RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 NISCHQ9Y2I1 1504 aa13.58□□□□□ -0.24
ZNF540-201ENST00000316433 CCDC180Q9P1Z9 1646 aa11.97□□□□□ -0.49
ZNF540-201ENST00000316433 PELP1Q8IZL8 1130 aaKnown RBP11.81□□□□□ -0.52
ZNF540-201ENST00000316433 DCAF1Q9Y4B6 1507 aa11.63□□□□□ -0.55
ZNF540-201ENST00000316433 ZCCHC6Q5VYS8 1495 aaKnown RBP11.63□□□□□ -0.55
ZNF540-201ENST00000316433 MYT1Q01538 1121 aa11.57□□□□□ -0.56
ZNF540-201ENST00000316433 MYO15BQ96JP2 1530 aa11.35□□□□□ -0.59
ZNF540-201ENST00000316433 HRCP23327 699 aa11.18□□□□□ -0.62
ZNF540-201ENST00000316433 TTBK1Q5TCY1 1321 aaPredicted RBP11.08□□□□□ -0.64
ZNF540-201ENST00000316433 ABCC9O60706 1549 aa11.05□□□□□ -0.64
ZNF540-201ENST00000316433 SCAF1Q9H7N4 1312 aaKnown RBP10.92□□□□□ -0.66
ZNF540-201ENST00000316433 CHIC1Q5VXU3 224 aa10.88□□□□□ -0.67
ZNF540-201ENST00000316433 PPARGC1BQ86YN6 1023 aaKnown RBP10.86□□□□□ -0.67
ZNF540-201ENST00000316433 NACADO15069 1562 aa10.81□□□□□ -0.68
ZNF540-201ENST00000316433 PRKCSHP14314 528 aaPredicted RBP10.77□□□□□ -0.69
ZNF540-201ENST00000316433 RB1CC1Q8TDY2 1594 aa10.76□□□□□ -0.69
ZNF540-201ENST00000316433 AEBP2Q6ZN18 517 aaPredicted RBP10.75□□□□□ -0.69
ZNF540-201ENST00000316433 EIF4G1Q04637 1599 aaKnown RBP10.71□□□□□ -0.7
ZNF540-201ENST00000316433 BCL11AQ9H165 835 aa10.66□□□□□ -0.7
ZNF540-201ENST00000316433 BAZ1AQ9NRL2 1556 aaPredicted RBP10.61□□□□□ -0.71
ZNF540-201ENST00000316433 RSF1Q96T23 1441 aaPredicted RBP10.6□□□□□ -0.71
ZNF540-201ENST00000316433 SHROOM4Q9ULL8 1493 aa10.6□□□□□ -0.71
ZNF540-201ENST00000316433 PCGF6Q9BYE7 350 aa10.59□□□□□ -0.71
ZNF540-201ENST00000316433 SLC24A1O60721 1099 aa10.56□□□□□ -0.72
ZNF540-201ENST00000316433 ERICH6Q7L0X2 663 aa10.55□□□□□ -0.72
ZNF540-201ENST00000316433 FAM9AQ8IZU1 332 aaPredicted RBP10.54□□□□□ -0.72
ZNF540-201ENST00000316433 PEG3Q9GZU2 1588 aa10.5□□□□□ -0.73
ZNF540-201ENST00000316433 APLP2Q06481 763 aa10.49□□□□□ -0.73
ZNF540-201ENST00000316433 ACIN1Q9UKV3 1341 aaKnown RBP10.47□□□□□ -0.73
ZNF540-201ENST00000316433 SCRIBQ14160 1630 aa10.47□□□□□ -0.73
ZNF540-201ENST00000316433 CENPBP07199 599 aaPredicted RBP10.47□□□□□ -0.73
ZNF540-201ENST00000316433 TOP2AP11388 1531 aaKnown RBP10.43□□□□□ -0.74
ZNF540-201ENST00000316433 SUPT5HO00267 1087 aaKnown RBP10.42□□□□□ -0.74
ZNF540-201ENST00000316433 GTF3C3Q9Y5Q9 886 aa10.39□□□□□ -0.75
ZNF540-201ENST00000316433 UNC13AQ9UPW8 1703 aa10.38□□□□□ -0.75
ZNF540-201ENST00000316433 NEUROD1Q13562 356 aa10.38□□□□□ -0.75
ZNF540-201ENST00000316433 WRNQ14191 1432 aaPredicted RBP eCLIP10.37□□□□□ -0.75
ZNF540-201ENST00000316433 SMARCA4P51532 1647 aa10.36□□□□□ -0.75
ZNF540-201ENST00000316433 ZEB1P37275 1124 aaPredicted RBP10.36□□□□□ -0.75
ZNF540-201ENST00000316433 MROH2BQ7Z745 1585 aa10.35□□□□□ -0.75
ZNF540-201ENST00000316433 EEA1Q15075 1411 aa10.34□□□□□ -0.75
ZNF540-201ENST00000316433 TRIM26Q12899 539 aaPredicted RBP10.31□□□□□ -0.76
ZNF540-201ENST00000316433 WIZO95785 1651 aa10.3□□□□□ -0.76
ZNF540-201ENST00000316433 SMARCA2P51531 1590 aa10.29□□□□□ -0.76
ZNF540-201ENST00000316433 ANP32EQ9BTT0 268 aa10.24□□□□□ -0.77
ZNF540-201ENST00000316433 KIF21BO75037 1637 aa10.24□□□□□ -0.77
ZNF540-201ENST00000316433 CECR2Q9BXF3 1484 aa10.21□□□□□ -0.77
ZNF540-201ENST00000316433 BICRAQ9NZM4 1560 aa10.16□□□□□ -0.78
ZNF540-201ENST00000316433 BAZ1BQ9UIG0 1483 aaKnown RBP10.15□□□□□ -0.78
ZNF540-201ENST00000316433 PRDM2Q13029 1718 aa10.14□□□□□ -0.79
ZNF540-201ENST00000316433 BIVM-ERCC5R4GMW8 1640 aa10.14□□□□□ -0.79
ZNF540-201ENST00000316433 CSRNP3Q8WYN3 585 aa10.13□□□□□ -0.79
ZNF540-201ENST00000316433 TNIKQ9UKE5 1360 aa10.11□□□□□ -0.79
ZNF540-201ENST00000316433 CCDC88BA6NC98 1476 aa10.1□□□□□ -0.79
ZNF540-201ENST00000316433 ERICH3Q5RHP9 1530 aa10.07□□□□□ -0.8
ZNF540-201ENST00000316433 HMGXB3Q12766 1538 aa10.06□□□□□ -0.8
ZNF540-201ENST00000316433 TOP2BQ02880 1626 aa10.03□□□□□ -0.8
ZNF540-201ENST00000316433 GOLGA3Q08378 1498 aa10.02□□□□□ -0.8
ZNF540-201ENST00000316433 TRIM41Q8WV44 630 aa10.01□□□□□ -0.81
ZNF540-201ENST00000316433 CEP164Q9UPV0 1460 aa10□□□□□ -0.81
ZNF540-201ENST00000316433 CUX2O14529 1486 aa9.96□□□□□ -0.81
ZNF540-201ENST00000316433 MAP3K1Q13233 1512 aa9.96□□□□□ -0.82
ZNF540-201ENST00000316433 CEP162Q5TB80 1403 aa9.95□□□□□ -0.82
ZNF540-201ENST00000316433 LOC105371045A0A1W2PR82 267 aa9.95□□□□□ -0.82
ZNF540-201ENST00000316433 SYNJ1O43426 1573 aa9.95□□□□□ -0.82
ZNF540-201ENST00000316433 DIEXFQ68CQ4 756 aaKnown RBP9.93□□□□□ -0.82
ZNF540-201ENST00000316433 ATAD2BQ9ULI0 1458 aa9.92□□□□□ -0.82
