RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 ZZEF1O43149 2961 aa4.57□□□□□ -1.68
ZNF540-201ENST00000316433 ZFHX4Q86UP3 3567 aa4.57□□□□□ -1.68
ZNF540-201ENST00000316433 IGHV4-38-2P0DP08 117 aa4.57□□□□□ -1.68
ZNF540-201ENST00000316433 TRBV6-8A0A0A6YYG3 113 aa4.57□□□□□ -1.68
ZNF540-201ENST00000316433 LINC00158P58513 81 aa4.57□□□□□ -1.68
ZNF540-201ENST00000316433 TRBV6-4A0A1B0GX49 114 aa4.56□□□□□ -1.68
ZNF540-201ENST00000316433 LY6HO94772 140 aa4.56□□□□□ -1.68
ZNF540-201ENST00000316433 PDE6GP18545 87 aa4.56□□□□□ -1.68
ZNF540-201ENST00000316433 C9orf66Q5T8R8 295 aa4.55□□□□□ -1.68
ZNF540-201ENST00000316433 CYP4F30PQ9H0H9 118 aa4.55□□□□□ -1.68
ZNF540-201ENST00000316433 CDC42SE2Q9NRR3 84 aa4.55□□□□□ -1.68
ZNF540-201ENST00000316433 ABCA2Q9BZC7 2435 aa4.55□□□□□ -1.68
ZNF540-201ENST00000316433 IGHV3-73A0A0B4J1V6 119 aa4.55□□□□□ -1.68
ZNF540-201ENST00000316433 NKAPP1Q8N9T2 125 aa4.55□□□□□ -1.68
ZNF540-201ENST00000316433 COX7B2Q8TF08 81 aa4.55□□□□□ -1.68
ZNF540-201ENST00000316433 CCL19Q99731 98 aa4.55□□□□□ -1.68
ZNF540-201ENST00000316433 MAP6D1Q9H9H5 199 aa4.55□□□□□ -1.68
ZNF540-201ENST00000316433 PROK1P58294 105 aa4.54□□□□□ -1.68
ZNF540-201ENST00000316433 BDP1A6H8Y1 2624 aa4.54□□□□□ -1.68
ZNF540-201ENST00000316433 ICE1Q9Y2F5 2266 aa4.54□□□□□ -1.68
ZNF540-201ENST00000316433 K7EQD1 137 aa4.54□□□□□ -1.68
ZNF540-201ENST00000316433 COX17Q14061 63 aa4.54□□□□□ -1.68
ZNF540-201ENST00000316433 BOD1L1Q8NFC6 3051 aa4.53□□□□□ -1.68
ZNF540-201ENST00000316433 IGHV4-28A0A0C4DH34 117 aa4.53□□□□□ -1.68
ZNF540-201ENST00000316433 A0A1B0GUV1 79 aa4.53□□□□□ -1.68
ZNF540-201ENST00000316433 IGKV4-1P06312 121 aa4.53□□□□□ -1.68
ZNF540-201ENST00000316433 LIMD2Q9BT23 127 aa4.53□□□□□ -1.68
ZNF540-201ENST00000316433 DEFB114Q30KQ6 69 aa4.53□□□□□ -1.68
ZNF540-201ENST00000316433 C16orf74Q96GX8 76 aa4.53□□□□□ -1.68
ZNF540-201ENST00000316433 MDFIQ99750 246 aa4.53□□□□□ -1.68
ZNF540-201ENST00000316433 WNK2Q9Y3S1 2297 aa4.53□□□□□ -1.68
ZNF540-201ENST00000316433 KALRNO60229 2985 aa4.53□□□□□ -1.68
ZNF540-201ENST00000316433 LCE6AA0A183 80 aa4.52□□□□□ -1.69
ZNF540-201ENST00000316433 NANOS2P60321 138 aaKnown RBP4.52□□□□□ -1.69
ZNF540-201ENST00000316433 Q8N9L7 120 aa4.52□□□□□ -1.69
ZNF540-201ENST00000316433 LINC01006Q8NI28 216 aa4.52□□□□□ -1.69
ZNF540-201ENST00000316433 HRNRQ86YZ3 2850 aaPredicted RBP4.52□□□□□ -1.69
ZNF540-201ENST00000316433 PRR15LQ9BU68 103 aa4.52□□□□□ -1.69
ZNF540-201ENST00000316433 SMG1Q96Q15 3661 aaKnown RBP4.52□□□□□ -1.69
ZNF540-201ENST00000316433 ABCA4P78363 2273 aa4.52□□□□□ -1.69
ZNF540-201ENST00000316433 IGKV3-7A0A075B6H7 116 aa4.52□□□□□ -1.69
ZNF540-201ENST00000316433 IGHV4-30-2A0A087WSY4 118 aa4.52□□□□□ -1.69
ZNF540-201ENST00000316433 C19orf84I3L1E1 186 aa4.52□□□□□ -1.69
ZNF540-201ENST00000316433 TOMM7Q9P0U1 55 aa4.52□□□□□ -1.69
ZNF540-201ENST00000316433 A6NED7 52 aa4.51□□□□□ -1.69
ZNF540-201ENST00000316433 SPINK13Q1W4C9 94 aa4.51□□□□□ -1.69
ZNF540-201ENST00000316433 ZCCHC13Q8WW36 166 aaKnown RBP4.51□□□□□ -1.69
ZNF540-201ENST00000316433 ZNF292O60281 2723 aa4.51□□□□□ -1.69
ZNF540-201ENST00000316433 SORL1Q92673 2214 aa4.51□□□□□ -1.69
ZNF540-201ENST00000316433 LAMA5O15230 3695 aa4.51□□□□□ -1.69
ZNF540-201ENST00000316433 DEFB112Q30KQ8 113 aa4.51□□□□□ -1.69
ZNF540-201ENST00000316433 Q75L30 129 aa4.51□□□□□ -1.69
ZNF540-201ENST00000316433 Q8N9P0 234 aaPredicted RBP4.51□□□□□ -1.69
ZNF540-201ENST00000316433 CDC42SE1Q9NRR8 79 aa4.51□□□□□ -1.69
ZNF540-201ENST00000316433 IGHV4-31P0DP07 118 aa4.5□□□□□ -1.69
ZNF540-201ENST00000316433 Q6ZSN1 163 aa4.5□□□□□ -1.69
ZNF540-201ENST00000316433 IGHV3OR16-9A0A0B4J2B5 98 aa4.5□□□□□ -1.69
ZNF540-201ENST00000316433 PRR4Q16378 134 aa4.5□□□□□ -1.69
ZNF540-201ENST00000316433 LINC00575Q6W349 94 aa4.5□□□□□ -1.69
ZNF540-201ENST00000316433 Q8IZM0 81 aa4.5□□□□□ -1.69
ZNF540-201ENST00000316433 FAM30AQ9NZY2 134 aa4.5□□□□□ -1.69
ZNF540-201ENST00000316433 DMXL1Q9Y485 3027 aa4.5□□□□□ -1.69
ZNF540-201ENST00000316433 PRB2P02812 416 aaPredicted RBP4.49□□□□□ -1.69
ZNF540-201ENST00000316433 CSNK1G2-AS1Q8NCQ2 148 aa4.49□□□□□ -1.69
ZNF540-201ENST00000316433 IGLV4-60A0A075B6I1 120 aa4.49□□□□□ -1.69
ZNF540-201ENST00000316433 IGHV3-11P01762 117 aa4.49□□□□□ -1.69
ZNF540-201ENST00000316433 GVQW2A0A096LPI5 108 aaPredicted RBP4.49□□□□□ -1.69
ZNF540-201ENST00000316433 MOBPQ13875 183 aa4.49□□□□□ -1.69
ZNF540-201ENST00000316433 LINC01554Q52M75 96 aa4.49□□□□□ -1.69
ZNF540-201ENST00000316433 BRD3OSQ6XYD6 125 aa4.49□□□□□ -1.69
ZNF540-201ENST00000316433 CELA1Q9UNI1 258 aa4.49□□□□□ -1.69
ZNF540-201ENST00000316433 CR1P17927 2039 aa4.48□□□□□ -1.69
ZNF540-201ENST00000316433 A0A1B0GW54 56 aa4.48□□□□□ -1.69
ZNF540-201ENST00000316433 CCL24O00175 119 aa4.48□□□□□ -1.69
ZNF540-201ENST00000316433 C6orf99Q4VX62 202 aa4.48□□□□□ -1.69
ZNF540-201ENST00000316433 EP300Q09472 2414 aaPredicted RBP4.48□□□□□ -1.69
ZNF540-201ENST00000316433 ANKHD1Q8IWZ3 2542 aaKnown RBP4.48□□□□□ -1.69
ZNF540-201ENST00000316433 ODF3L2Q3SX64 289 aa4.48□□□□□ -1.69
ZNF540-201ENST00000316433 C19orf73Q9NVV2 129 aa4.48□□□□□ -1.69
ZNF540-201ENST00000316433 CEP250Q9BV73 2442 aa4.48□□□□□ -1.69
ZNF540-201ENST00000316433 IGKV3-20P01619 116 aa4.47□□□□□ -1.69
ZNF540-201ENST00000316433 SMIM29Q86T20 159 aa4.47□□□□□ -1.69
ZNF540-201ENST00000316433 DEFB131AP59861 70 aa4.47□□□□□ -1.69
ZNF540-201ENST00000316433 GIG44P09565 113 aaPredicted RBP4.47□□□□□ -1.69
ZNF540-201ENST00000316433 LINC00313P59037 77 aa4.47□□□□□ -1.69
ZNF540-201ENST00000316433 C9orf116Q5BN46 136 aaPredicted RBP4.47□□□□□ -1.69
ZNF540-201ENST00000316433 X6R8D5 127 aa4.47□□□□□ -1.69
ZNF540-201ENST00000316433 AKAP13Q12802 2813 aa4.47□□□□□ -1.69
ZNF540-201ENST00000316433 MED13LQ71F56 2210 aa4.46□□□□□ -1.69
ZNF540-201ENST00000316433 CACNA1HO95180 2353 aa4.46□□□□□ -1.69
ZNF540-201ENST00000316433 RP1L1Q8IWN7 2480 aaPredicted RBP4.46□□□□□ -1.7
ZNF540-201ENST00000316433 PRR3P79522 188 aaKnown RBP4.46□□□□□ -1.7
ZNF540-201ENST00000316433 CNOT1A5YKK6 2376 aaKnown RBP4.46□□□□□ -1.7
ZNF540-201ENST00000316433 LOC101927531A0A1B0GV80 90 aa4.46□□□□□ -1.7
ZNF540-201ENST00000316433 LY6EQ16553 131 aa4.46□□□□□ -1.7
ZNF540-201ENST00000316433 B9D2Q9BPU9 175 aa4.46□□□□□ -1.7
ZNF540-201ENST00000316433 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.45□□□□□ -1.7
ZNF540-201ENST00000316433 NDUFB1O75438 58 aa4.45□□□□□ -1.7
ZNF540-201ENST00000316433 ELOF1P60002 83 aaKnown RBP4.45□□□□□ -1.7
ZNF540-201ENST00000316433 C10orf25Q5T742 122 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms