RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 AEBP2Q6ZN18 517 aaPredicted RBP21.49■■□□□ 1.03
UPF3B-203ENST00000478840 CHIC1Q5VXU3 224 aa20.69■□□□□ 0.9
UPF3B-203ENST00000478840 PHF23Q9BUL5 403 aaPredicted RBP18.26■□□□□ 0.51
UPF3B-203ENST00000478840 SENP3Q9H4L4 574 aaPredicted RBP18.1■□□□□ 0.49
UPF3B-203ENST00000478840 PLPPR3Q6T4P5 718 aa16.97■□□□□ 0.31
UPF3B-203ENST00000478840 FOXD1Q16676 465 aa16.94■□□□□ 0.3
UPF3B-203ENST00000478840 PPP6R1Q9UPN7 881 aa16.21■□□□□ 0.19
UPF3B-203ENST00000478840 ADRA2BP18089 450 aa16.19■□□□□ 0.18
UPF3B-203ENST00000478840 PIAS4Q8N2W9 510 aaPredicted RBP15.91■□□□□ 0.14
UPF3B-203ENST00000478840 MSH5O43196 834 aa15.68■□□□□ 0.1
UPF3B-203ENST00000478840 KCNA4P22459 653 aa15.39■□□□□ 0.05
UPF3B-203ENST00000478840 EHMT2Q96KQ7 1210 aa15.02■□□□□ -0
UPF3B-203ENST00000478840 PPP4R3CPQ6ZMV5 832 aa15.01□□□□□ -0.01
UPF3B-203ENST00000478840 NCBP3Q53F19 620 aaKnown RBP14.81□□□□□ -0.04
UPF3B-203ENST00000478840 MAPK8IP2Q13387 824 aaPredicted RBP14.78□□□□□ -0.04
UPF3B-203ENST00000478840 POTEDQ86YR6 584 aa14.77□□□□□ -0.05
UPF3B-203ENST00000478840 SLC4A1APQ9BWU0 796 aaKnown RBP14.77□□□□□ -0.05
UPF3B-203ENST00000478840 CSRNP3Q8WYN3 585 aa14.65□□□□□ -0.06
UPF3B-203ENST00000478840 NPM3O75607 178 aaKnown RBP14.61□□□□□ -0.07
UPF3B-203ENST00000478840 SCAF1Q9H7N4 1312 aaKnown RBP14.59□□□□□ -0.07
UPF3B-203ENST00000478840 CNKSR2Q8WXI2 1034 aa14.47□□□□□ -0.09
UPF3B-203ENST00000478840 DMRT2Q9Y5R5 561 aa14.44□□□□□ -0.1
UPF3B-203ENST00000478840 DNAJC5BQ9UF47 199 aa14.25□□□□□ -0.13
UPF3B-203ENST00000478840 ZBTB22O15209 634 aa14.2□□□□□ -0.14
UPF3B-203ENST00000478840 HOXD11P31277 338 aaPredicted RBP14.05□□□□□ -0.16
UPF3B-203ENST00000478840 RNF216Q9NWF9 866 aaPredicted RBP14.05□□□□□ -0.16
UPF3B-203ENST00000478840 FOXD4L1Q9NU39 408 aa14□□□□□ -0.17
UPF3B-203ENST00000478840 DCAF8L1A6NGE4 600 aa13.94□□□□□ -0.18
UPF3B-203ENST00000478840 SLC4A2P04920 1241 aa13.65□□□□□ -0.22
UPF3B-203ENST00000478840 ATXN8OSP0DMR3 200 aa13.52□□□□□ -0.25
UPF3B-203ENST00000478840 MYCNP04198 464 aaPredicted RBP13.48□□□□□ -0.25
UPF3B-203ENST00000478840 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.44□□□□□ -0.261e-7■□□□□ 9.5
UPF3B-203ENST00000478840 RNF39Q9H2S5 420 aa13.38□□□□□ -0.27
UPF3B-203ENST00000478840 C1QBPQ07021 282 aaKnown RBP13.24□□□□□ -0.29
UPF3B-203ENST00000478840 U3KPZ7 1027 aaPredicted RBP13.23□□□□□ -0.29
UPF3B-203ENST00000478840 CACNB1Q02641 598 aaPredicted RBP13.22□□□□□ -0.29
UPF3B-203ENST00000478840 AMER1Q5JTC6 1135 aaPredicted RBP13.19□□□□□ -0.3
UPF3B-203ENST00000478840 FKBP8Q14318 412 aa13.15□□□□□ -0.3
UPF3B-203ENST00000478840 RTN4Q9NQC3 1192 aaKnown RBP13.13□□□□□ -0.31
UPF3B-203ENST00000478840 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.07□□□□□ -0.32
UPF3B-203ENST00000478840 HNRNPUL2Q1KMD3 747 aaKnown RBP13.07□□□□□ -0.32
UPF3B-203ENST00000478840 SAMD1Q6SPF0 538 aaPredicted RBP13.05□□□□□ -0.32
UPF3B-203ENST00000478840 ATF5Q9Y2D1 282 aaPredicted RBP13.05□□□□□ -0.32
UPF3B-203ENST00000478840 SPINK5Q9NQ38 1064 aaPredicted RBP12.98□□□□□ -0.33
UPF3B-203ENST00000478840 SLC24A1O60721 1099 aa12.94□□□□□ -0.34
UPF3B-203ENST00000478840 CAPN15O75808 1086 aa12.88□□□□□ -0.35
UPF3B-203ENST00000478840 TRHP20396 242 aaPredicted RBP12.81□□□□□ -0.36
UPF3B-203ENST00000478840 APLP2Q06481 763 aa12.78□□□□□ -0.36
UPF3B-203ENST00000478840 ZNF219Q9P2Y4 722 aaPredicted RBP12.78□□□□□ -0.36
UPF3B-203ENST00000478840 ABCB7O75027 752 aa12.7□□□□□ -0.38
UPF3B-203ENST00000478840 DSG3P32926 999 aa12.69□□□□□ -0.38
UPF3B-203ENST00000478840 FBXO3Q9UK99 471 aa12.56□□□□□ -0.4
UPF3B-203ENST00000478840 SPDYE4A6NLX3 237 aa12.55□□□□□ -0.4
UPF3B-203ENST00000478840 PROM2Q8N271 834 aa12.55□□□□□ -0.4
UPF3B-203ENST00000478840 MKRN4PQ13434 485 aaPredicted RBP12.54□□□□□ -0.4
UPF3B-203ENST00000478840 POLA2Q14181 598 aa12.52□□□□□ -0.41
UPF3B-203ENST00000478840 FBLN2P98095 1184 aa12.45□□□□□ -0.42
UPF3B-203ENST00000478840 VASPP50552 380 aaPredicted RBP12.36□□□□□ -0.43
UPF3B-203ENST00000478840 ZBTB12Q9Y330 459 aaPredicted RBP12.27□□□□□ -0.45
UPF3B-203ENST00000478840 IFNLR1Q8IU57 520 aaPredicted RBP12.24□□□□□ -0.45
UPF3B-203ENST00000478840 PLCB2Q00722 1185 aa12.15□□□□□ -0.46
UPF3B-203ENST00000478840 OSCARQ8IYS5 282 aa12.12□□□□□ -0.47
UPF3B-203ENST00000478840 PKD2Q13563 968 aa12.1□□□□□ -0.47
UPF3B-203ENST00000478840 RBM42Q9BTD8 480 aaKnown RBP12.07□□□□□ -0.48
UPF3B-203ENST00000478840 STAG3Q9UJ98 1225 aa12.01□□□□□ -0.49
UPF3B-203ENST00000478840 SSUH2Q9Y2M2 353 aa12□□□□□ -0.49
UPF3B-203ENST00000478840 SPDYE2BA6NHP3 402 aa11.99□□□□□ -0.49
UPF3B-203ENST00000478840 SPDYE6P0CI01 402 aa11.99□□□□□ -0.49
UPF3B-203ENST00000478840 SPDYE2Q495Y8 402 aa11.99□□□□□ -0.49
UPF3B-203ENST00000478840 ZNF692Q9BU19 519 aaPredicted RBP11.99□□□□□ -0.49
UPF3B-203ENST00000478840 SPOCK2Q92563 424 aa11.98□□□□□ -0.49
UPF3B-203ENST00000478840 DCAF8L2P0C7V8 631 aa11.95□□□□□ -0.5
UPF3B-203ENST00000478840 KLHL34Q8N239 644 aa11.92□□□□□ -0.5
UPF3B-203ENST00000478840 HAP1P54257 671 aaPredicted RBP11.89□□□□□ -0.51
UPF3B-203ENST00000478840 ECM2O94769 699 aaPredicted RBP11.85□□□□□ -0.51
UPF3B-203ENST00000478840 PABPN1Q86U42 306 aaKnown RBP eCLIP11.85□□□□□ -0.51
UPF3B-203ENST00000478840 VSIG10Q8N0Z9 540 aa11.84□□□□□ -0.51
UPF3B-203ENST00000478840 PLCD3Q8N3E9 789 aa11.84□□□□□ -0.51
UPF3B-203ENST00000478840 AKT1S1Q96B36 256 aa11.84□□□□□ -0.51
UPF3B-203ENST00000478840 BBXQ8WY36 941 aaPredicted RBP11.83□□□□□ -0.52
UPF3B-203ENST00000478840 REM2Q8IYK8 340 aaPredicted RBP11.79□□□□□ -0.52
UPF3B-203ENST00000478840 MIER1Q8N108 512 aa11.78□□□□□ -0.52
UPF3B-203ENST00000478840 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.78□□□□□ -0.52
UPF3B-203ENST00000478840 NPM1P06748 294 aaKnown RBP eCLIP11.77□□□□□ -0.53
UPF3B-203ENST00000478840 RGL2O15211 777 aa11.73□□□□□ -0.53
UPF3B-203ENST00000478840 BCANQ96GW7 911 aa11.73□□□□□ -0.53
UPF3B-203ENST00000478840 ZBTB47Q9UFB7 747 aaPredicted RBP11.73□□□□□ -0.53
UPF3B-203ENST00000478840 PITPNM1O00562 1244 aa11.69□□□□□ -0.54
UPF3B-203ENST00000478840 PLEKHG5O94827 1062 aa11.69□□□□□ -0.54
UPF3B-203ENST00000478840 CHRDL2Q6WN34 429 aa11.66□□□□□ -0.54
UPF3B-203ENST00000478840 PAXIP1Q6ZW49 1069 aaPredicted RBP11.66□□□□□ -0.54
UPF3B-203ENST00000478840 TRIM41Q8WV44 630 aa11.66□□□□□ -0.54
UPF3B-203ENST00000478840 CLEC11AQ9Y240 323 aa11.64□□□□□ -0.55
UPF3B-203ENST00000478840 KDM2AQ9Y2K7 1162 aa11.64□□□□□ -0.55
UPF3B-203ENST00000478840 POTEHQ6S545 545 aa11.63□□□□□ -0.55
UPF3B-203ENST00000478840 SPRYD3Q8NCJ5 442 aa11.61□□□□□ -0.55
UPF3B-203ENST00000478840 CFAP44Q96MT7 982 aa11.61□□□□□ -0.55
UPF3B-203ENST00000478840 CIZ1Q9ULV3 898 aaPredicted RBP11.61□□□□□ -0.55
UPF3B-203ENST00000478840 SPDYE1Q8NFV5 336 aaPredicted RBP11.56□□□□□ -0.56
UPF3B-203ENST00000478840 CHGAP10645 457 aaKnown RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms