RNA–Protein interactions for RNA: YHR027C

RPN1, Transcript of Non-ATPase base subunit of the 19S RP of the 26S proteasome, yeastyeast

Gene RPN1, Length 2,982 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN1YHR027C SIC1P38634 284 aa3.86□□□□□ -1.79
RPN1YHR027C PIL1P53252 339 aaKnown RBP3.86□□□□□ -1.79
RPN1YHR027C DNA2P38859 1522 aa3.86□□□□□ -1.79
RPN1YHR027C NOP58Q12499 511 aaKnown RBP3.85□□□□□ -1.79
RPN1YHR027C BYE1P36106 594 aa3.85□□□□□ -1.79
RPN1YHR027C FUN12P39730 1002 aaKnown RBP3.85□□□□□ -1.79
RPN1YHR027C RAD26P40352 1085 aa3.85□□□□□ -1.79
RPN1YHR027C SMC3P47037 1230 aa3.85□□□□□ -1.79
RPN1YHR027C TY1B-DR4Q07793 1604 aa3.84□□□□□ -1.79
RPN1YHR027C SCC2Q04002 1493 aa3.84□□□□□ -1.79
RPN1YHR027C REV3P14284 1504 aa3.84□□□□□ -1.79
RPN1YHR027C TAF2P23255 1407 aa3.83□□□□□ -1.8
RPN1YHR027C SMC4Q12267 1418 aa3.83□□□□□ -1.8
RPN1YHR027C GCN2P15442 1659 aa3.83□□□□□ -1.8
RPN1YHR027C NOT3P06102 836 aaKnown RBP3.83□□□□□ -1.8
RPN1YHR027C ABP1P15891 592 aaKnown RBP3.83□□□□□ -1.8
RPN1YHR027C RTT106P40161 455 aa3.83□□□□□ -1.8
RPN1YHR027C BPT1P14772 1559 aa3.82□□□□□ -1.8
RPN1YHR027C ETT1Q08421 412 aaKnown RBP3.82□□□□□ -1.8
RPN1YHR027C PSD2P53037 1138 aaKnown RBP3.82□□□□□ -1.8
RPN1YHR027C SIN3P22579 1536 aa3.82□□□□□ -1.8
RPN1YHR027C MSH3P25336 1018 aa3.81□□□□□ -1.8
RPN1YHR027C LEU3P08638 886 aa3.81□□□□□ -1.8
RPN1YHR027C SWE1P32944 819 aa3.81□□□□□ -1.8
RPN1YHR027C TIF4632P39936 914 aaKnown RBP3.81□□□□□ -1.8
RPN1YHR027C SSK2P53599 1579 aa3.81□□□□□ -1.8
RPN1YHR027C IFH1P39520 1085 aa3.81□□□□□ -1.8
RPN1YHR027C MSH4P40965 878 aaPredicted RBP3.81□□□□□ -1.8
RPN1YHR027C POL1P13382 1468 aa3.8□□□□□ -1.8
RPN1YHR027C YCF1P39109 1515 aaKnown RBP3.8□□□□□ -1.8
RPN1YHR027C MED8P38304 223 aa3.8□□□□□ -1.8
RPN1YHR027C RPN1P38764 993 aaKnown RBP3.8□□□□□ -1.8
RPN1YHR027C DJP1P40564 432 aa3.8□□□□□ -1.8
RPN1YHR027C YPP1P46951 817 aa3.8□□□□□ -1.8
RPN1YHR027C GRX3Q03835 250 aa3.8□□□□□ -1.8
RPN1YHR027C BMS1Q08965 1183 aaKnown RBP3.8□□□□□ -1.8
RPN1YHR027C PRP3Q03338 469 aaPredicted RBP3.8□□□□□ -1.8
RPN1YHR027C KNS1P32350 737 aaPredicted RBP3.79□□□□□ -1.8
RPN1YHR027C ECM1P39715 212 aa3.79□□□□□ -1.8
RPN1YHR027C CHZ1P40019 153 aaPredicted RBP3.79□□□□□ -1.8
RPN1YHR027C RLP24Q07915 199 aaKnown RBP3.79□□□□□ -1.8
RPN1YHR027C TRM3Q07527 1436 aa3.79□□□□□ -1.8
RPN1YHR027C HSL1P34244 1518 aa3.79□□□□□ -1.8
RPN1YHR027C PCT1P13259 424 aa3.79□□□□□ -1.8
RPN1YHR027C MSP1P28737 362 aa3.78□□□□□ -1.8
RPN1YHR027C ESC1Q03661 1658 aaKnown RBP3.78□□□□□ -1.8
RPN1YHR027C GEA1P47102 1408 aaPredicted RBP3.78□□□□□ -1.8
RPN1YHR027C SRP54P20424 541 aaKnown RBP3.78□□□□□ -1.8
RPN1YHR027C TAN1P53072 289 aaPredicted RBP3.78□□□□□ -1.81
RPN1YHR027C NNF2P53253 936 aa3.78□□□□□ -1.81
RPN1YHR027C MHP1P43638 1398 aa3.78□□□□□ -1.81
RPN1YHR027C PAN1P32521 1480 aa3.77□□□□□ -1.81
RPN1YHR027C CLB5P30283 435 aa3.77□□□□□ -1.81
RPN1YHR027C ESP1Q03018 1630 aa3.77□□□□□ -1.81
RPN1YHR027C LTV1P34078 463 aa3.77□□□□□ -1.81
RPN1YHR027C DSN1P40568 576 aa3.77□□□□□ -1.81
RPN1YHR027C ECM16Q04217 1267 aaKnown RBP3.77□□□□□ -1.81
RPN1YHR027C RPN7Q06103 429 aaKnown RBP3.77□□□□□ -1.81
RPN1YHR027C NOP8Q08287 484 aaPredicted RBP3.77□□□□□ -1.81
RPN1YHR027C DOS2P54858 310 aa3.76□□□□□ -1.81
RPN1YHR027C NUP159P40477 1460 aa3.76□□□□□ -1.81
RPN1YHR027C NST1P53935 1240 aa3.76□□□□□ -1.81
RPN1YHR027C KOG1P38873 1557 aa3.76□□□□□ -1.81
RPN1YHR027C SWR1Q05471 1514 aa3.76□□□□□ -1.81
RPN1YHR027C SAP190P36123 1033 aa3.75□□□□□ -1.81
RPN1YHR027C CIN4P39110 191 aa3.75□□□□□ -1.81
RPN1YHR027C KIP3P53086 805 aaKnown RBP3.75□□□□□ -1.81
RPN1YHR027C MDG1P53885 366 aa3.75□□□□□ -1.81
RPN1YHR027C HIR3P47171 1648 aa3.75□□□□□ -1.81
RPN1YHR027C VPS24P36095 224 aaKnown RBP3.75□□□□□ -1.81
RPN1YHR027C PDR5P33302 1511 aaKnown RBP3.74□□□□□ -1.81
RPN1YHR027C TSC11P40061 1430 aa3.74□□□□□ -1.81
RPN1YHR027C RAD51P25454 400 aa3.74□□□□□ -1.81
RPN1YHR027C ARL1P38116 183 aaKnown RBP3.74□□□□□ -1.81
RPN1YHR027C VPS72Q03388 795 aa3.74□□□□□ -1.81
RPN1YHR027C NUP157P40064 1391 aaKnown RBP3.74□□□□□ -1.81
RPN1YHR027C TLG1Q03322 224 aa3.74□□□□□ -1.81
RPN1YHR027C YSH1Q06224 779 aaPredicted RBP3.74□□□□□ -1.81
RPN1YHR027C RRP15Q06511 250 aaPredicted RBP3.74□□□□□ -1.81
RPN1YHR027C SNU71P53207 620 aaKnown RBP3.73□□□□□ -1.81
RPN1YHR027C NOP14Q99207 810 aaKnown RBP3.73□□□□□ -1.81
RPN1YHR027C YOL087CQ99247 1116 aa3.73□□□□□ -1.81
RPN1YHR027C SWI3P32591 825 aa3.73□□□□□ -1.81
RPN1YHR027C LSP1Q12230 341 aaKnown RBP3.73□□□□□ -1.81
RPN1YHR027C SNQ2P32568 1501 aaKnown RBP3.73□□□□□ -1.81
RPN1YHR027C VPS60Q03390 229 aa3.72□□□□□ -1.81
RPN1YHR027C RPS0AP32905 252 aaKnown RBP3.72□□□□□ -1.81
RPN1YHR027C RAD2P07276 1031 aa3.72□□□□□ -1.81
RPN1YHR027C RSC8P43609 557 aaKnown RBP3.72□□□□□ -1.81
RPN1YHR027C TEA1P47988 759 aa3.72□□□□□ -1.81
RPN1YHR027C ERV41Q04651 352 aa3.72□□□□□ -1.81
RPN1YHR027C APL5Q08951 932 aaKnown RBP3.72□□□□□ -1.81
RPN1YHR027C CBF5P33322 483 aaKnown RBP RIP-Chip data3.71□□□□□ -1.82not detected
RPN1YHR027C TPM2P40414 161 aa3.71□□□□□ -1.82
RPN1YHR027C RSC1P53236 928 aa3.71□□□□□ -1.82
RPN1YHR027C RAD9P14737 1309 aa3.71□□□□□ -1.82
RPN1YHR027C PET111P08468 800 aa3.71□□□□□ -1.82
RPN1YHR027C ALD3P54114 506 aa3.71□□□□□ -1.82
RPN1YHR027C DEP1P31385 405 aa3.7□□□□□ -1.82
RPN1YHR027C TCD1P38756 429 aa3.7□□□□□ -1.82
Retrieved 100 of 5,963 RNA–protein pairs in 48.1 ms