ZNF540-201ENST00000316433 ABCC8Q09428 1581 aa9.92□□□□□ -0.82
ZNF540-201ENST00000316433 CLSPNQ9HAW4 1339 aa9.9□□□□□ -0.82
ZNF540-201ENST00000316433 ANO8Q9HCE9 1232 aaPredicted RBP9.9□□□□□ -0.82
ZNF540-201ENST00000316433 DCAF8L2P0C7V8 631 aa9.89□□□□□ -0.83
ZNF540-201ENST00000316433 TSHZ2Q9NRE2 1034 aa9.88□□□□□ -0.83
ZNF540-201ENST00000316433 EIF5BO60841 1220 aaKnown RBP9.88□□□□□ -0.83
ZNF540-201ENST00000316433 VPS8Q8N3P4 1428 aa9.86□□□□□ -0.83
ZNF540-201ENST00000316433 UBE2Q2Q8WVN8 375 aa9.86□□□□□ -0.83
ZNF540-201ENST00000316433 NCAPD3P42695 1498 aa9.86□□□□□ -0.83
ZNF540-201ENST00000316433 PRXQ9BXM0 1461 aa9.86□□□□□ -0.83
ZNF540-201ENST00000316433 DAXXQ9UER7 740 aaPredicted RBP9.86□□□□□ -0.83
ZNF540-201ENST00000316433 SOGA1O94964 1423 aa9.8□□□□□ -0.84
ZNF540-201ENST00000316433 YTHDC1Q96MU7 727 aaKnown RBP9.8□□□□□ -0.84
ZNF540-201ENST00000316433 CFAP43Q8NDM7 1665 aa9.79□□□□□ -0.84
ZNF540-201ENST00000316433 RRBP1Q9P2E9 1410 aaKnown RBP9.78□□□□□ -0.84
ZNF540-201ENST00000316433 KIF21AQ7Z4S6 1674 aa9.77□□□□□ -0.85
ZNF540-201ENST00000316433 CFTRP13569 1480 aa9.76□□□□□ -0.85
ZNF540-201ENST00000316433 SUPT16HQ9Y5B9 1047 aaKnown RBP9.75□□□□□ -0.85
ZNF540-201ENST00000316433 CLIP1P30622 1438 aa9.74□□□□□ -0.85
ZNF540-201ENST00000316433 CC2D2AQ9P2K1 1620 aa9.72□□□□□ -0.85
ZNF540-201ENST00000316433 ARAP1Q96P48 1450 aa9.72□□□□□ -0.85
ZNF540-201ENST00000316433 SALL2Q9Y467 1007 aaPredicted RBP9.71□□□□□ -0.85
ZNF540-201ENST00000316433 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.71□□□□□ -0.86
ZNF540-201ENST00000316433 RUSC2Q8N2Y8 1516 aa9.71□□□□□ -0.86
ZNF540-201ENST00000316433 AQRO60306 1485 aaKnown RBP eCLIP9.7□□□□□ -0.86
ZNF540-201ENST00000316433 WDR97A6NE52 1622 aa9.7□□□□□ -0.86
ZNF540-201ENST00000316433 CUX1P39880 1505 aa9.7□□□□□ -0.86
ZNF540-201ENST00000316433 THOC2Q8NI27 1593 aaKnown RBP9.69□□□□□ -0.86
ZNF540-201ENST00000316433 CUL7Q14999 1698 aa9.69□□□□□ -0.86
ZNF540-201ENST00000316433 EFCAB5A4FU69 1503 aa9.69□□□□□ -0.86
ZNF540-201ENST00000316433 ERICH6BQ5W0A0 696 aa9.67□□□□□ -0.86
ZNF540-201ENST00000316433 RAPGEF2Q9Y4G8 1499 aa9.66□□□□□ -0.86
ZNF540-201ENST00000316433 MYT1LQ9UL68 1186 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms