RNA–Protein interactions for RNA: YDL220C

CDC13, Transcript of Single stranded DNA-binding protein found at TG1-3 telomere G-tails, yeastyeast

Gene CDC13, Length 2,775 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC13YDL220C SMC3P47037 1230 aa8.62□□□□□ -1.03
CDC13YDL220C RPN1P38764 993 aaKnown RBP8.62□□□□□ -1.03
CDC13YDL220C TOP2P06786 1428 aaKnown RBP8.62□□□□□ -1.03
CDC13YDL220C BUD4P47136 1447 aa8.62□□□□□ -1.03
CDC13YDL220C PIL1P53252 339 aaKnown RBP8.61□□□□□ -1.03
CDC13YDL220C SSM4P40318 1319 aa8.61□□□□□ -1.03
CDC13YDL220C ECM16Q04217 1267 aaKnown RBP8.61□□□□□ -1.03
CDC13YDL220C PLP2Q12017 286 aa8.61□□□□□ -1.03
CDC13YDL220C MSH4P40965 878 aaPredicted RBP8.6□□□□□ -1.03
CDC13YDL220C NNF2P53253 936 aa8.59□□□□□ -1.03
CDC13YDL220C DSN1P40568 576 aa8.59□□□□□ -1.03
CDC13YDL220C SRB8P25648 1427 aa8.58□□□□□ -1.04
CDC13YDL220C MMS1Q06211 1407 aa8.58□□□□□ -1.04
CDC13YDL220C PRP3Q03338 469 aaPredicted RBP8.56□□□□□ -1.04
CDC13YDL220C BMS1Q08965 1183 aaKnown RBP8.56□□□□□ -1.04
CDC13YDL220C MYO2P19524 1574 aaKnown RBP8.55□□□□□ -1.04
CDC13YDL220C HSL1P34244 1518 aa8.55□□□□□ -1.04
CDC13YDL220C PDR10P51533 1564 aa8.54□□□□□ -1.04
CDC13YDL220C SPT6P23615 1451 aaKnown RBP8.53□□□□□ -1.04
CDC13YDL220C TIF4632P39936 914 aaKnown RBP8.53□□□□□ -1.04
CDC13YDL220C PAP2P53632 584 aaKnown RBP8.53□□□□□ -1.04
CDC13YDL220C RPN7Q06103 429 aaKnown RBP8.53□□□□□ -1.04
CDC13YDL220C KNS1P32350 737 aaPredicted RBP8.52□□□□□ -1.05
CDC13YDL220C LTV1P34078 463 aa8.51□□□□□ -1.05
CDC13YDL220C MED8P38304 223 aa8.51□□□□□ -1.05
CDC13YDL220C PEP1P32319 1579 aa8.51□□□□□ -1.05
CDC13YDL220C NOT3P06102 836 aaKnown RBP8.51□□□□□ -1.05
CDC13YDL220C TY1B-DR4Q07793 1604 aa8.5□□□□□ -1.05
CDC13YDL220C STU1P38198 1513 aa8.49□□□□□ -1.05
CDC13YDL220C PCT1P13259 424 aa8.49□□□□□ -1.05
CDC13YDL220C ECM1P39715 212 aa8.49□□□□□ -1.05
CDC13YDL220C BYE1P36106 594 aa8.48□□□□□ -1.05
CDC13YDL220C YIR014WP40570 242 aa8.48□□□□□ -1.05
CDC13YDL220C SNU71P53207 620 aaKnown RBP8.48□□□□□ -1.05
CDC13YDL220C YSH1Q06224 779 aaPredicted RBP8.48□□□□□ -1.05
CDC13YDL220C YLR419WQ06698 1435 aaKnown RBP8.48□□□□□ -1.05
CDC13YDL220C THO2P53552 1597 aaKnown RBP8.46□□□□□ -1.05
CDC13YDL220C ARL1P38116 183 aaKnown RBP8.46□□□□□ -1.06
CDC13YDL220C KIP3P53086 805 aaKnown RBP8.46□□□□□ -1.06
CDC13YDL220C MDG1P53885 366 aa8.46□□□□□ -1.06
CDC13YDL220C REV3P14284 1504 aa8.45□□□□□ -1.06
CDC13YDL220C MSP1P28737 362 aa8.45□□□□□ -1.06
CDC13YDL220C RIM101P33400 625 aa8.45□□□□□ -1.06
CDC13YDL220C NOP8Q08287 484 aaPredicted RBP8.45□□□□□ -1.06
CDC13YDL220C RRP14P36080 434 aaKnown RBP8.44□□□□□ -1.06
CDC13YDL220C SAP190P36123 1033 aa8.44□□□□□ -1.06
CDC13YDL220C HIR3P47171 1648 aa8.44□□□□□ -1.06
CDC13YDL220C RAD2P07276 1031 aa8.44□□□□□ -1.06
CDC13YDL220C CLB1P24868 471 aa8.44□□□□□ -1.06
CDC13YDL220C SPB4P25808 606 aaPredicted RBP8.44□□□□□ -1.06
CDC13YDL220C RSC1P53236 928 aa8.44□□□□□ -1.06
CDC13YDL220C BPT1P14772 1559 aa8.44□□□□□ -1.06
CDC13YDL220C MYO4P32492 1471 aa8.44□□□□□ -1.06
CDC13YDL220C TAN1P53072 289 aaPredicted RBP8.43□□□□□ -1.06
CDC13YDL220C TAF2P23255 1407 aa8.42□□□□□ -1.06
CDC13YDL220C CBF5P33322 483 aaKnown RBP RIP-Chip data8.42□□□□□ -1.06not detected
CDC13YDL220C NUP170P38181 1502 aa8.42□□□□□ -1.06
CDC13YDL220C SCC2Q04002 1493 aa8.42□□□□□ -1.06
CDC13YDL220C RPS0AP32905 252 aaKnown RBP8.42□□□□□ -1.06
CDC13YDL220C TPM2P40414 161 aa8.42□□□□□ -1.06
CDC13YDL220C NST1P53935 1240 aa8.42□□□□□ -1.06
CDC13YDL220C ABP1P15891 592 aaKnown RBP8.41□□□□□ -1.06
CDC13YDL220C DEP1P31385 405 aa8.41□□□□□ -1.06
CDC13YDL220C EDE1P34216 1381 aa8.41□□□□□ -1.06
CDC13YDL220C TY1B-AO13527 1196 aaKnown RBP8.4□□□□□ -1.06
CDC13YDL220C SSK2P53599 1579 aa8.4□□□□□ -1.06
CDC13YDL220C SSA1P10591 642 aaKnown RBP8.4□□□□□ -1.06
CDC13YDL220C SSA2P10592 639 aaKnown RBP8.4□□□□□ -1.06
CDC13YDL220C VPS24P36095 224 aaKnown RBP8.4□□□□□ -1.06
CDC13YDL220C SUP35P05453 685 aaKnown RBP8.39□□□□□ -1.07
CDC13YDL220C UTP13Q05946 817 aaKnown RBP8.39□□□□□ -1.07
CDC13YDL220C TLG1Q03322 224 aa8.39□□□□□ -1.07
CDC13YDL220C NOP14Q99207 810 aaKnown RBP8.39□□□□□ -1.07
CDC13YDL220C RAD51P25454 400 aa8.38□□□□□ -1.07
CDC13YDL220C RSC8P43609 557 aaKnown RBP8.38□□□□□ -1.07
CDC13YDL220C ORC1P54784 914 aaPredicted RBP8.38□□□□□ -1.07
CDC13YDL220C YPK9Q12697 1472 aa8.38□□□□□ -1.07
CDC13YDL220C SIN3P22579 1536 aa8.38□□□□□ -1.07
CDC13YDL220C NHA1Q99271 985 aa8.37□□□□□ -1.07
CDC13YDL220C POL1P13382 1468 aa8.36□□□□□ -1.07
CDC13YDL220C BDP1P46678 594 aa8.36□□□□□ -1.07
CDC13YDL220C MCM1P11746 286 aa8.36□□□□□ -1.07
CDC13YDL220C SRP54P20424 541 aaKnown RBP8.36□□□□□ -1.07
CDC13YDL220C UBP10P53874 792 aaPredicted RBP8.36□□□□□ -1.07
CDC13YDL220C SMC4Q12267 1418 aa8.35□□□□□ -1.07
CDC13YDL220C DSF2P38213 736 aa8.35□□□□□ -1.07
CDC13YDL220C CIN4P39110 191 aa8.35□□□□□ -1.07
CDC13YDL220C TOP1P04786 769 aa8.35□□□□□ -1.07
CDC13YDL220C VPS60Q03390 229 aa8.35□□□□□ -1.07
CDC13YDL220C PSE1P32337 1089 aaKnown RBP8.34□□□□□ -1.07
CDC13YDL220C PUP2P32379 260 aa8.34□□□□□ -1.07
CDC13YDL220C MGA2P40578 1113 aa8.33□□□□□ -1.08
CDC13YDL220C TEA1P47988 759 aa8.33□□□□□ -1.08
CDC13YDL220C MLP2P40457 1679 aa8.33□□□□□ -1.08
CDC13YDL220C HIF1Q12373 385 aa8.33□□□□□ -1.08
CDC13YDL220C COG8Q04632 607 aa8.33□□□□□ -1.08
CDC13YDL220C TOA1P32773 286 aa8.32□□□□□ -1.08
CDC13YDL220C LEM3P42838 414 aa8.32□□□□□ -1.08
CDC13YDL220C ITC1P53125 1264 aa8.32□□□□□ -1.08
CDC13YDL220C RVB2Q12464 471 aaKnown RBP8.32□□□□□ -1.08
Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms