RNA–Protein interactions for RNA: YJR005W

APL1, Transcript of Beta-adaptin, yeast

Gene APL1, Length 2,103 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
APL1	YJR005W	RTG3	P38165	486 aa		3.7	□□□□□ -1.82
APL1	YJR005W	STS1	P38637	319 aa		3.7	□□□□□ -1.82
APL1	YJR005W	DBP1	P24784	617 aa	Known RBP	3.69	□□□□□ -1.82
APL1	YJR005W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	3.68	□□□□□ -1.82	not detected
APL1	YJR005W	VMA1	P17255	1071 aa	Known RBP	3.64	□□□□□ -1.83
APL1	YJR005W	YDR344C	Q05510	147 aa		3.64	□□□□□ -1.83
APL1	YJR005W	TRK1	P12685	1235 aa		3.63	□□□□□ -1.83
APL1	YJR005W	PTC4	P38089	393 aa		3.61	□□□□□ -1.83
APL1	YJR005W	SAM3	Q08986	587 aa		3.61	□□□□□ -1.83
APL1	YJR005W	RAM2	P29703	316 aa		3.61	□□□□□ -1.83
APL1	YJR005W	ABP1	P15891	592 aa	Known RBP	3.6	□□□□□ -1.83
APL1	YJR005W	RAS1	P01119	309 aa		3.58	□□□□□ -1.84
APL1	YJR005W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	3.56	□□□□□ -1.84	not detected
APL1	YJR005W	MAK11	P20484	414 aa	Known RBP	3.56	□□□□□ -1.84
APL1	YJR005W	EDS1	P38073	919 aa		3.56	□□□□□ -1.84
APL1	YJR005W	ARH1	P48360	493 aa		3.56	□□□□□ -1.84
APL1	YJR005W	HTA1	P04911	132 aa	Known RBP	3.55	□□□□□ -1.84
APL1	YJR005W	HTA2	P04912	132 aa		3.55	□□□□□ -1.84
APL1	YJR005W	MIF2	P35201	549 aa		3.55	□□□□□ -1.84
APL1	YJR005W	YEL023C	P39992	682 aa		3.55	□□□□□ -1.84
APL1	YJR005W	GYP5	Q12344	894 aa		3.55	□□□□□ -1.84
APL1	YJR005W	SPT23	P35210	1082 aa		3.55	□□□□□ -1.84
APL1	YJR005W	DCW1	P36091	449 aa		3.54	□□□□□ -1.84
APL1	YJR005W	COQ8	P27697	501 aa		3.52	□□□□□ -1.85
APL1	YJR005W	PML39	Q03760	334 aa		3.52	□□□□□ -1.85
APL1	YJR005W	PTC3	P34221	468 aa	Known RBP	3.52	□□□□□ -1.85
APL1	YJR005W	GRE2	Q12068	342 aa	Known RBP	3.5	□□□□□ -1.85
APL1	YJR005W	GAR1	P28007	205 aa	Known RBP	3.5	□□□□□ -1.85
APL1	YJR005W	PEX29	Q03370	554 aa		3.49	□□□□□ -1.85
APL1	YJR005W	ATH1	P48016	1211 aa		3.48	□□□□□ -1.85
APL1	YJR005W	SOL3	P38858	249 aa		3.47	□□□□□ -1.85
APL1	YJR005W	GUT1	P32190	709 aa		3.47	□□□□□ -1.85
APL1	YJR005W	NST1	P53935	1240 aa		3.47	□□□□□ -1.85
APL1	YJR005W	YML082W	Q04533	649 aa	Known RBP	3.44	□□□□□ -1.86
APL1	YJR005W	ILV3	P39522	585 aa	Known RBP	3.44	□□□□□ -1.86
APL1	YJR005W	MID1	P41821	548 aa		3.43	□□□□□ -1.86
APL1	YJR005W	MTC5	Q03897	1148 aa		3.43	□□□□□ -1.86
APL1	YJR005W	AMS1	P22855	1083 aa		3.42	□□□□□ -1.86
APL1	YJR005W	SET1	P38827	1080 aa	Known RBP	3.42	□□□□□ -1.86
APL1	YJR005W	PTC2	P39966	464 aa	Known RBP	3.41	□□□□□ -1.86
APL1	YJR005W	YGR273C	P53329	174 aa		3.41	□□□□□ -1.86
APL1	YJR005W	MPH3	P0CE00	602 aa		3.4	□□□□□ -1.87
APL1	YJR005W	BNI4	P53858	892 aa		3.4	□□□□□ -1.87
APL1	YJR005W	AI4	P03878	556 aa		3.39	□□□□□ -1.87
APL1	YJR005W	NOP53	Q12080	455 aa	Known RBP	3.39	□□□□□ -1.87
APL1	YJR005W	HAP5	Q02516	242 aa		3.38	□□□□□ -1.87
APL1	YJR005W	SLI15	P38283	698 aa		3.36	□□□□□ -1.87
APL1	YJR005W	BRE2	P43132	505 aa		3.36	□□□□□ -1.87
APL1	YJR005W	GCR2	Q01722	534 aa		3.36	□□□□□ -1.87
APL1	YJR005W	VHR2	P40041	505 aa		3.35	□□□□□ -1.87
APL1	YJR005W	KEX1	P09620	729 aa		3.35	□□□□□ -1.87
APL1	YJR005W	UBP14	P38237	781 aa	Known RBP	3.34	□□□□□ -1.87
APL1	YJR005W	YLR326W	Q06170	240 aa	Known RBP	3.34	□□□□□ -1.87
APL1	YJR005W	MPC54	Q08550	464 aa		3.34	□□□□□ -1.87
APL1	YJR005W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	3.32	□□□□□ -1.88	not detected
APL1	YJR005W	CDC73	Q06697	393 aa		3.31	□□□□□ -1.88
APL1	YJR005W	NMA111	P53920	997 aa		3.31	□□□□□ -1.88
APL1	YJR005W	YDR090C	Q03193	310 aa		3.31	□□□□□ -1.88
APL1	YJR005W	YPR148C	Q06523	435 aa		3.31	□□□□□ -1.88
APL1	YJR005W	DPL1	Q05567	589 aa		3.3	□□□□□ -1.88
APL1	YJR005W	VPS70	P47161	811 aa		3.29	□□□□□ -1.88
APL1	YJR005W	DMA1	P38823	416 aa		3.29	□□□□□ -1.88
APL1	YJR005W	RAD54	P32863	898 aa		3.28	□□□□□ -1.88
APL1	YJR005W	YPR015C	Q12531	247 aa		3.28	□□□□□ -1.89
APL1	YJR005W	IFH1	P39520	1085 aa		3.27	□□□□□ -1.89
APL1	YJR005W	PDR1	P12383	1068 aa		3.26	□□□□□ -1.89
APL1	YJR005W	RAM1	P22007	431 aa		3.26	□□□□□ -1.89
APL1	YJR005W	REF2	P42073	533 aa	Predicted RBP	3.26	□□□□□ -1.89
APL1	YJR005W	GYP1	Q08484	637 aa		3.26	□□□□□ -1.89
APL1	YJR005W	ISU2	Q12056	156 aa		3.25	□□□□□ -1.89
APL1	YJR005W	YEL077C	Q3E7X8	1277 aa		3.25	□□□□□ -1.89
APL1	YJR005W	KIC1	P38692	1080 aa		3.23	□□□□□ -1.89
APL1	YJR005W	GAP1	P19145	602 aa	Predicted RBP	3.22	□□□□□ -1.89
APL1	YJR005W	MET22	P32179	357 aa		3.22	□□□□□ -1.89
APL1	YJR005W	ENV9	Q08651	330 aa		3.22	□□□□□ -1.89
APL1	YJR005W	ORC6	P38826	435 aa		3.22	□□□□□ -1.89
APL1	YJR005W	COX6	P00427	148 aa		3.21	□□□□□ -1.9
APL1	YJR005W	YRR1	Q12172	810 aa		3.21	□□□□□ -1.9
APL1	YJR005W	TUM1	Q08686	304 aa	Known RBP	3.2	□□□□□ -1.9
APL1	YJR005W	SAS10	Q12136	610 aa	Predicted RBP	3.2	□□□□□ -1.9
APL1	YJR005W	PBS2	P08018	668 aa		3.19	□□□□□ -1.9
APL1	YJR005W	SDH2	P21801	266 aa		3.19	□□□□□ -1.9
APL1	YJR005W	STR2	P47164	639 aa		3.19	□□□□□ -1.9
APL1	YJR005W	MVP1	P40959	511 aa	Known RBP	3.18	□□□□□ -1.9
APL1	YJR005W	PEX21	P50091	288 aa		3.18	□□□□□ -1.9
APL1	YJR005W	SAS4	Q04003	481 aa		3.18	□□□□□ -1.9
APL1	YJR005W	RPP1B	P10622	106 aa	Known RBP	3.17	□□□□□ -1.9
APL1	YJR005W	ISM1	P48526	1002 aa		3.17	□□□□□ -1.9
APL1	YJR005W	CSC1	Q06538	782 aa		3.17	□□□□□ -1.9
APL1	YJR005W	BUD20	Q08004	166 aa	Predicted RBP	3.17	□□□□□ -1.9
APL1	YJR005W	MAK21	Q12176	1025 aa	Known RBP	3.17	□□□□□ -1.9
APL1	YJR005W	RGR1	P19263	1082 aa		3.17	□□□□□ -1.9
APL1	YJR005W	NUD1	P32336	851 aa		3.17	□□□□□ -1.9
APL1	YJR005W	CKB1	P43639	278 aa		3.16	□□□□□ -1.9
APL1	YJR005W	TFB4	Q12004	338 aa		3.16	□□□□□ -1.9
APL1	YJR005W	TY1A-DR4	O74302	440 aa		3.15	□□□□□ -1.91
APL1	YJR005W	TY1A-H	P0C2I4	478 aa	Known RBP	3.15	□□□□□ -1.91
APL1	YJR005W	TY1A-A	P0CX57	440 aa		3.15	□□□□□ -1.91
APL1	YJR005W	TY1A-PR1	P0CX58	440 aa		3.15	□□□□□ -1.91
APL1	YJR005W	TY1A-OR	P0CX59	440 aa		3.15	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 64.1 ms