RNA–Protein interactions for RNA: YNL079C

TPM1, Transcript of Major isoform of tropomyosin, yeast

Gene TPM1, Length 600 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TPM1	YNL079C	VNX1	P42839	908 aa		7.02	□□□□□ -1.29
TPM1	YNL079C	YGR273C	P53329	174 aa		7.01	□□□□□ -1.29
TPM1	YNL079C	HTA1	P04911	132 aa	Known RBP	7	□□□□□ -1.29
TPM1	YNL079C	HTA2	P04912	132 aa		7	□□□□□ -1.29
TPM1	YNL079C	UBP14	P38237	781 aa	Known RBP	7	□□□□□ -1.29
TPM1	YNL079C	NST1	P53935	1240 aa		6.99	□□□□□ -1.29
TPM1	YNL079C	EAP1	P36041	632 aa	Known RBP	6.98	□□□□□ -1.29
TPM1	YNL079C	VHR2	P40041	505 aa		6.98	□□□□□ -1.29
TPM1	YNL079C	MAK21	Q12176	1025 aa	Known RBP	6.98	□□□□□ -1.29
TPM1	YNL079C	COX6	P00427	148 aa		6.97	□□□□□ -1.29
TPM1	YNL079C	YLR326W	Q06170	240 aa	Known RBP	6.97	□□□□□ -1.29
TPM1	YNL079C	YDR090C	Q03193	310 aa		6.96	□□□□□ -1.3
TPM1	YNL079C	MAM3	Q12296	706 aa		6.96	□□□□□ -1.3
TPM1	YNL079C	TRP5	P00931	707 aa	Known RBP	6.95	□□□□□ -1.3
TPM1	YNL079C	TIF11	P38912	153 aa	Known RBP	6.95	□□□□□ -1.3
TPM1	YNL079C	SPP1	Q03012	353 aa		6.95	□□□□□ -1.3
TPM1	YNL079C	KEX1	P09620	729 aa		6.94	□□□□□ -1.3
TPM1	YNL079C	RPN1	P38764	993 aa	Known RBP	6.94	□□□□□ -1.3
TPM1	YNL079C	ULI1	P43604	169 aa		6.94	□□□□□ -1.3
TPM1	YNL079C	YEL023C	P39992	682 aa		6.93	□□□□□ -1.3
TPM1	YNL079C	MPH3	P0CE00	602 aa		6.92	□□□□□ -1.3
TPM1	YNL079C	IES2	P40154	320 aa		6.92	□□□□□ -1.3
TPM1	YNL079C	AI4	P03878	556 aa		6.91	□□□□□ -1.3
TPM1	YNL079C	IOC2	Q12072	812 aa		6.91	□□□□□ -1.3
TPM1	YNL079C	BUD31	P25337	157 aa	Predicted RBP	6.9	□□□□□ -1.3
TPM1	YNL079C	RAD54	P32863	898 aa		6.9	□□□□□ -1.3
TPM1	YNL079C	PTC4	P38089	393 aa		6.9	□□□□□ -1.3
TPM1	YNL079C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	6.9	□□□□□ -1.3	not detected
TPM1	YNL079C	ILV3	P39522	585 aa	Known RBP	6.9	□□□□□ -1.3
TPM1	YNL079C	NUP42	P49686	430 aa	Known RBP	6.9	□□□□□ -1.3
TPM1	YNL079C	JIP4	Q03361	876 aa		6.89	□□□□□ -1.31
TPM1	YNL079C	DIT2	P21595	489 aa		6.88	□□□□□ -1.31
TPM1	YNL079C	KIC1	P38692	1080 aa		6.88	□□□□□ -1.31
TPM1	YNL079C	DAN4	P47179	1161 aa		6.88	□□□□□ -1.31
TPM1	YNL079C	YNR021W	P53723	404 aa	Known RBP	6.88	□□□□□ -1.31
TPM1	YNL079C	YNL035C	P53962	389 aa	Known RBP	6.84	□□□□□ -1.31
TPM1	YNL079C	LDB19	Q12502	818 aa		6.83	□□□□□ -1.32
TPM1	YNL079C	GLC3	P32775	704 aa		6.82	□□□□□ -1.32
TPM1	YNL079C	SLI15	P38283	698 aa		6.82	□□□□□ -1.32
TPM1	YNL079C	RTG1	P32607	177 aa		6.81	□□□□□ -1.32
TPM1	YNL079C	AIM7	Q12156	149 aa		6.8	□□□□□ -1.32
TPM1	YNL079C	SEC61	P32915	480 aa		6.79	□□□□□ -1.32
TPM1	YNL079C	ORC6	P38826	435 aa		6.79	□□□□□ -1.32
TPM1	YNL079C	PSE1	P32337	1089 aa	Known RBP	6.78	□□□□□ -1.32
TPM1	YNL079C	KIN1	P13185	1064 aa		6.77	□□□□□ -1.33
TPM1	YNL079C	PML39	Q03760	334 aa		6.77	□□□□□ -1.33
TPM1	YNL079C	MID1	P41821	548 aa		6.76	□□□□□ -1.33
TPM1	YNL079C	ATF2	P53296	535 aa		6.76	□□□□□ -1.33
TPM1	YNL079C	NCR1	Q12200	1170 aa		6.75	□□□□□ -1.33
TPM1	YNL079C	GAP1	P19145	602 aa	Predicted RBP	6.74	□□□□□ -1.33
TPM1	YNL079C	CDC73	Q06697	393 aa		6.74	□□□□□ -1.33
TPM1	YNL079C	RPP1B	P10622	106 aa	Known RBP	6.73	□□□□□ -1.33
TPM1	YNL079C	RGR1	P19263	1082 aa		6.73	□□□□□ -1.33
TPM1	YNL079C	FKH1	P40466	484 aa		6.73	□□□□□ -1.33
TPM1	YNL079C	TFG1	P41895	735 aa	Predicted RBP	6.73	□□□□□ -1.33
TPM1	YNL079C	MVP1	P40959	511 aa	Known RBP	6.72	□□□□□ -1.33
TPM1	YNL079C	CSC1	Q06538	782 aa		6.72	□□□□□ -1.33
TPM1	YNL079C	YDL129W	Q07555	291 aa		6.71	□□□□□ -1.34
TPM1	YNL079C	DPL1	Q05567	589 aa		6.7	□□□□□ -1.34
TPM1	YNL079C	MPC54	Q08550	464 aa		6.7	□□□□□ -1.34
TPM1	YNL079C	AIR2	Q12476	344 aa	Known RBP	6.69	□□□□□ -1.34
TPM1	YNL079C	PEX29	Q03370	554 aa		6.68	□□□□□ -1.34
TPM1	YNL079C	TEA1	P47988	759 aa		6.67	□□□□□ -1.34
TPM1	YNL079C	TFB4	Q12004	338 aa		6.67	□□□□□ -1.34
TPM1	YNL079C	CLB5	P30283	435 aa		6.66	□□□□□ -1.34
TPM1	YNL079C	PEX21	P50091	288 aa		6.66	□□□□□ -1.34
TPM1	YNL079C	DMA2	P53924	522 aa		6.66	□□□□□ -1.34
TPM1	YNL079C	TAF7	Q05021	590 aa		6.66	□□□□□ -1.34
TPM1	YNL079C	YPR109W	Q06104	294 aa		6.66	□□□□□ -1.34
TPM1	YNL079C	NMA111	P53920	997 aa		6.65	□□□□□ -1.34
TPM1	YNL079C	ISU2	Q12056	156 aa		6.65	□□□□□ -1.34
TPM1	YNL079C	SIS1	P25294	352 aa	Known RBP	6.64	□□□□□ -1.35
TPM1	YNL079C	SAP30	P38429	201 aa		6.64	□□□□□ -1.35
TPM1	YNL079C	GUA1	P38625	525 aa	Known RBP	6.64	□□□□□ -1.35
TPM1	YNL079C	TUM1	Q08686	304 aa	Known RBP	6.64	□□□□□ -1.35
TPM1	YNL079C	ARH1	P48360	493 aa		6.6	□□□□□ -1.35
TPM1	YNL079C	YDR344C	Q05510	147 aa		6.6	□□□□□ -1.35
TPM1	YNL079C	YRR1	Q12172	810 aa		6.6	□□□□□ -1.35
TPM1	YNL079C	NIS1	P53939	407 aa		6.59	□□□□□ -1.35
TPM1	YNL079C	HAP5	Q02516	242 aa		6.59	□□□□□ -1.35
TPM1	YNL079C	CSN12	P47130	423 aa		6.58	□□□□□ -1.36
TPM1	YNL079C	HPC2	Q01448	625 aa		6.57	□□□□□ -1.36
TPM1	YNL079C	BMT6	Q12291	365 aa		6.57	□□□□□ -1.36
TPM1	YNL079C	YJL171C	P46992	396 aa		6.56	□□□□□ -1.36
TPM1	YNL079C	FPK1	P53739	893 aa		6.56	□□□□□ -1.36
TPM1	YNL079C	SSA2	P10592	639 aa	Known RBP	6.55	□□□□□ -1.36
TPM1	YNL079C	SIT4	P20604	311 aa		6.55	□□□□□ -1.36
TPM1	YNL079C	KTR1	P27810	393 aa	Known RBP	6.55	□□□□□ -1.36
TPM1	YNL079C	ELP4	Q02884	456 aa	Known RBP	6.55	□□□□□ -1.36
TPM1	YNL079C	PDR1	P12383	1068 aa		6.54	□□□□□ -1.36
TPM1	YNL079C	HST2	P53686	357 aa		6.54	□□□□□ -1.36
TPM1	YNL079C	YMR196W	Q04336	1088 aa		6.54	□□□□□ -1.36
TPM1	YNL079C	TYW1	Q08960	810 aa	Known RBP	6.54	□□□□□ -1.36
TPM1	YNL079C	BNI4	P53858	892 aa		6.53	□□□□□ -1.36
TPM1	YNL079C	GLN1	P32288	370 aa	Known RBP	6.52	□□□□□ -1.37
TPM1	YNL079C	NUD1	P32336	851 aa		6.52	□□□□□ -1.37
TPM1	YNL079C	HGH1	P48362	394 aa	Known RBP	6.52	□□□□□ -1.37
TPM1	YNL079C	TFB3	Q03290	321 aa		6.52	□□□□□ -1.37
TPM1	YNL079C	SCJ1	P25303	377 aa		6.51	□□□□□ -1.37
TPM1	YNL079C	SPT23	P35210	1082 aa		6.51	□□□□□ -1.37

Retrieved 100 of 5,963 RNA–protein pairs in 50.5 ms