RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 NAV2Q8IVL1 2488 aa0.56□□□□□ -2.32
UPF3B-203ENST00000478840 CACNA1CQ13936 2221 aa0.56□□□□□ -2.32
UPF3B-203ENST00000478840 TOPAZ1Q8N9V7 1692 aa0.56□□□□□ -2.32
UPF3B-203ENST00000478840 FYCO1Q9BQS8 1478 aa0.55□□□□□ -2.32
UPF3B-203ENST00000478840 SPTBN2O15020 2390 aa0.55□□□□□ -2.32
UPF3B-203ENST00000478840 PRDM15P57071 1507 aaPredicted RBP0.55□□□□□ -2.32
UPF3B-203ENST00000478840 TRBV6-1A0A0K0K1D8 114 aa0.55□□□□□ -2.32
UPF3B-203ENST00000478840 FAM223BA6NKX1 122 aa0.55□□□□□ -2.32
UPF3B-203ENST00000478840 M0R3E3 92 aa0.55□□□□□ -2.32
UPF3B-203ENST00000478840 ATOX1O00244 68 aa0.55□□□□□ -2.32
UPF3B-203ENST00000478840 PIGYQ3MUY2 71 aa0.55□□□□□ -2.32
UPF3B-203ENST00000478840 C10orf113Q5VZT2 155 aa0.55□□□□□ -2.32
UPF3B-203ENST00000478840 Q8IZM0 81 aa0.55□□□□□ -2.32
UPF3B-203ENST00000478840 VAMP8Q9BV40 100 aa0.55□□□□□ -2.32
UPF3B-203ENST00000478840 CHD1O14646 1710 aa0.55□□□□□ -2.32
UPF3B-203ENST00000478840 ADGRL2O95490 1459 aa0.54□□□□□ -2.32
UPF3B-203ENST00000478840 PHGR1C9JFL3 82 aa0.54□□□□□ -2.32
UPF3B-203ENST00000478840 MPC2O95563 127 aa0.54□□□□□ -2.32
UPF3B-203ENST00000478840 MT-ATP8P03928 68 aa0.54□□□□□ -2.32
UPF3B-203ENST00000478840 SFTA2Q6UW10 78 aa0.54□□□□□ -2.32
UPF3B-203ENST00000478840 CACFD1Q9UGQ2 172 aa0.54□□□□□ -2.32
UPF3B-203ENST00000478840 TOP2BQ02880 1626 aa0.53□□□□□ -2.32
UPF3B-203ENST00000478840 PTPRZ1P23471 2315 aaPredicted RBP0.53□□□□□ -2.32
UPF3B-203ENST00000478840 ZFHX3Q15911 3703 aa0.53□□□□□ -2.32
UPF3B-203ENST00000478840 PMCHL2Q9BQD1 86 aa0.53□□□□□ -2.32
UPF3B-203ENST00000478840 BIVM-ERCC5R4GMW8 1640 aa0.53□□□□□ -2.33
UPF3B-203ENST00000478840 ABCA3Q99758 1704 aa0.52□□□□□ -2.33
UPF3B-203ENST00000478840 C10orf142B7Z368 130 aa0.52□□□□□ -2.33
UPF3B-203ENST00000478840 I3L2K1 104 aa0.52□□□□□ -2.33
UPF3B-203ENST00000478840 PMCHL1Q16048 86 aa0.52□□□□□ -2.33
UPF3B-203ENST00000478840 NCMAPQ5T1S8 102 aa0.52□□□□□ -2.33
UPF3B-203ENST00000478840 TRGV9Q99603 122 aa0.52□□□□□ -2.33
UPF3B-203ENST00000478840 MAGI1Q96QZ7 1491 aaPredicted RBP0.52□□□□□ -2.33
UPF3B-203ENST00000478840 MLH3Q9UHC1 1453 aa0.52□□□□□ -2.33
UPF3B-203ENST00000478840 TRBV25-1A0A075B6N4 114 aa0.51□□□□□ -2.33
UPF3B-203ENST00000478840 POLA1P09884 1462 aaPredicted RBP0.51□□□□□ -2.33
UPF3B-203ENST00000478840 GOLGA4Q13439 2230 aaKnown RBP0.51□□□□□ -2.33
UPF3B-203ENST00000478840 COL5A1-AS1Q5SY13 56 aa0.51□□□□□ -2.33
UPF3B-203ENST00000478840 SERP2Q8N6R1 65 aa0.51□□□□□ -2.33
UPF3B-203ENST00000478840 C2CD3Q4AC94 2353 aa0.5□□□□□ -2.33
UPF3B-203ENST00000478840 ANKRD36BQ8N2N9 1353 aa0.5□□□□□ -2.33
UPF3B-203ENST00000478840 PKIAP61925 76 aa0.5□□□□□ -2.33
UPF3B-203ENST00000478840 WFDC2Q14508 124 aa0.5□□□□□ -2.33
UPF3B-203ENST00000478840 ZFYVE26Q68DK2 2539 aa0.49□□□□□ -2.33
UPF3B-203ENST00000478840 CCNB3Q8WWL7 1395 aa0.49□□□□□ -2.33
UPF3B-203ENST00000478840 A0A0G2JND7 137 aa0.49□□□□□ -2.33
UPF3B-203ENST00000478840 TRBV7-4A0A0J9YYF1 115 aa0.49□□□□□ -2.33
UPF3B-203ENST00000478840 FDCSPQ8NFU4 85 aa0.49□□□□□ -2.33
UPF3B-203ENST00000478840 LINC01600Q96MT4 127 aa0.49□□□□□ -2.33
UPF3B-203ENST00000478840 U3KQA8 63 aa0.49□□□□□ -2.33
UPF3B-203ENST00000478840 BTAF1O14981 1849 aa0.49□□□□□ -2.33
UPF3B-203ENST00000478840 CHD9Q3L8U1 2897 aa0.49□□□□□ -2.33
UPF3B-203ENST00000478840 NHSL1Q5SYE7 1610 aa0.49□□□□□ -2.33
UPF3B-203ENST00000478840 MYO7BQ6PIF6 2116 aa0.49□□□□□ -2.33
UPF3B-203ENST00000478840 ARHGEF12Q9NZN5 1544 aa0.48□□□□□ -2.33
UPF3B-203ENST00000478840 H7BZZ5 65 aa0.48□□□□□ -2.33
UPF3B-203ENST00000478840 CFDP00746 253 aaPredicted RBP0.48□□□□□ -2.33
UPF3B-203ENST00000478840 UQCRHP07919 91 aa0.48□□□□□ -2.33
UPF3B-203ENST00000478840 PSMG4Q5JS54 123 aa0.48□□□□□ -2.33
UPF3B-203ENST00000478840 SCN7AQ01118 1682 aa0.47□□□□□ -2.33
UPF3B-203ENST00000478840 COL4A6Q14031 1691 aa0.47□□□□□ -2.33
UPF3B-203ENST00000478840 C7orf77A4D0Y5 90 aa0.47□□□□□ -2.33
UPF3B-203ENST00000478840 Q5VSD8 79 aa0.47□□□□□ -2.33
UPF3B-203ENST00000478840 C1orf167Q5SNV9 1468 aa0.47□□□□□ -2.33
UPF3B-203ENST00000478840 PLCE1Q9P212 2302 aa0.47□□□□□ -2.33
UPF3B-203ENST00000478840 FAT4Q6V0I7 4981 aa0.46□□□□□ -2.34
UPF3B-203ENST00000478840 IGF2RP11717 2491 aa0.46□□□□□ -2.34
UPF3B-203ENST00000478840 ASIPP42127 132 aa0.46□□□□□ -2.34
UPF3B-203ENST00000478840 DEFB123Q8N688 67 aa0.46□□□□□ -2.34
UPF3B-203ENST00000478840 ABCC10Q5T3U5 1492 aa0.46□□□□□ -2.34
UPF3B-203ENST00000478840 PAPPAQ13219 1627 aa0.46□□□□□ -2.34
UPF3B-203ENST00000478840 ABCC2Q92887 1545 aa0.45□□□□□ -2.34
UPF3B-203ENST00000478840 TRBV7-7A0A0K0K1E9 115 aa0.45□□□□□ -2.34
UPF3B-203ENST00000478840 H3BQF6 201 aa0.45□□□□□ -2.34
UPF3B-203ENST00000478840 SYNE1Q8NF91 8797 aaKnown RBP0.44□□□□□ -2.34
UPF3B-203ENST00000478840 TULP4Q9NRJ4 1543 aa0.44□□□□□ -2.34
UPF3B-203ENST00000478840 RAPGEF2Q9Y4G8 1499 aa0.44□□□□□ -2.34
UPF3B-203ENST00000478840 SYS1-DBNDD2H3BUS1 97 aa0.44□□□□□ -2.34
UPF3B-203ENST00000478840 HMGN3Q15651 99 aa0.44□□□□□ -2.34
UPF3B-203ENST00000478840 SNHG12Q9BXW3 62 aa0.44□□□□□ -2.34
UPF3B-203ENST00000478840 SETBP1Q9Y6X0 1596 aa0.44□□□□□ -2.34
UPF3B-203ENST00000478840 MAST4O15021 2626 aa0.43□□□□□ -2.34
UPF3B-203ENST00000478840 FXYD6-FXYD2A0A087WZ82 144 aa0.43□□□□□ -2.34
UPF3B-203ENST00000478840 UQCRHLA0A096LP55 91 aa0.43□□□□□ -2.34
UPF3B-203ENST00000478840 COX6B1P14854 86 aa0.43□□□□□ -2.34
UPF3B-203ENST00000478840 PDCD11Q14690 1871 aaKnown RBP0.43□□□□□ -2.34
UPF3B-203ENST00000478840 OTOGQ6ZRI0 2925 aa0.42□□□□□ -2.34
UPF3B-203ENST00000478840 TROQ12816 1431 aaPredicted RBP0.42□□□□□ -2.34
UPF3B-203ENST00000478840 A0A087WVE0 104 aa0.42□□□□□ -2.34
UPF3B-203ENST00000478840 FAUP35544 74 aaKnown RBP0.42□□□□□ -2.34
UPF3B-203ENST00000478840 ZNF292O60281 2723 aa0.42□□□□□ -2.34
UPF3B-203ENST00000478840 NUP188Q5SRE5 1749 aa0.41□□□□□ -2.34
UPF3B-203ENST00000478840 LINC00959A0A1B0GUT2 108 aa0.41□□□□□ -2.34
UPF3B-203ENST00000478840 GYPAP02724 150 aa0.41□□□□□ -2.34
UPF3B-203ENST00000478840 DEFB109BQ30KR1 87 aa0.41□□□□□ -2.34
UPF3B-203ENST00000478840 ALKAL2Q6UX46 152 aa0.41□□□□□ -2.34
UPF3B-203ENST00000478840 ZNF720Q7Z2F6 126 aa0.41□□□□□ -2.34
UPF3B-203ENST00000478840 A0A0G2JMZ2 1700 aa0.41□□□□□ -2.34
UPF3B-203ENST00000478840 PLEKHH2Q8IVE3 1493 aa0.41□□□□□ -2.34
UPF3B-203ENST00000478840 AKAP6Q13023 2319 aa0.41□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 691.8 ms