RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W VHR2P40041 505 aa9.4□□□□□ -0.91
PRP40YKL012W YAP5P40574 245 aa9.4□□□□□ -0.91
PRP40YKL012W VMA1P17255 1071 aaKnown RBP9.39□□□□□ -0.91
PRP40YKL012W TIF4632P39936 914 aaKnown RBP9.39□□□□□ -0.91
PRP40YKL012W PIB1Q06651 286 aa9.38□□□□□ -0.91
PRP40YKL012W ATH1P48016 1211 aa9.36□□□□□ -0.91
PRP40YKL012W GUT1P32190 709 aa9.35□□□□□ -0.91
PRP40YKL012W YLR326WQ06170 240 aaKnown RBP9.35□□□□□ -0.91
PRP40YKL012W GRE2Q12068 342 aaKnown RBP9.35□□□□□ -0.91
PRP40YKL012W TFB3Q03290 321 aa9.32□□□□□ -0.92
PRP40YKL012W TGL3P40308 642 aa9.32□□□□□ -0.92
PRP40YKL012W KIC1P38692 1080 aa9.31□□□□□ -0.92
PRP40YKL012W YGR273CP53329 174 aa9.29□□□□□ -0.92
PRP40YKL012W PSE1P32337 1089 aaKnown RBP9.29□□□□□ -0.92
PRP40YKL012W SAM3Q08986 587 aa9.28□□□□□ -0.92
PRP40YKL012W BRL1P38770 471 aa9.27□□□□□ -0.92
PRP40YKL012W SSA2P10592 639 aaKnown RBP9.26□□□□□ -0.93
PRP40YKL012W RAD54P32863 898 aa9.25□□□□□ -0.93
PRP40YKL012W KEX1P09620 729 aa9.24□□□□□ -0.93
PRP40YKL012W PCS60P38137 543 aaKnown RBP RIP-Chip data9.24□□□□□ -0.93 RIP-Chip
PRP40YKL012W SOL3P38858 249 aa9.23□□□□□ -0.93
PRP40YKL012W CSN12P47130 423 aa9.23□□□□□ -0.93
PRP40YKL012W GYP5Q12344 894 aa9.22□□□□□ -0.93
PRP40YKL012W PKC1P24583 1151 aa9.21□□□□□ -0.94
PRP40YKL012W ORC6P38826 435 aa9.18□□□□□ -0.94
PRP40YKL012W TEA1P47988 759 aa9.17□□□□□ -0.94
PRP40YKL012W MST1P07236 462 aa9.15□□□□□ -0.94
PRP40YKL012W NST1P53935 1240 aa9.14□□□□□ -0.95
PRP40YKL012W BIM1P40013 344 aa9.13□□□□□ -0.95
PRP40YKL012W YJL007CP47080 104 aa9.12□□□□□ -0.95
PRP40YKL012W KTR1P27810 393 aaKnown RBP9.12□□□□□ -0.95
PRP40YKL012W GLN1P32288 370 aaKnown RBP9.12□□□□□ -0.95
PRP40YKL012W RGR1P19263 1082 aa9.11□□□□□ -0.95
PRP40YKL012W DCW1P36091 449 aa9.1□□□□□ -0.95
PRP40YKL012W GTT3P39996 337 aa9.09□□□□□ -0.95
PRP40YKL012W SSA1P10591 642 aaKnown RBP9.09□□□□□ -0.95
PRP40YKL012W CLB5P30283 435 aa9.09□□□□□ -0.95
PRP40YKL012W ATG32P40458 529 aa9.09□□□□□ -0.95
PRP40YKL012W SUB2Q07478 446 aaKnown RBP9.09□□□□□ -0.95
PRP40YKL012W AI4P03878 556 aa9.07□□□□□ -0.96
PRP40YKL012W MPH3P0CE00 602 aa9.07□□□□□ -0.96
PRP40YKL012W MVP1P40959 511 aaKnown RBP9.07□□□□□ -0.96
PRP40YKL012W YOL036WQ08206 761 aa9.07□□□□□ -0.96
PRP40YKL012W TYW1Q08960 810 aaKnown RBP9.07□□□□□ -0.96
PRP40YKL012W HTA1P04911 132 aaKnown RBP9.06□□□□□ -0.96
PRP40YKL012W HTA2P04912 132 aa9.06□□□□□ -0.96
PRP40YKL012W GEF1P37020 779 aa9.04□□□□□ -0.96
PRP40YKL012W GAP1P19145 602 aaPredicted RBP9.04□□□□□ -0.96
PRP40YKL012W ILV3P39522 585 aaKnown RBP9.04□□□□□ -0.96
PRP40YKL012W SET4P42948 560 aa9.03□□□□□ -0.96
PRP40YKL012W NIS1P53939 407 aa9.02□□□□□ -0.97
PRP40YKL012W TIF1P10081 395 aaKnown RBP9.01□□□□□ -0.97
PRP40YKL012W YBL036CP38197 257 aa9.01□□□□□ -0.97
PRP40YKL012W RPL34BP40525 121 aaKnown RBP9.01□□□□□ -0.97
PRP40YKL012W HST2P53686 357 aa9.01□□□□□ -0.97
PRP40YKL012W YML020WQ03722 664 aa9.01□□□□□ -0.97
PRP40YKL012W CSC1Q06538 782 aa9.01□□□□□ -0.97
PRP40YKL012W SSA4P22202 642 aaKnown RBP9□□□□□ -0.97
PRP40YKL012W FPK1P53739 893 aa9□□□□□ -0.97
PRP40YKL012W SLI15P38283 698 aa8.99□□□□□ -0.97
PRP40YKL012W YMR196WQ04336 1088 aa8.99□□□□□ -0.97
PRP40YKL012W MSB4Q12317 492 aa8.99□□□□□ -0.97
PRP40YKL012W RPP1BP10622 106 aaKnown RBP8.98□□□□□ -0.97
PRP40YKL012W SLX8P40072 274 aa8.98□□□□□ -0.97
PRP40YKL012W DAN4P47179 1161 aa8.98□□□□□ -0.97
PRP40YKL012W YPR109WQ06104 294 aa8.97□□□□□ -0.97
PRP40YKL012W ERG12P07277 443 aa8.96□□□□□ -0.97
PRP40YKL012W BIO2P32451 375 aa8.96□□□□□ -0.97
PRP40YKL012W NOP8Q08287 484 aaPredicted RBP8.96□□□□□ -0.97
PRP40YKL012W MMP1Q12372 583 aa8.96□□□□□ -0.97
PRP40YKL012W CSE4P36012 229 aa8.96□□□□□ -0.98
PRP40YKL012W YEL023CP39992 682 aa8.95□□□□□ -0.98
PRP40YKL012W RAD59Q12223 238 aa8.95□□□□□ -0.98
PRP40YKL012W PKH3Q03306 898 aaPredicted RBP8.94□□□□□ -0.98
PRP40YKL012W TFB4Q12004 338 aa8.94□□□□□ -0.98
PRP40YKL012W ESS1P22696 170 aa8.93□□□□□ -0.98
PRP40YKL012W SIT4P20604 311 aa8.92□□□□□ -0.98
PRP40YKL012W SCJ1P25303 377 aa8.92□□□□□ -0.98
PRP40YKL012W RTG2P32608 588 aaKnown RBP8.92□□□□□ -0.98
PRP40YKL012W YPR204WQ08995 1032 aa8.91□□□□□ -0.98
PRP40YKL012W TTI1P36097 1038 aa8.91□□□□□ -0.98
PRP40YKL012W CDC73Q06697 393 aa8.91□□□□□ -0.98
PRP40YKL012W CPS1P27614 576 aa8.9□□□□□ -0.98
PRP40YKL012W YNL108CP53929 270 aa8.9□□□□□ -0.98
PRP40YKL012W YJU3P28321 313 aa8.89□□□□□ -0.99
PRP40YKL012W PTC4P38089 393 aa8.89□□□□□ -0.99
PRP40YKL012W SUP45P12385 437 aaKnown RBP8.87□□□□□ -0.99
PRP40YKL012W PEX21P50091 288 aa8.87□□□□□ -0.99
PRP40YKL012W EAP1P36041 632 aaKnown RBP8.86□□□□□ -0.99
PRP40YKL012W ARG8P18544 423 aa8.86□□□□□ -0.99
PRP40YKL012W TUM1Q08686 304 aaKnown RBP8.86□□□□□ -0.99
PRP40YKL012W NOB1Q08444 459 aaKnown RBP8.84□□□□□ -1
PRP40YKL012W SPT5P27692 1063 aaKnown RBP8.83□□□□□ -1
PRP40YKL012W RSC30P38781 883 aa8.83□□□□□ -1
PRP40YKL012W WSC3Q12215 556 aa8.83□□□□□ -1
PRP40YKL012W TRP5P00931 707 aaKnown RBP8.82□□□□□ -1
PRP40YKL012W RPL34AP87262 121 aaPredicted RBP8.82□□□□□ -1
PRP40YKL012W JIP4Q03361 876 aa8.82□□□□□ -1
PRP40YKL012W ENO2P00925 437 aaKnown RBP8.8□□□□□ -1
PRP40YKL012W MAK16P10962 306 aaPredicted RBP8.8□□□□□ -1
Retrieved 100 of 5,963 RNA–protein pairs in 37.5 ms