RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB4	YOR171C	YFR006W	P43590	535 aa		5.6	□□□□□ -1.51
LCB4	YOR171C	PIB1	Q06651	286 aa		5.58	□□□□□ -1.52
LCB4	YOR171C	EDS1	P38073	919 aa		5.58	□□□□□ -1.52
LCB4	YOR171C	PRE3	P38624	215 aa		5.58	□□□□□ -1.52
LCB4	YOR171C	TAF7	Q05021	590 aa		5.57	□□□□□ -1.52
LCB4	YOR171C	LEU3	P08638	886 aa		5.56	□□□□□ -1.52
LCB4	YOR171C	VRP1	P37370	817 aa		5.56	□□□□□ -1.52
LCB4	YOR171C	VPS70	P47161	811 aa		5.56	□□□□□ -1.52
LCB4	YOR171C	IFH1	P39520	1085 aa		5.56	□□□□□ -1.52
LCB4	YOR171C	MIF2	P35201	549 aa		5.55	□□□□□ -1.52
LCB4	YOR171C	SET4	P42948	560 aa		5.54	□□□□□ -1.52
LCB4	YOR171C	NOP53	Q12080	455 aa	Known RBP	5.53	□□□□□ -1.52
LCB4	YOR171C	LEO1	P38439	464 aa		5.51	□□□□□ -1.53
LCB4	YOR171C	CKB1	P43639	278 aa		5.51	□□□□□ -1.53
LCB4	YOR171C	VMA1	P17255	1071 aa	Known RBP	5.5	□□□□□ -1.53
LCB4	YOR171C	PTC3	P34221	468 aa	Known RBP	5.5	□□□□□ -1.53
LCB4	YOR171C	YOL036W	Q08206	761 aa		5.5	□□□□□ -1.53
LCB4	YOR171C	SRC1	Q03707	834 aa		5.49	□□□□□ -1.53
LCB4	YOR171C	YDL129W	Q07555	291 aa		5.46	□□□□□ -1.54
LCB4	YOR171C	SPB4	P25808	606 aa	Predicted RBP	5.45	□□□□□ -1.54
LCB4	YOR171C	SAM3	Q08986	587 aa		5.45	□□□□□ -1.54
LCB4	YOR171C	DSF2	P38213	736 aa		5.43	□□□□□ -1.54
LCB4	YOR171C	PBS2	P08018	668 aa		5.43	□□□□□ -1.54
LCB4	YOR171C	REF2	P42073	533 aa	Predicted RBP	5.41	□□□□□ -1.54
LCB4	YOR171C	GRE2	Q12068	342 aa	Known RBP	5.41	□□□□□ -1.54
LCB4	YOR171C	ATH1	P48016	1211 aa		5.4	□□□□□ -1.55
LCB4	YOR171C	GUT1	P32190	709 aa		5.39	□□□□□ -1.55
LCB4	YOR171C	GYP5	Q12344	894 aa		5.39	□□□□□ -1.55
LCB4	YOR171C	RPN1	P38764	993 aa	Known RBP	5.38	□□□□□ -1.55
LCB4	YOR171C	SOL3	P38858	249 aa		5.36	□□□□□ -1.55
LCB4	YOR171C	UBP14	P38237	781 aa	Known RBP	5.35	□□□□□ -1.55
LCB4	YOR171C	VHR2	P40041	505 aa		5.35	□□□□□ -1.55
LCB4	YOR171C	YGR273C	P53329	174 aa		5.35	□□□□□ -1.55
LCB4	YOR171C	MAM3	Q12296	706 aa		5.35	□□□□□ -1.55
LCB4	YOR171C	IES2	P40154	320 aa		5.34	□□□□□ -1.55
LCB4	YOR171C	YLR326W	Q06170	240 aa	Known RBP	5.34	□□□□□ -1.55
LCB4	YOR171C	MAK21	Q12176	1025 aa	Known RBP	5.34	□□□□□ -1.55
LCB4	YOR171C	DAN4	P47179	1161 aa		5.34	□□□□□ -1.55
LCB4	YOR171C	NST1	P53935	1240 aa		5.34	□□□□□ -1.55
LCB4	YOR171C	YDR090C	Q03193	310 aa		5.34	□□□□□ -1.55
LCB4	YOR171C	COX6	P00427	148 aa		5.33	□□□□□ -1.56
LCB4	YOR171C	ABP1	P15891	592 aa	Known RBP	5.33	□□□□□ -1.56
LCB4	YOR171C	DCW1	P36091	449 aa		5.33	□□□□□ -1.56
LCB4	YOR171C	JIP4	Q03361	876 aa		5.33	□□□□□ -1.56
LCB4	YOR171C	NUP42	P49686	430 aa	Known RBP	5.32	□□□□□ -1.56
LCB4	YOR171C	DIT2	P21595	489 aa		5.32	□□□□□ -1.56
LCB4	YOR171C	YNR021W	P53723	404 aa	Known RBP	5.32	□□□□□ -1.56
LCB4	YOR171C	HTA1	P04911	132 aa	Known RBP	5.3	□□□□□ -1.56
LCB4	YOR171C	HTA2	P04912	132 aa		5.3	□□□□□ -1.56
LCB4	YOR171C	KEX1	P09620	729 aa		5.3	□□□□□ -1.56
LCB4	YOR171C	ILV3	P39522	585 aa	Known RBP	5.3	□□□□□ -1.56
LCB4	YOR171C	ELP4	Q02884	456 aa	Known RBP	5.28	□□□□□ -1.56
LCB4	YOR171C	GLC3	P32775	704 aa		5.28	□□□□□ -1.56
LCB4	YOR171C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	5.28	□□□□□ -1.56	not detected
LCB4	YOR171C	RAD54	P32863	898 aa		5.27	□□□□□ -1.57
LCB4	YOR171C	YPL062W	Q02781	134 aa		5.27	□□□□□ -1.57
LCB4	YOR171C	AI4	P03878	556 aa		5.26	□□□□□ -1.57
LCB4	YOR171C	MPH3	P0CE00	602 aa		5.26	□□□□□ -1.57
LCB4	YOR171C	KIC1	P38692	1080 aa		5.26	□□□□□ -1.57
LCB4	YOR171C	DMA2	P53924	522 aa		5.26	□□□□□ -1.57
LCB4	YOR171C	KIN1	P13185	1064 aa		5.24	□□□□□ -1.57
LCB4	YOR171C	YEL023C	P39992	682 aa		5.24	□□□□□ -1.57
LCB4	YOR171C	AIM7	Q12156	149 aa		5.24	□□□□□ -1.57
LCB4	YOR171C	ORC6	P38826	435 aa		5.22	□□□□□ -1.57
LCB4	YOR171C	PTC4	P38089	393 aa		5.2	□□□□□ -1.58
LCB4	YOR171C	SLI15	P38283	698 aa		5.2	□□□□□ -1.58
LCB4	YOR171C	YDR344C	Q05510	147 aa		5.2	□□□□□ -1.58
LCB4	YOR171C	PSE1	P32337	1089 aa	Known RBP	5.19	□□□□□ -1.58
LCB4	YOR171C	ATF2	P53296	535 aa		5.19	□□□□□ -1.58
LCB4	YOR171C	GAP1	P19145	602 aa	Predicted RBP	5.16	□□□□□ -1.58
LCB4	YOR171C	GUA1	P38625	525 aa	Known RBP	5.16	□□□□□ -1.58
LCB4	YOR171C	CDC73	Q06697	393 aa		5.15	□□□□□ -1.59
LCB4	YOR171C	RGR1	P19263	1082 aa		5.14	□□□□□ -1.59
LCB4	YOR171C	MVP1	P40959	511 aa	Known RBP	5.13	□□□□□ -1.59
LCB4	YOR171C	MID1	P41821	548 aa		5.13	□□□□□ -1.59
LCB4	YOR171C	PML39	Q03760	334 aa		5.12	□□□□□ -1.59
LCB4	YOR171C	CSC1	Q06538	782 aa		5.11	□□□□□ -1.59
LCB4	YOR171C	TEA1	P47988	759 aa		5.11	□□□□□ -1.59
LCB4	YOR171C	MPC54	Q08550	464 aa		5.11	□□□□□ -1.59
LCB4	YOR171C	RPP1B	P10622	106 aa	Known RBP	5.1	□□□□□ -1.59
LCB4	YOR171C	TRK1	P12685	1235 aa		5.09	□□□□□ -1.6
LCB4	YOR171C	CLB5	P30283	435 aa		5.09	□□□□□ -1.6
LCB4	YOR171C	DPL1	Q05567	589 aa		5.09	□□□□□ -1.6
LCB4	YOR171C	YPR109W	Q06104	294 aa		5.09	□□□□□ -1.6
LCB4	YOR171C	TFB4	Q12004	338 aa		5.09	□□□□□ -1.6
LCB4	YOR171C	HPC2	Q01448	625 aa		5.08	□□□□□ -1.6
LCB4	YOR171C	KTR1	P27810	393 aa	Known RBP	5.07	□□□□□ -1.6
LCB4	YOR171C	NIS1	P53939	407 aa		5.07	□□□□□ -1.6
LCB4	YOR171C	CSN12	P47130	423 aa		5.06	□□□□□ -1.6
LCB4	YOR171C	TFB3	Q03290	321 aa		5.06	□□□□□ -1.6
LCB4	YOR171C	PEX29	Q03370	554 aa		5.06	□□□□□ -1.6
LCB4	YOR171C	TYW1	Q08960	810 aa	Known RBP	5.06	□□□□□ -1.6
LCB4	YOR171C	RAS1	P01119	309 aa		5.05	□□□□□ -1.6
LCB4	YOR171C	PEX21	P50091	288 aa		5.05	□□□□□ -1.6
LCB4	YOR171C	TUM1	Q08686	304 aa	Known RBP	5.05	□□□□□ -1.6
LCB4	YOR171C	ISU2	Q12056	156 aa		5.05	□□□□□ -1.6
LCB4	YOR171C	SSA2	P10592	639 aa	Known RBP	5.04	□□□□□ -1.6
LCB4	YOR171C	PKC1	P24583	1151 aa		5.04	□□□□□ -1.6
LCB4	YOR171C	ARH1	P48360	493 aa		5.04	□□□□□ -1.6
LCB4	YOR171C	FPK1	P53739	893 aa		5.04	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 63.1 ms