RNA–Protein interactions for RNA: YGR009C

SEC9, Transcript of t-SNARE protein required for secretory vesicle-plasma membrane fusion, yeastyeast

Gene SEC9, Length 1,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC9YGR009C YJR008WP47085 338 aa6.04□□□□□ -1.44
SEC9YGR009C TAF13P11747 167 aa6.04□□□□□ -1.44
SEC9YGR009C DAL5P15365 543 aa6.04□□□□□ -1.44
SEC9YGR009C SPC42P36094 363 aa6.04□□□□□ -1.44
SEC9YGR009C SSF1P38789 453 aaPredicted RBP6.04□□□□□ -1.44
SEC9YGR009C FUN12P39730 1002 aaKnown RBP6.04□□□□□ -1.44
SEC9YGR009C RPT2P40327 437 aaKnown RBP6.04□□□□□ -1.44
SEC9YGR009C ZDS1P50111 915 aaKnown RBP6.04□□□□□ -1.44
SEC9YGR009C CKB1P43639 278 aa6.02□□□□□ -1.45
SEC9YGR009C BRE1Q07457 700 aaKnown RBP6.02□□□□□ -1.45
SEC9YGR009C SPT7P35177 1332 aa6.01□□□□□ -1.45
SEC9YGR009C HOS4P40480 1083 aa6.01□□□□□ -1.45
SEC9YGR009C TY4A-JP47023 414 aa6.01□□□□□ -1.45
SEC9YGR009C GRX3Q03835 250 aa6.01□□□□□ -1.45
SEC9YGR009C YMR196WQ04336 1088 aa6.01□□□□□ -1.45
SEC9YGR009C TCB2P48231 1178 aa6□□□□□ -1.45
SEC9YGR009C SLX8P40072 274 aa5.99□□□□□ -1.45
SEC9YGR009C RAD2P07276 1031 aa5.98□□□□□ -1.45
SEC9YGR009C SEC20P28791 383 aa5.97□□□□□ -1.45
SEC9YGR009C HSC82P15108 705 aaKnown RBP5.97□□□□□ -1.45
SEC9YGR009C FPR4Q06205 392 aaPredicted RBP5.97□□□□□ -1.45
SEC9YGR009C AIM21P40563 679 aa5.96□□□□□ -1.46
SEC9YGR009C PTP3P40048 928 aa5.95□□□□□ -1.46
SEC9YGR009C YNL011CP53980 444 aa5.95□□□□□ -1.46
SEC9YGR009C GIR2Q03768 265 aaPredicted RBP5.95□□□□□ -1.46
SEC9YGR009C YSH1Q06224 779 aaPredicted RBP5.95□□□□□ -1.46
SEC9YGR009C RIX1P38883 763 aaPredicted RBP5.94□□□□□ -1.46
SEC9YGR009C PIL1P53252 339 aaKnown RBP5.94□□□□□ -1.46
SEC9YGR009C GAL11P19659 1081 aa5.93□□□□□ -1.46
SEC9YGR009C SPT21P35209 758 aa5.93□□□□□ -1.46
SEC9YGR009C CDC27P38042 758 aa5.93□□□□□ -1.46
SEC9YGR009C NSR1P27476 414 aaKnown RBP RIP-Chip data5.93□□□□□ -1.46not detected
SEC9YGR009C CDC11P32458 415 aa5.93□□□□□ -1.46
SEC9YGR009C PAM1P37304 830 aaKnown RBP5.93□□□□□ -1.46
SEC9YGR009C MET10P39692 1035 aa5.92□□□□□ -1.46
SEC9YGR009C MRX12P47084 519 aa5.91□□□□□ -1.46
SEC9YGR009C PEA2P40091 420 aa5.91□□□□□ -1.46
SEC9YGR009C MEH1Q02205 184 aa5.91□□□□□ -1.46
SEC9YGR009C PKH1Q03407 766 aa5.91□□□□□ -1.46
SEC9YGR009C UBX5Q06682 500 aa5.91□□□□□ -1.46
SEC9YGR009C PSK2Q08217 1101 aa5.91□□□□□ -1.46
SEC9YGR009C YKR023WP36119 530 aaKnown RBP5.89□□□□□ -1.47
SEC9YGR009C NMD2P38798 1089 aaKnown RBP5.89□□□□□ -1.47
SEC9YGR009C INO80P53115 1489 aa5.89□□□□□ -1.47
SEC9YGR009C SEC9P40357 651 aa5.89□□□□□ -1.47
SEC9YGR009C YGR130CP53278 816 aa5.89□□□□□ -1.47
SEC9YGR009C MCM1P11746 286 aa5.88□□□□□ -1.47
SEC9YGR009C DJP1P40564 432 aa5.88□□□□□ -1.47
SEC9YGR009C RCF1Q03713 159 aa5.88□□□□□ -1.47
SEC9YGR009C SSA4P22202 642 aaKnown RBP5.87□□□□□ -1.47
SEC9YGR009C MPE1P35728 441 aaKnown RBP5.87□□□□□ -1.47
SEC9YGR009C OCA5P38738 679 aa5.87□□□□□ -1.47
SEC9YGR009C YAF9P53930 226 aa5.87□□□□□ -1.47
SEC9YGR009C CEF1Q03654 590 aaPredicted RBP5.87□□□□□ -1.47
SEC9YGR009C YDR341CQ05506 607 aaKnown RBP5.87□□□□□ -1.47
SEC9YGR009C CFT2Q12102 859 aaPredicted RBP5.87□□□□□ -1.47
SEC9YGR009C RPA135P22138 1203 aaKnown RBP5.86□□□□□ -1.47
SEC9YGR009C SPC110P32380 944 aa5.86□□□□□ -1.47
SEC9YGR009C TOM20P35180 183 aa5.86□□□□□ -1.47
SEC9YGR009C POL5P39985 1022 aaKnown RBP5.86□□□□□ -1.47
SEC9YGR009C SYH1Q02875 849 aaKnown RBP5.86□□□□□ -1.47
SEC9YGR009C MFT1P33441 392 aaKnown RBP5.86□□□□□ -1.47
SEC9YGR009C PMC1P38929 1173 aaPredicted RBP5.86□□□□□ -1.47
SEC9YGR009C YLR257WQ06146 321 aaKnown RBP5.86□□□□□ -1.47
SEC9YGR009C NMD3P38861 518 aaKnown RBP5.85□□□□□ -1.47
SEC9YGR009C BOI2P39969 1040 aa5.85□□□□□ -1.47
SEC9YGR009C SEC27P41811 889 aaKnown RBP5.85□□□□□ -1.47
SEC9YGR009C GDE1Q02979 1223 aa5.85□□□□□ -1.47
SEC9YGR009C VPS4P52917 437 aa5.84□□□□□ -1.47
SEC9YGR009C NNF2P53253 936 aa5.84□□□□□ -1.47
SEC9YGR009C YDL121CQ07541 149 aa5.84□□□□□ -1.48
SEC9YGR009C ETT1Q08421 412 aaKnown RBP5.84□□□□□ -1.48
SEC9YGR009C VMA4P22203 233 aaKnown RBP5.83□□□□□ -1.48
SEC9YGR009C RAD51P25454 400 aa5.83□□□□□ -1.48
SEC9YGR009C VPS27P40343 622 aaKnown RBP5.83□□□□□ -1.48
SEC9YGR009C TAF1P46677 1066 aa5.83□□□□□ -1.48
SEC9YGR009C APL5Q08951 932 aaKnown RBP5.83□□□□□ -1.48
SEC9YGR009C ERP2P39704 215 aa5.82□□□□□ -1.48
SEC9YGR009C NOC2P39744 710 aaKnown RBP5.82□□□□□ -1.48
SEC9YGR009C MTR4P47047 1073 aaKnown RBP5.82□□□□□ -1.48
SEC9YGR009C TMA64Q04600 565 aaKnown RBP5.82□□□□□ -1.48
SEC9YGR009C TY1B-AO13527 1196 aaKnown RBP5.82□□□□□ -1.48
SEC9YGR009C FAF1P40546 346 aaPredicted RBP5.82□□□□□ -1.48
SEC9YGR009C UBP10P53874 792 aaPredicted RBP5.82□□□□□ -1.48
SEC9YGR009C NST1P53935 1240 aa5.82□□□□□ -1.48
SEC9YGR009C PET111P08468 800 aa5.81□□□□□ -1.48
SEC9YGR009C BLI1P35727 113 aa5.81□□□□□ -1.48
SEC9YGR009C IMH1Q06704 911 aaKnown RBP5.81□□□□□ -1.48
SEC9YGR009C CLF1Q12309 687 aaPredicted RBP5.81□□□□□ -1.48
SEC9YGR009C PWP2P25635 923 aaKnown RBP5.8□□□□□ -1.48
SEC9YGR009C LEM3P42838 414 aa5.8□□□□□ -1.48
SEC9YGR009C YGL081WP53156 320 aa5.8□□□□□ -1.48
SEC9YGR009C MAM3Q12296 706 aa5.8□□□□□ -1.48
SEC9YGR009C TPM2P40414 161 aa5.8□□□□□ -1.48
SEC9YGR009C HOP09932 586 aa5.79□□□□□ -1.48
SEC9YGR009C OPI1P21957 404 aa5.79□□□□□ -1.48
SEC9YGR009C NFU1P32860 256 aa5.79□□□□□ -1.48
SEC9YGR009C IES1P43579 692 aa5.79□□□□□ -1.48
SEC9YGR009C HOS2P53096 452 aaPredicted RBP5.79□□□□□ -1.48
SEC9YGR009C ESF2P53743 316 aaKnown RBP5.79□□□□□ -1.48
Retrieved 100 of 5,963 RNA–protein pairs in 47.6 ms