355497 VPS13AQ96RL7 3174 aa7.62□□□□□ -1.19
LMX1B-201ENST00000355497 XIRP2A4UGR9 3374 aa7.62□□□□□ -1.19
LMX1B-201ENST00000355497 LAMA1P25391 3075 aa7.58□□□□□ -1.2
LMX1B-201ENST00000355497 SETXQ7Z333 2677 aaKnown RBP7.57□□□□□ -1.2
LMX1B-201ENST00000355497 KRTAP13-3Q3SY46 172 aa7.56□□□□□ -1.2
LMX1B-201ENST00000355497 FRYQ5TBA9 3013 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms