RNA–Protein interactions for RNA: YHR120W

MSH1, Transcript of DNA-binding protein of the mitochondria, yeast

Gene MSH1, Length 2,880 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSH1	YHR120W	YER189W	P40104	122 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	YFL064C	P43540	174 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	YNL144C	P53907	740 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	SPC24	Q04477	213 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	AIM39	Q08223	395 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	YBL111C	Q3E7Y5	667 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	ENO2	P00925	437 aa	Known RBP	5.22	□□□□□ -1.57
MSH1	YHR120W	FUS1	P11710	512 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	SWE1	P32944	819 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	5.22	□□□□□ -1.57	not detected
MSH1	YHR120W	HSL7	P38274	827 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	DOT6	P40059	670 aa	Known RBP	5.22	□□□□□ -1.57
MSH1	YHR120W	UFE1	P41834	346 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	URB2	P47108	1174 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	ILM1	P47155	203 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	COQ6	P53318	479 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	TOF2	Q02208	771 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	SEG1	Q04279	960 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	ARP7	Q12406	477 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	FAB1	P34756	2278 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	REV1	P12689	985 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	SEC1	P30619	724 aa	Known RBP	5.22	□□□□□ -1.57
MSH1	YHR120W	SEG2	P34250	1132 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	HXT5	P38695	592 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	PMC1	P38929	1173 aa	Predicted RBP	5.22	□□□□□ -1.57
MSH1	YHR120W	INA22	P40576	216 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	TMA22	P47089	198 aa	Predicted RBP	5.22	□□□□□ -1.57
MSH1	YHR120W	YNR061C	P53747	219 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	PMT7	Q06644	662 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	5.22	□□□□□ -1.57	not detected
MSH1	YHR120W	THI20	Q08224	551 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	MPD2	Q99316	277 aa		5.22	□□□□□ -1.57
MSH1	YHR120W	RPS9A	O13516	197 aa	Known RBP	5.21	□□□□□ -1.58
MSH1	YHR120W	YML002W	P0CF17	737 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	NCL1	P38205	684 aa	Known RBP	5.21	□□□□□ -1.58
MSH1	YHR120W	TIF5	P38431	405 aa	Known RBP	5.21	□□□□□ -1.58
MSH1	YHR120W	NMD3	P38861	518 aa	Known RBP	5.21	□□□□□ -1.58
MSH1	YHR120W	TMA108	P40462	946 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	TDA10	P42938	290 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	LSB3	P43603	459 aa	Known RBP	5.21	□□□□□ -1.58
MSH1	YHR120W	NMD5	P46970	1048 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	JJJ1	P53863	590 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	UTP6	Q02354	440 aa	Known RBP	5.21	□□□□□ -1.58
MSH1	YHR120W	ATG16	Q03818	150 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	YLR177W	Q06251	628 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	SVS1	Q12254	260 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	VPS5	Q92331	675 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	5.21	□□□□□ -1.58	not detected
MSH1	YHR120W	ARG1	P22768	420 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	OXP1	P28273	1286 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	GGA2	P38817	585 aa	Known RBP	5.21	□□□□□ -1.58
MSH1	YHR120W	TIF11	P38912	153 aa	Known RBP	5.21	□□□□□ -1.58
MSH1	YHR120W	END3	P39013	349 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	TMN3	P40071	706 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	RMD8	P43620	662 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	YPL014W	Q02606	381 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	SHR3	Q02774	210 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	SXM1	Q04175	944 aa	Known RBP	5.21	□□□□□ -1.58
MSH1	YHR120W	ECM38	Q05902	660 aa	Predicted RBP	5.21	□□□□□ -1.58
MSH1	YHR120W	FLC1	Q08967	793 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	YRR1	Q12172	810 aa		5.21	□□□□□ -1.58
MSH1	YHR120W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	5.21	□□□□□ -1.58	not detected
MSH1	YHR120W	MEX67	Q99257	599 aa	Known RBP	5.21	□□□□□ -1.58
MSH1	YHR120W	SRV2	P17555	526 aa	Known RBP	5.2	□□□□□ -1.58
MSH1	YHR120W	KIN3	P22209	435 aa		5.2	□□□□□ -1.58
MSH1	YHR120W	YIH1	P25637	258 aa		5.2	□□□□□ -1.58
MSH1	YHR120W	GPI10	P30777	616 aa		5.2	□□□□□ -1.58
MSH1	YHR120W	PTC3	P34221	468 aa	Known RBP	5.2	□□□□□ -1.58
MSH1	YHR120W	RPC37	P36121	282 aa		5.2	□□□□□ -1.58
MSH1	YHR120W	SIC1	P38634	284 aa		5.2	□□□□□ -1.58
MSH1	YHR120W	LYS9	P38999	446 aa		5.2	□□□□□ -1.58
MSH1	YHR120W	YGR283C	P53336	341 aa	Predicted RBP	5.2	□□□□□ -1.58
MSH1	YHR120W	IMP4	P53941	290 aa	Known RBP	5.2	□□□□□ -1.58
MSH1	YHR120W	KTR6	P54070	446 aa		5.2	□□□□□ -1.58
MSH1	YHR120W	ELP3	Q02908	557 aa	Known RBP	5.2	□□□□□ -1.58
MSH1	YHR120W	RTN1	Q04947	295 aa	Known RBP	5.2	□□□□□ -1.58
MSH1	YHR120W	FAR8	Q05040	523 aa		5.2	□□□□□ -1.58
MSH1	YHR120W	SFL1	P20134	766 aa		5.2	□□□□□ -1.58
MSH1	YHR120W	ABD1	P32783	436 aa	Predicted RBP	5.2	□□□□□ -1.58
MSH1	YHR120W	SGE1	P33335	543 aa		5.2	□□□□□ -1.58
MSH1	YHR120W	RRT2	P38332	387 aa		5.2	□□□□□ -1.58
MSH1	YHR120W	HIS2	P38635	335 aa		5.2	□□□□□ -1.58
MSH1	YHR120W	PNP1	Q05788	311 aa		5.2	□□□□□ -1.58
MSH1	YHR120W	ADE3	P07245	946 aa	Known RBP	5.19	□□□□□ -1.58
MSH1	YHR120W	ILV2	P07342	687 aa	Known RBP	5.19	□□□□□ -1.58
MSH1	YHR120W	HCM1	P25364	564 aa		5.19	□□□□□ -1.58
MSH1	YHR120W	STE5	P32917	917 aa		5.19	□□□□□ -1.58
MSH1	YHR120W	ECM2	P38241	364 aa	Known RBP	5.19	□□□□□ -1.58
MSH1	YHR120W	HEM14	P40012	539 aa		5.19	□□□□□ -1.58
MSH1	YHR120W	YIL054W	P40524	105 aa		5.19	□□□□□ -1.58
MSH1	YHR120W	ERG10	P41338	398 aa	Known RBP	5.19	□□□□□ -1.58
MSH1	YHR120W	RTT101	P47050	842 aa		5.19	□□□□□ -1.58
MSH1	YHR120W	CIR2	Q08822	631 aa		5.19	□□□□□ -1.58
MSH1	YHR120W	CET1	O13297	549 aa	Predicted RBP	5.19	□□□□□ -1.58
MSH1	YHR120W	GCD6	P32501	712 aa	Known RBP	5.19	□□□□□ -1.58
MSH1	YHR120W	SWC5	P38326	303 aa		5.19	□□□□□ -1.58
MSH1	YHR120W	ASG1	P40467	964 aa		5.19	□□□□□ -1.58
MSH1	YHR120W	BRO1	P48582	844 aa		5.19	□□□□□ -1.58
MSH1	YHR120W	PEX31	P53203	462 aa		5.19	□□□□□ -1.58
MSH1	YHR120W	TRM112	P53738	135 aa	Predicted RBP	5.19	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 61.5 ms