RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	YAP5	P40574	245 aa		6.29	□□□□□ -1.4
UBX5	YDR330W	GUA1	P38625	525 aa	Known RBP	6.28	□□□□□ -1.4
UBX5	YDR330W	INO80	P53115	1489 aa		6.27	□□□□□ -1.41
UBX5	YDR330W	ATH1	P48016	1211 aa		6.26	□□□□□ -1.41
UBX5	YDR330W	VMA1	P17255	1071 aa	Known RBP	6.25	□□□□□ -1.41
UBX5	YDR330W	VHR2	P40041	505 aa		6.25	□□□□□ -1.41
UBX5	YDR330W	PIB1	Q06651	286 aa		6.25	□□□□□ -1.41
UBX5	YDR330W	KIC1	P38692	1080 aa		6.25	□□□□□ -1.41
UBX5	YDR330W	GRE2	Q12068	342 aa	Known RBP	6.25	□□□□□ -1.41
UBX5	YDR330W	GUT1	P32190	709 aa		6.24	□□□□□ -1.41
UBX5	YDR330W	HPC2	Q01448	625 aa		6.24	□□□□□ -1.41
UBX5	YDR330W	UBP14	P38237	781 aa	Known RBP	6.22	□□□□□ -1.41
UBX5	YDR330W	YDR090C	Q03193	310 aa		6.22	□□□□□ -1.41
UBX5	YDR330W	BRL1	P38770	471 aa		6.2	□□□□□ -1.42
UBX5	YDR330W	YLR326W	Q06170	240 aa	Known RBP	6.2	□□□□□ -1.42
UBX5	YDR330W	SSA2	P10592	639 aa	Known RBP	6.2	□□□□□ -1.42
UBX5	YDR330W	TFB3	Q03290	321 aa		6.19	□□□□□ -1.42
UBX5	YDR330W	PSE1	P32337	1089 aa	Known RBP	6.18	□□□□□ -1.42
UBX5	YDR330W	RAD54	P32863	898 aa		6.18	□□□□□ -1.42
UBX5	YDR330W	YGR273C	P53329	174 aa		6.18	□□□□□ -1.42
UBX5	YDR330W	TCB3	Q03640	1545 aa	Known RBP	6.17	□□□□□ -1.42
UBX5	YDR330W	SAM3	Q08986	587 aa		6.16	□□□□□ -1.42
UBX5	YDR330W	GYP5	Q12344	894 aa		6.15	□□□□□ -1.42
UBX5	YDR330W	SPA2	P23201	1466 aa	Known RBP	6.15	□□□□□ -1.42
UBX5	YDR330W	KEX1	P09620	729 aa		6.15	□□□□□ -1.43
UBX5	YDR330W	CSN12	P47130	423 aa		6.15	□□□□□ -1.43
UBX5	YDR330W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	6.13	□□□□□ -1.43	not detected
UBX5	YDR330W	GTT3	P39996	337 aa		6.13	□□□□□ -1.43
UBX5	YDR330W	TY1B-DR4	Q07793	1604 aa		6.12	□□□□□ -1.43
UBX5	YDR330W	SSN2	P38931	1420 aa		6.12	□□□□□ -1.43
UBX5	YDR330W	TEA1	P47988	759 aa		6.11	□□□□□ -1.43
UBX5	YDR330W	SIS1	P25294	352 aa	Known RBP	6.09	□□□□□ -1.43
UBX5	YDR330W	SOL3	P38858	249 aa		6.09	□□□□□ -1.43
UBX5	YDR330W	PKC1	P24583	1151 aa		6.09	□□□□□ -1.44
UBX5	YDR330W	ORC6	P38826	435 aa		6.09	□□□□□ -1.44
UBX5	YDR330W	CLB5	P30283	435 aa		6.08	□□□□□ -1.44
UBX5	YDR330W	DCW1	P36091	449 aa		6.08	□□□□□ -1.44
UBX5	YDR330W	MST1	P07236	462 aa		6.07	□□□□□ -1.44
UBX5	YDR330W	UBP9	P39967	754 aa		6.06	□□□□□ -1.44
UBX5	YDR330W	YJL007C	P47080	104 aa		6.06	□□□□□ -1.44
UBX5	YDR330W	MON2	P48563	1636 aa	Predicted RBP	6.05	□□□□□ -1.44
UBX5	YDR330W	HTA1	P04911	132 aa	Known RBP	6.05	□□□□□ -1.44
UBX5	YDR330W	HTA2	P04912	132 aa		6.05	□□□□□ -1.44
UBX5	YDR330W	RPP1B	P10622	106 aa	Known RBP	6.05	□□□□□ -1.44
UBX5	YDR330W	BIM1	P40013	344 aa		6.05	□□□□□ -1.44
UBX5	YDR330W	YOL036W	Q08206	761 aa		6.05	□□□□□ -1.44
UBX5	YDR330W	AI4	P03878	556 aa		6.04	□□□□□ -1.44
UBX5	YDR330W	RPL34B	P40525	121 aa	Known RBP	6.04	□□□□□ -1.44
UBX5	YDR330W	SSA1	P10591	642 aa	Known RBP	6.04	□□□□□ -1.44
UBX5	YDR330W	RGR1	P19263	1082 aa		6.04	□□□□□ -1.44
UBX5	YDR330W	SET4	P42948	560 aa		6.04	□□□□□ -1.44
UBX5	YDR330W	MPH3	P0CE00	602 aa		6.03	□□□□□ -1.44
UBX5	YDR330W	NST1	P53935	1240 aa		6.03	□□□□□ -1.44
UBX5	YDR330W	KTR1	P27810	393 aa	Known RBP	6.02	□□□□□ -1.45
UBX5	YDR330W	YBL036C	P38197	257 aa		6.02	□□□□□ -1.45
UBX5	YDR330W	MVP1	P40959	511 aa	Known RBP	6.02	□□□□□ -1.45
UBX5	YDR330W	YMR196W	Q04336	1088 aa		6.02	□□□□□ -1.45
UBX5	YDR330W	GLN1	P32288	370 aa	Known RBP	6.01	□□□□□ -1.45
UBX5	YDR330W	ATG32	P40458	529 aa		6.01	□□□□□ -1.45
UBX5	YDR330W	CSC1	Q06538	782 aa		6.01	□□□□□ -1.45
UBX5	YDR330W	SUB2	Q07478	446 aa	Known RBP	6.01	□□□□□ -1.45
UBX5	YDR330W	TYW1	Q08960	810 aa	Known RBP	6.01	□□□□□ -1.45
UBX5	YDR330W	MSB4	Q12317	492 aa		6.01	□□□□□ -1.45
UBX5	YDR330W	SSA4	P22202	642 aa	Known RBP	6	□□□□□ -1.45
UBX5	YDR330W	GEF1	P37020	779 aa		6	□□□□□ -1.45
UBX5	YDR330W	HSL1	P34244	1518 aa		5.99	□□□□□ -1.45
UBX5	YDR330W	HST2	P53686	357 aa		5.99	□□□□□ -1.45
UBX5	YDR330W	NIS1	P53939	407 aa		5.99	□□□□□ -1.45
UBX5	YDR330W	TIF1	P10081	395 aa	Known RBP	5.98	□□□□□ -1.45
UBX5	YDR330W	SLI15	P38283	698 aa		5.98	□□□□□ -1.45
UBX5	YDR330W	ILV3	P39522	585 aa	Known RBP	5.98	□□□□□ -1.45
UBX5	YDR330W	FPK1	P53739	893 aa		5.98	□□□□□ -1.45
UBX5	YDR330W	GAP1	P19145	602 aa	Predicted RBP	5.97	□□□□□ -1.45
UBX5	YDR330W	CSE4	P36012	229 aa		5.97	□□□□□ -1.45
UBX5	YDR330W	YEL023C	P39992	682 aa		5.97	□□□□□ -1.45
UBX5	YDR330W	DAN4	P47179	1161 aa		5.97	□□□□□ -1.45
UBX5	YDR330W	MMP1	Q12372	583 aa		5.97	□□□□□ -1.45
UBX5	YDR330W	SPT6	P23615	1451 aa	Known RBP	5.96	□□□□□ -1.45
UBX5	YDR330W	PKH3	Q03306	898 aa	Predicted RBP	5.96	□□□□□ -1.46
UBX5	YDR330W	YML020W	Q03722	664 aa		5.96	□□□□□ -1.46
UBX5	YDR330W	YPR109W	Q06104	294 aa		5.96	□□□□□ -1.46
UBX5	YDR330W	TFB4	Q12004	338 aa		5.96	□□□□□ -1.46
UBX5	YDR330W	SLX8	P40072	274 aa		5.95	□□□□□ -1.46
UBX5	YDR330W	PEX21	P50091	288 aa		5.95	□□□□□ -1.46
UBX5	YDR330W	RAD59	Q12223	238 aa		5.95	□□□□□ -1.46
UBX5	YDR330W	SWR1	Q05471	1514 aa		5.95	□□□□□ -1.46
UBX5	YDR330W	EAP1	P36041	632 aa	Known RBP	5.94	□□□□□ -1.46
UBX5	YDR330W	BIO2	P32451	375 aa		5.94	□□□□□ -1.46
UBX5	YDR330W	RTG2	P32608	588 aa	Known RBP	5.94	□□□□□ -1.46
UBX5	YDR330W	ERG12	P07277	443 aa		5.93	□□□□□ -1.46
UBX5	YDR330W	ESS1	P22696	170 aa		5.93	□□□□□ -1.46
UBX5	YDR330W	PTC4	P38089	393 aa		5.93	□□□□□ -1.46
UBX5	YDR330W	YPR204W	Q08995	1032 aa		5.93	□□□□□ -1.46
UBX5	YDR330W	CDC73	Q06697	393 aa		5.92	□□□□□ -1.46
UBX5	YDR330W	ARG8	P18544	423 aa		5.91	□□□□□ -1.46
UBX5	YDR330W	SIT4	P20604	311 aa		5.91	□□□□□ -1.46
UBX5	YDR330W	SCJ1	P25303	377 aa		5.91	□□□□□ -1.46
UBX5	YDR330W	YNL108C	P53929	270 aa		5.91	□□□□□ -1.46
UBX5	YDR330W	NOP8	Q08287	484 aa	Predicted RBP	5.91	□□□□□ -1.46
UBX5	YDR330W	TUM1	Q08686	304 aa	Known RBP	5.91	□□□□□ -1.46

Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms