RNA–Protein interactions for RNA: ENST00000640769.1

RTTN-222, Transcript of rotatin, human

APPRIS P1 TSL 2 BASIC

Gene RTTN, Length 8,088 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTTN-222	ENST00000640769	DDX10	Q13206	875 aa	Known RBP	11.38	□□□□□ -0.59
RTTN-222	ENST00000640769	MYH16	Q9H6N6	1097 aa		11.37	□□□□□ -0.59
RTTN-222	ENST00000640769	DRC7	Q8IY82	874 aa		11.36	□□□□□ -0.59
RTTN-222	ENST00000640769		A0A0U1RQG5	324 aa	Predicted RBP	11.35	□□□□□ -0.59
RTTN-222	ENST00000640769	PPM1G	O15355	546 aa	Predicted RBP	11.35	□□□□□ -0.59
RTTN-222	ENST00000640769	VSIG10	Q8N0Z9	540 aa		11.32	□□□□□ -0.6
RTTN-222	ENST00000640769	TMC1	Q8TDI8	760 aa		11.32	□□□□□ -0.6
RTTN-222	ENST00000640769	SENP3-EIF4A1	A0A087X0R7	540 aa		11.32	□□□□□ -0.6
RTTN-222	ENST00000640769	NISCH	Q9Y2I1	1504 aa		11.31	□□□□□ -0.6
RTTN-222	ENST00000640769	SPRYD3	Q8NCJ5	442 aa		11.31	□□□□□ -0.6
RTTN-222	ENST00000640769	NOC3L	Q8WTT2	800 aa	Known RBP	11.3	□□□□□ -0.6
RTTN-222	ENST00000640769	HSP90AB1	P08238	724 aa	Known RBP	11.29	□□□□□ -0.6
RTTN-222	ENST00000640769	PTMS	P20962	102 aa		11.28	□□□□□ -0.6
RTTN-222	ENST00000640769	WDR43	Q15061	677 aa	Known RBP eCLIP	11.28	□□□□□ -0.6
RTTN-222	ENST00000640769	CLSTN1	O94985	981 aa		11.26	□□□□□ -0.61
RTTN-222	ENST00000640769	HSP90AA2P	Q14568	343 aa	Predicted RBP	11.26	□□□□□ -0.61
RTTN-222	ENST00000640769	PATL2	C9JE40	543 aa	Known RBP	11.26	□□□□□ -0.61
RTTN-222	ENST00000640769	L1TD1	Q5T7N2	865 aa	Known RBP	11.26	□□□□□ -0.61
RTTN-222	ENST00000640769	NRDC	O43847	1150 aa		11.26	□□□□□ -0.61
RTTN-222	ENST00000640769	CASC1	Q6TDU7	716 aa		11.25	□□□□□ -0.61
RTTN-222	ENST00000640769	SET	Q01105	290 aa	Predicted RBP	11.25	□□□□□ -0.61
RTTN-222	ENST00000640769		A0A0G2JS52	829 aa		11.24	□□□□□ -0.61
RTTN-222	ENST00000640769	MIER1	Q8N108	512 aa		11.24	□□□□□ -0.61
RTTN-222	ENST00000640769	APP	P05067	770 aa		11.24	□□□□□ -0.61
RTTN-222	ENST00000640769	GZF1	Q9H116	711 aa	Predicted RBP	11.23	□□□□□ -0.61
RTTN-222	ENST00000640769	PDE4C	Q08493	712 aa		11.23	□□□□□ -0.61
RTTN-222	ENST00000640769	MRS2	Q9HD23	443 aa		11.22	□□□□□ -0.61
RTTN-222	ENST00000640769	PRM3	Q9NNZ6	103 aa		11.22	□□□□□ -0.61
RTTN-222	ENST00000640769	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.22	□□□□□ -0.61
RTTN-222	ENST00000640769	GOLGA6L1	Q8N7Z2	621 aa		11.22	□□□□□ -0.61
RTTN-222	ENST00000640769	TIMELESS	Q9UNS1	1208 aa		11.22	□□□□□ -0.61
RTTN-222	ENST00000640769	PNN	Q9H307	717 aa	Known RBP	11.21	□□□□□ -0.61
RTTN-222	ENST00000640769	TAF7L	Q5H9L4	462 aa		11.21	□□□□□ -0.62
RTTN-222	ENST00000640769	CSRNP3	Q8WYN3	585 aa		11.21	□□□□□ -0.62
RTTN-222	ENST00000640769	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.21	□□□□□ -0.62
RTTN-222	ENST00000640769	RGS3	P49796	1198 aa		11.19	□□□□□ -0.62
RTTN-222	ENST00000640769	HIRIP3	Q9BW71	556 aa	Predicted RBP	11.18	□□□□□ -0.62
RTTN-222	ENST00000640769	FBXO3	Q9UK99	471 aa		11.18	□□□□□ -0.62
RTTN-222	ENST00000640769	PLPPR3	Q6T4P5	718 aa		11.18	□□□□□ -0.62
RTTN-222	ENST00000640769	PLEKHG5	O94827	1062 aa		11.17	□□□□□ -0.62
RTTN-222	ENST00000640769	TONSL	Q96HA7	1378 aa		11.17	□□□□□ -0.62
RTTN-222	ENST00000640769	ZNF771	Q7L3S4	317 aa	Predicted RBP	11.16	□□□□□ -0.62
RTTN-222	ENST00000640769	PODXL2	Q9NZ53	605 aa		11.16	□□□□□ -0.62
RTTN-222	ENST00000640769	GOLGA6L4	A6NEF3	574 aa		11.16	□□□□□ -0.62
RTTN-222	ENST00000640769	ARID3C	A6NKF2	412 aa		11.16	□□□□□ -0.62
RTTN-222	ENST00000640769	KIAA2012	Q0VF49	1180 aa		11.16	□□□□□ -0.62
RTTN-222	ENST00000640769	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.16	□□□□□ -0.62
RTTN-222	ENST00000640769	CHGA	P10645	457 aa	Known RBP	11.14	□□□□□ -0.63
RTTN-222	ENST00000640769	FGD1	P98174	961 aa		11.13	□□□□□ -0.63
RTTN-222	ENST00000640769	HSCB	Q8IWL3	235 aa		11.13	□□□□□ -0.63
RTTN-222	ENST00000640769	FTSJ3	Q8IY81	847 aa	Known RBP	11.13	□□□□□ -0.63
RTTN-222	ENST00000640769	B4GALNT3	Q6L9W6	998 aa		11.1	□□□□□ -0.63
RTTN-222	ENST00000640769	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.09	□□□□□ -0.63
RTTN-222	ENST00000640769	SENP3	Q9H4L4	574 aa	Predicted RBP	11.08	□□□□□ -0.64
RTTN-222	ENST00000640769	KCNJ4	P48050	445 aa		11.08	□□□□□ -0.64
RTTN-222	ENST00000640769	RSPH6A	Q9H0K4	717 aa		11.07	□□□□□ -0.64
RTTN-222	ENST00000640769	PKNOX2	Q96KN3	472 aa		11.07	□□□□□ -0.64
RTTN-222	ENST00000640769	RBM19	Q9Y4C8	960 aa	Known RBP	11.07	□□□□□ -0.64
RTTN-222	ENST00000640769	STAG3	Q9UJ98	1225 aa		11.06	□□□□□ -0.64
RTTN-222	ENST00000640769	KDM2A	Q9Y2K7	1162 aa		11.04	□□□□□ -0.64
RTTN-222	ENST00000640769	P3H3	Q8IVL6	736 aa		11.04	□□□□□ -0.64
RTTN-222	ENST00000640769	USP35	Q9P2H5	1018 aa		11.04	□□□□□ -0.64
RTTN-222	ENST00000640769	GOLGA6L3	A6NEY3	463 aa		11.03	□□□□□ -0.64
RTTN-222	ENST00000640769	PPP4R2	Q9NY27	417 aa		11.03	□□□□□ -0.64
RTTN-222	ENST00000640769	GNL2	Q13823	731 aa	Known RBP	11.02	□□□□□ -0.65
RTTN-222	ENST00000640769	CREBRF	Q8IUR6	639 aa		11.02	□□□□□ -0.65
RTTN-222	ENST00000640769	FRAT1	Q92837	279 aa	Predicted RBP	11.02	□□□□□ -0.65
RTTN-222	ENST00000640769	SLK	Q9H2G2	1235 aa	Predicted RBP	11.02	□□□□□ -0.65
RTTN-222	ENST00000640769	OS9	Q13438	667 aa	Predicted RBP	11	□□□□□ -0.65
RTTN-222	ENST00000640769	CCAR2	Q8N163	923 aa	Known RBP	11	□□□□□ -0.65
RTTN-222	ENST00000640769	RRP12	Q5JTH9	1297 aa	Known RBP	11	□□□□□ -0.65
RTTN-222	ENST00000640769	C14orf37	Q86TY3	774 aa		10.98	□□□□□ -0.65
RTTN-222	ENST00000640769	GBP4	Q96PP9	640 aa		10.98	□□□□□ -0.65
RTTN-222	ENST00000640769	NEUROD2	Q15784	382 aa		10.97	□□□□□ -0.65
RTTN-222	ENST00000640769	BCL11B	Q9C0K0	894 aa	Predicted RBP	10.97	□□□□□ -0.65
RTTN-222	ENST00000640769	FAM13B	Q9NYF5	915 aa		10.97	□□□□□ -0.65
RTTN-222	ENST00000640769	ISY1	Q9ULR0	285 aa	Known RBP	10.96	□□□□□ -0.65
RTTN-222	ENST00000640769	MEX3C	Q5U5Q3	659 aa	Known RBP	10.96	□□□□□ -0.66
RTTN-222	ENST00000640769	PLCD4	Q9BRC7	762 aa		10.96	□□□□□ -0.66
RTTN-222	ENST00000640769	MAPK8IP2	Q13387	824 aa	Predicted RBP	10.95	□□□□□ -0.66
RTTN-222	ENST00000640769	HSP90B1	P14625	803 aa	Known RBP	10.95	□□□□□ -0.66
RTTN-222	ENST00000640769	TPM4	P67936	248 aa		10.95	□□□□□ -0.66
RTTN-222	ENST00000640769	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	10.95	□□□□□ -0.66
RTTN-222	ENST00000640769	FBLN2	P98095	1184 aa		10.95	□□□□□ -0.66
RTTN-222	ENST00000640769	MAP7D2	Q96T17	732 aa		10.95	□□□□□ -0.66
RTTN-222	ENST00000640769	ZNF592	Q92610	1267 aa		10.94	□□□□□ -0.66
RTTN-222	ENST00000640769	MCC	P23508	829 aa		10.94	□□□□□ -0.66
RTTN-222	ENST00000640769	FOXD4L1	Q9NU39	408 aa		10.94	□□□□□ -0.66
RTTN-222	ENST00000640769	SYAP1	Q96A49	352 aa	Predicted RBP	10.92	□□□□□ -0.66
RTTN-222	ENST00000640769	ESF1	Q9H501	851 aa	Known RBP	10.92	□□□□□ -0.66
RTTN-222	ENST00000640769	GOLGA2	Q08379	1002 aa		10.92	□□□□□ -0.66
RTTN-222	ENST00000640769	TEX35	Q5T0J7	233 aa		10.92	□□□□□ -0.66
RTTN-222	ENST00000640769	NOM1	Q5C9Z4	860 aa	Known RBP	10.91	□□□□□ -0.66
RTTN-222	ENST00000640769	PRKCSH	P14314	528 aa	Predicted RBP	10.91	□□□□□ -0.66
RTTN-222	ENST00000640769	NPHP1	O15259	732 aa		10.9	□□□□□ -0.66
RTTN-222	ENST00000640769	FOXD4L5	Q5VV16	416 aa	Predicted RBP	10.9	□□□□□ -0.66
RTTN-222	ENST00000640769	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	10.9	□□□□□ -0.66
RTTN-222	ENST00000640769	TPM3	P06753	285 aa		10.89	□□□□□ -0.67
RTTN-222	ENST00000640769	DHX37	Q8IY37	1157 aa	Known RBP	10.89	□□□□□ -0.67
RTTN-222	ENST00000640769	GPS2	Q13227	327 aa		10.89	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms