RNA–Protein interactions for RNA: YOL112W

MSB4, Transcript of GTPase-activating protein of the Ras superfamily, yeast

Gene MSB4, Length 1,479 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSB4	YOL112W	RPO21	P04050	1733 aa	Known RBP	15.26	■□□□□ 0.03
MSB4	YOL112W	NUP159	P40477	1460 aa		15.21	■□□□□ 0.03
MSB4	YOL112W	SNQ2	P32568	1501 aa	Known RBP	15.17	■□□□□ 0.02
MSB4	YOL112W	LTE1	P07866	1435 aa		15.14	■□□□□ 0.01
MSB4	YOL112W	MLP2	P40457	1679 aa		15.11	■□□□□ 0.01
MSB4	YOL112W	VPS15	P22219	1454 aa		15.07	■□□□□ 0
MSB4	YOL112W	SNT2	P53127	1403 aa		15.07	■□□□□ 0
MSB4	YOL112W	ULS1	Q08562	1619 aa		15.06	■□□□□ 0
MSB4	YOL112W	BNI1	P41832	1953 aa		15.04	■□□□□ -0
MSB4	YOL112W	GEA2	P39993	1459 aa	Known RBP	15.03	■□□□□ -0
MSB4	YOL112W	STH1	P32597	1359 aa		15.01	□□□□□ -0.01
MSB4	YOL112W	PDR15	Q04182	1529 aa	Known RBP	15	□□□□□ -0.01
MSB4	YOL112W	SAS10	Q12136	610 aa	Predicted RBP	14.97	□□□□□ -0.01
MSB4	YOL112W	SPO14	P36126	1683 aa		14.95	□□□□□ -0.02
MSB4	YOL112W	IRC20	Q06554	1556 aa		14.88	□□□□□ -0.03
MSB4	YOL112W	PDR12	Q02785	1511 aa		14.87	□□□□□ -0.03
MSB4	YOL112W	ITT1	Q04638	464 aa		14.86	□□□□□ -0.03
MSB4	YOL112W	RTT106	P40161	455 aa		14.83	□□□□□ -0.03
MSB4	YOL112W	GDB1	Q06625	1536 aa		14.82	□□□□□ -0.04
MSB4	YOL112W	MET10	P39692	1035 aa		14.82	□□□□□ -0.04
MSB4	YOL112W	NUP170	P38181	1502 aa		14.82	□□□□□ -0.04
MSB4	YOL112W	DRS2	P39524	1355 aa		14.81	□□□□□ -0.04
MSB4	YOL112W	TAF7	Q05021	590 aa		14.76	□□□□□ -0.05
MSB4	YOL112W	TY3B-G	Q99315	1547 aa		14.73	□□□□□ -0.05
MSB4	YOL112W	GEA1	P47102	1408 aa	Predicted RBP	14.73	□□□□□ -0.05
MSB4	YOL112W	YBT1	P32386	1661 aa		14.73	□□□□□ -0.05
MSB4	YOL112W	IFH1	P39520	1085 aa		14.72	□□□□□ -0.05
MSB4	YOL112W	MMS1	Q06211	1407 aa		14.72	□□□□□ -0.05
MSB4	YOL112W	NUP157	P40064	1391 aa	Known RBP	14.71	□□□□□ -0.05
MSB4	YOL112W	PDR10	P51533	1564 aa		14.7	□□□□□ -0.06
MSB4	YOL112W	DOP1	Q03921	1698 aa		14.69	□□□□□ -0.06
MSB4	YOL112W	IQG1	Q12280	1495 aa		14.68	□□□□□ -0.06
MSB4	YOL112W	DNF2	Q12675	1612 aa		14.62	□□□□□ -0.07
MSB4	YOL112W	BUD3	P25558	1636 aa		14.58	□□□□□ -0.08
MSB4	YOL112W	CAT8	P39113	1433 aa		14.58	□□□□□ -0.08
MSB4	YOL112W	ARO1	P08566	1588 aa	Known RBP	14.56	□□□□□ -0.08
MSB4	YOL112W	TRM3	Q07527	1436 aa		14.55	□□□□□ -0.08
MSB4	YOL112W	CHC1	P22137	1653 aa	Known RBP	14.53	□□□□□ -0.08
MSB4	YOL112W	SEC7	P11075	2009 aa	Known RBP	14.47	□□□□□ -0.09
MSB4	YOL112W	ABP1	P15891	592 aa	Known RBP	14.45	□□□□□ -0.1
MSB4	YOL112W	YSP2	Q06681	1438 aa		14.42	□□□□□ -0.1
MSB4	YOL112W	CKB1	P43639	278 aa		14.38	□□□□□ -0.11
MSB4	YOL112W	MIF2	P35201	549 aa		14.38	□□□□□ -0.11
MSB4	YOL112W	YOR093C	Q12275	1648 aa		14.33	□□□□□ -0.12
MSB4	YOL112W	SRB8	P25648	1427 aa		14.29	□□□□□ -0.12
MSB4	YOL112W	BNR1	P40450	1375 aa		14.29	□□□□□ -0.12
MSB4	YOL112W	IKI3	Q06706	1349 aa	Known RBP	14.22	□□□□□ -0.13
MSB4	YOL112W	DNF3	Q12674	1656 aa		14.19	□□□□□ -0.14
MSB4	YOL112W	SSM4	P40318	1319 aa		14.14	□□□□□ -0.15
MSB4	YOL112W	BUD21	Q08492	214 aa	Predicted RBP	14.08	□□□□□ -0.16
MSB4	YOL112W	NUP188	P52593	1655 aa	Known RBP	14.08	□□□□□ -0.16
MSB4	YOL112W	VMR1	P38735	1592 aa		14.07	□□□□□ -0.16
MSB4	YOL112W	YAP3	P38749	330 aa		14.05	□□□□□ -0.16
MSB4	YOL112W	GCN2	P15442	1659 aa		13.99	□□□□□ -0.17
MSB4	YOL112W	YFR006W	P43590	535 aa		13.97	□□□□□ -0.17
MSB4	YOL112W	IML1	P47170	1584 aa		13.95	□□□□□ -0.18
MSB4	YOL112W	PDR5	P33302	1511 aa	Known RBP	13.93	□□□□□ -0.18
MSB4	YOL112W	URN1	Q06525	465 aa	Known RBP	13.93	□□□□□ -0.18
MSB4	YOL112W	USO1	P25386	1790 aa		13.92	□□□□□ -0.18
MSB4	YOL112W	IPL1	P38991	367 aa		13.89	□□□□□ -0.19
MSB4	YOL112W	TYS1	P36421	394 aa	Known RBP	13.87	□□□□□ -0.19
MSB4	YOL112W	MAK10	Q02197	733 aa		13.85	□□□□□ -0.19
MSB4	YOL112W	HAP1	P0CE41	1502 aa		13.85	□□□□□ -0.19
MSB4	YOL112W	PDR11	P40550	1411 aa		13.84	□□□□□ -0.19
MSB4	YOL112W	TY1B-NL2	Q99337	1749 aa	Known RBP	13.7	□□□□□ -0.22
MSB4	YOL112W	RAV1	P47104	1357 aa		13.63	□□□□□ -0.23
MSB4	YOL112W	NUP192	P47054	1683 aa		13.63	□□□□□ -0.23
MSB4	YOL112W	PAF1	P38351	445 aa		13.58	□□□□□ -0.24
MSB4	YOL112W	KRE5	P22023	1365 aa		13.55	□□□□□ -0.24
MSB4	YOL112W	BFR2	Q06631	534 aa	Known RBP	13.55	□□□□□ -0.24
MSB4	YOL112W	BCK1	Q01389	1478 aa		13.54	□□□□□ -0.24
MSB4	YOL112W	THI12	P42883	340 aa		13.53	□□□□□ -0.24
MSB4	YOL112W	THI5	P43534	340 aa		13.53	□□□□□ -0.24
MSB4	YOL112W	THI11	P47183	340 aa		13.53	□□□□□ -0.24
MSB4	YOL112W	THI13	Q07748	340 aa		13.53	□□□□□ -0.24
MSB4	YOL112W	RTC1	Q08281	1341 aa		13.52	□□□□□ -0.24
MSB4	YOL112W	NOP7	P53261	605 aa	Known RBP	13.51	□□□□□ -0.25
MSB4	YOL112W	YMR196W	Q04336	1088 aa		13.5	□□□□□ -0.25
MSB4	YOL112W	CFT1	Q06632	1357 aa	Known RBP	13.5	□□□□□ -0.25
MSB4	YOL112W	RAD9	P14737	1309 aa		13.47	□□□□□ -0.25
MSB4	YOL112W	RIA1	P53893	1110 aa		13.46	□□□□□ -0.25
MSB4	YOL112W	MRX12	P47084	519 aa		13.43	□□□□□ -0.26
MSB4	YOL112W	CAB1	Q04430	367 aa		13.42	□□□□□ -0.26
MSB4	YOL112W	ALD4	P46367	519 aa	Known RBP	13.41	□□□□□ -0.26
MSB4	YOL112W	YNR029C	P53729	429 aa	Known RBP	13.37	□□□□□ -0.27
MSB4	YOL112W	TAF5	P38129	798 aa		13.33	□□□□□ -0.28
MSB4	YOL112W	TY3B-I	Q7LHG5	1498 aa	Known RBP	13.31	□□□□□ -0.28
MSB4	YOL112W	ESL2	P36168	1195 aa		13.29	□□□□□ -0.28
MSB4	YOL112W	TAF8	Q03750	510 aa		13.26	□□□□□ -0.29
MSB4	YOL112W	TY4B-H	P0C2J7	1802 aa		13.18	□□□□□ -0.3
MSB4	YOL112W	TY4B-J	P47024	1803 aa		13.18	□□□□□ -0.3
MSB4	YOL112W	PTP3	P40048	928 aa		13.18	□□□□□ -0.3
MSB4	YOL112W	NAP1	P25293	417 aa	Known RBP	13.17	□□□□□ -0.3
MSB4	YOL112W	KIP3	P53086	805 aa	Known RBP	13.16	□□□□□ -0.3
MSB4	YOL112W	RCM1	P53972	490 aa		13.16	□□□□□ -0.3
MSB4	YOL112W	SPE2	P21182	396 aa		13.14	□□□□□ -0.31
MSB4	YOL112W	YLR419W	Q06698	1435 aa	Known RBP	13.13	□□□□□ -0.31
MSB4	YOL112W	ORC1	P54784	914 aa	Predicted RBP	13.13	□□□□□ -0.31
MSB4	YOL112W	RRP5	Q05022	1729 aa	Known RBP	13.13	□□□□□ -0.31
MSB4	YOL112W	CPS1	P27614	576 aa		13.12	□□□□□ -0.31

Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms