RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeastyeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB5YLR260W CBP3P21560 335 aa3.8□□□□□ -1.8
LCB5YLR260W MNE1P24720 663 aa3.8□□□□□ -1.8
LCB5YLR260W SEC21P32074 935 aaKnown RBP3.8□□□□□ -1.8
LCB5YLR260W CBF2P32504 956 aa3.8□□□□□ -1.8
LCB5YLR260W WHI3P34761 661 aaKnown RBP3.8□□□□□ -1.8
LCB5YLR260W DID4P36108 232 aa3.8□□□□□ -1.8
LCB5YLR260W CCZ1P38273 704 aa3.8□□□□□ -1.8
LCB5YLR260W BFR1P38934 470 aaKnown RBP RIP-Chip data3.8□□□□□ -1.8not detected
LCB5YLR260W TOK1P40310 691 aa3.8□□□□□ -1.8
LCB5YLR260W LTP1P40347 161 aa3.8□□□□□ -1.8
LCB5YLR260W CCT5P40413 562 aaKnown RBP3.8□□□□□ -1.8
LCB5YLR260W VID28P40547 921 aa3.8□□□□□ -1.8
LCB5YLR260W EPL1P43572 832 aa3.8□□□□□ -1.8
LCB5YLR260W FYV8P46949 817 aaKnown RBP3.8□□□□□ -1.8
LCB5YLR260W LIF1P53150 421 aa3.8□□□□□ -1.8
LCB5YLR260W ARE2P53629 642 aaKnown RBP3.8□□□□□ -1.8
LCB5YLR260W ARC35P53731 342 aaKnown RBP3.8□□□□□ -1.8
LCB5YLR260W BIO5P53744 561 aaKnown RBP3.8□□□□□ -1.8
LCB5YLR260W PEX13P80667 386 aa3.8□□□□□ -1.8
LCB5YLR260W SKY1Q03656 742 aa3.8□□□□□ -1.8
LCB5YLR260W ARP9Q05123 467 aa3.8□□□□□ -1.8
LCB5YLR260W YDR338CQ05497 695 aa3.8□□□□□ -1.8
LCB5YLR260W YPR027CQ12079 277 aa3.8□□□□□ -1.8
LCB5YLR260W NFI1Q12216 726 aa3.8□□□□□ -1.8
LCB5YLR260W GLO4Q12320 285 aa3.8□□□□□ -1.8
LCB5YLR260W TAO3P40468 2376 aa3.8□□□□□ -1.8
LCB5YLR260W SEM1O94742 89 aa3.79□□□□□ -1.8
LCB5YLR260W GUK1P15454 187 aaKnown RBP3.79□□□□□ -1.8
LCB5YLR260W RNR3P21672 869 aaKnown RBP3.79□□□□□ -1.8
LCB5YLR260W KIN82P25341 720 aa3.79□□□□□ -1.8
LCB5YLR260W POT1P27796 417 aaKnown RBP RIP-Chip data3.79□□□□□ -1.8not detected
LCB5YLR260W PPQ1P32945 549 aa3.79□□□□□ -1.8
LCB5YLR260W MDL1P33310 695 aa3.79□□□□□ -1.8
LCB5YLR260W YBR225WP38321 900 aa3.79□□□□□ -1.8
LCB5YLR260W YLF2P38746 405 aa3.79□□□□□ -1.8
LCB5YLR260W TVP23P38962 199 aa3.79□□□□□ -1.8
LCB5YLR260W DUN1P39009 513 aa3.79□□□□□ -1.8
LCB5YLR260W YJL068CP40363 299 aa3.79□□□□□ -1.8
LCB5YLR260W CAF16P43569 289 aa3.79□□□□□ -1.8
LCB5YLR260W JJJ3P47138 172 aa3.79□□□□□ -1.8
LCB5YLR260W TAD1P53065 400 aa3.79□□□□□ -1.8
LCB5YLR260W GAD1Q04792 585 aa3.79□□□□□ -1.8
LCB5YLR260W ATG33Q06485 197 aa3.79□□□□□ -1.8
LCB5YLR260W YCG1Q06680 1035 aa3.79□□□□□ -1.8
LCB5YLR260W AHC1Q12433 566 aa3.79□□□□□ -1.8
LCB5YLR260W ARP6Q12509 438 aa3.79□□□□□ -1.8
LCB5YLR260W GPM1P00950 247 aaKnown RBP3.79□□□□□ -1.8
LCB5YLR260W RPS21AP0C0V8 87 aaKnown RBP3.79□□□□□ -1.8
LCB5YLR260W PDC5P16467 563 aaKnown RBP3.79□□□□□ -1.8
LCB5YLR260W VPS1P21576 704 aaKnown RBP3.79□□□□□ -1.8
LCB5YLR260W ERG3P32353 365 aa3.79□□□□□ -1.8
LCB5YLR260W XRS2P33301 854 aa3.79□□□□□ -1.8
LCB5YLR260W YBR238CP38330 731 aaKnown RBP3.79□□□□□ -1.8
LCB5YLR260W SUL1P38359 859 aa3.79□□□□□ -1.8
LCB5YLR260W SPC72P39723 622 aa3.79□□□□□ -1.8
LCB5YLR260W CIR1P42940 261 aa3.79□□□□□ -1.8
LCB5YLR260W MNP1P53163 194 aaPredicted RBP3.79□□□□□ -1.8
LCB5YLR260W ORC4P54791 529 aa3.79□□□□□ -1.8
LCB5YLR260W YDR131CQ03899 556 aa3.79□□□□□ -1.8
LCB5YLR260W HLR1Q04429 423 aa3.79□□□□□ -1.8
LCB5YLR260W MFB1Q04922 465 aa3.79□□□□□ -1.8
LCB5YLR260W YLR345WQ06137 509 aa3.79□□□□□ -1.8
LCB5YLR260W PMT7Q06644 662 aa3.79□□□□□ -1.8
LCB5YLR260W CLP1Q08685 445 aaPredicted RBP3.79□□□□□ -1.8
LCB5YLR260W ARP7Q12406 477 aa3.79□□□□□ -1.8
LCB5YLR260W PAR32Q12515 295 aaKnown RBP3.79□□□□□ -1.8
LCB5YLR260W YPR117WQ06116 2489 aa3.78□□□□□ -1.8
LCB5YLR260W MET17P06106 444 aa3.78□□□□□ -1.8
LCB5YLR260W HMG1P12683 1054 aa3.78□□□□□ -1.8
LCB5YLR260W ENA1P13587 1091 aa3.78□□□□□ -1.8
LCB5YLR260W CKA1P15790 372 aa3.78□□□□□ -1.8
LCB5YLR260W HOP1P20050 605 aa3.78□□□□□ -1.8
LCB5YLR260W SWI4P25302 1093 aaKnown RBP3.78□□□□□ -1.8
LCB5YLR260W MSH3P25336 1018 aa3.78□□□□□ -1.8
LCB5YLR260W RDH54P38086 958 aa3.78□□□□□ -1.8
LCB5YLR260W HSL7P38274 827 aa3.78□□□□□ -1.8
LCB5YLR260W AIM20P40451 204 aa3.78□□□□□ -1.8
LCB5YLR260W PCI8P40512 444 aa3.78□□□□□ -1.8
LCB5YLR260W YFL040WP43562 540 aa3.78□□□□□ -1.8
LCB5YLR260W AGX1P43567 385 aa3.78□□□□□ -1.8
LCB5YLR260W ASK10P48361 1146 aa3.78□□□□□ -1.8
LCB5YLR260W LSB1P53281 241 aa3.78□□□□□ -1.8
LCB5YLR260W ENA2Q01896 1091 aa3.78□□□□□ -1.8
LCB5YLR260W FMP30Q02883 468 aa3.78□□□□□ -1.8
LCB5YLR260W PEX25Q02969 394 aa3.78□□□□□ -1.8
LCB5YLR260W FDC1Q03034 503 aa3.78□□□□□ -1.8
LCB5YLR260W CWC21Q03375 135 aaKnown RBP3.78□□□□□ -1.8
LCB5YLR260W GIS4Q04233 774 aa3.78□□□□□ -1.8
LCB5YLR260W HPF1Q05164 967 aa3.78□□□□□ -1.8
LCB5YLR260W VID22Q05934 901 aa3.78□□□□□ -1.8
LCB5YLR260W SOG2Q08817 791 aa3.78□□□□□ -1.8
LCB5YLR260W TRM8Q12009 286 aa3.78□□□□□ -1.8
LCB5YLR260W ISA2Q12425 185 aa3.78□□□□□ -1.8
LCB5YLR260W ENA5Q12691 1091 aa3.78□□□□□ -1.8
LCB5YLR260W THR1P17423 357 aaKnown RBP3.77□□□□□ -1.81
LCB5YLR260W NAM7P30771 971 aaKnown RBP3.77□□□□□ -1.81
LCB5YLR260W KNS1P32350 737 aaPredicted RBP3.77□□□□□ -1.81
LCB5YLR260W AAR2P32357 355 aaPredicted RBP3.77□□□□□ -1.81
LCB5YLR260W HOG1P32485 435 aa3.77□□□□□ -1.81
LCB5YLR260W RPN2P32565 945 aaKnown RBP3.77□□□□□ -1.81
Retrieved 100 of 5,963 RNA–protein pairs in 20.7 ms