RNA–Protein interactions for RNA: ENST00000640769.1

RTTN-222, Transcript of rotatin, human

APPRIS P1 TSL 2 BASIC

Gene RTTN, Length 8,088 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTTN-222	ENST00000640769	PELP1	Q8IZL8	1130 aa	Known RBP	14.39	□□□□□ -0.11
RTTN-222	ENST00000640769	ERICH6	Q7L0X2	663 aa		14.1	□□□□□ -0.15
RTTN-222	ENST00000640769	MYT1	Q01538	1121 aa		14.02	□□□□□ -0.17
RTTN-222	ENST00000640769	DCAF8L2	P0C7V8	631 aa		13.84	□□□□□ -0.19
RTTN-222	ENST00000640769	CCER1	Q8TC90	406 aa	Predicted RBP	13.71	□□□□□ -0.21
RTTN-222	ENST00000640769	EHMT2	Q96KQ7	1210 aa		13.67	□□□□□ -0.22
RTTN-222	ENST00000640769	CENPB	P07199	599 aa	Predicted RBP	13.49	□□□□□ -0.25
RTTN-222	ENST00000640769	SUPT5H	O00267	1087 aa	Known RBP	13.39	□□□□□ -0.27
RTTN-222	ENST00000640769	YTHDC1	Q96MU7	727 aa	Known RBP	13.34	□□□□□ -0.27
RTTN-222	ENST00000640769	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.34	□□□□□ -0.27
RTTN-222	ENST00000640769	NEFL	P07196	543 aa		13.25	□□□□□ -0.29
RTTN-222	ENST00000640769	PCGF6	Q9BYE7	350 aa		13.23	□□□□□ -0.29
RTTN-222	ENST00000640769	DAXX	Q9UER7	740 aa	Predicted RBP	13.17	□□□□□ -0.3
RTTN-222	ENST00000640769	APLP2	Q06481	763 aa		13.1	□□□□□ -0.31
RTTN-222	ENST00000640769	RTL5	Q5HYW3	569 aa	Predicted RBP	12.93	□□□□□ -0.34
RTTN-222	ENST00000640769	ZEB1	P37275	1124 aa	Predicted RBP	12.9	□□□□□ -0.34
RTTN-222	ENST00000640769	SHROOM4	Q9ULL8	1493 aa		12.88	□□□□□ -0.35
RTTN-222	ENST00000640769	ZNF316	A6NFI3	1004 aa	Predicted RBP	12.86	□□□□□ -0.35
RTTN-222	ENST00000640769	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.83	□□□□□ -0.36
RTTN-222	ENST00000640769	RANGAP1	P46060	587 aa	Predicted RBP	12.79	□□□□□ -0.36
RTTN-222	ENST00000640769	EIF5B	O60841	1220 aa	Known RBP	12.76	□□□□□ -0.37
RTTN-222	ENST00000640769	ATP1B4	Q9UN42	357 aa	Predicted RBP	12.67	□□□□□ -0.38
RTTN-222	ENST00000640769	CNGB1	Q14028	1251 aa	Predicted RBP	12.65	□□□□□ -0.38
RTTN-222	ENST00000640769	CLSPN	Q9HAW4	1339 aa		12.64	□□□□□ -0.39
RTTN-222	ENST00000640769	POLR3GL	Q9BT43	218 aa		12.62	□□□□□ -0.39
RTTN-222	ENST00000640769	GLIPR1L2	Q4G1C9	344 aa		12.54	□□□□□ -0.4
RTTN-222	ENST00000640769	PPARGC1B	Q86YN6	1023 aa	Known RBP	12.54	□□□□□ -0.4
RTTN-222	ENST00000640769	BCAN	Q96GW7	911 aa		12.52	□□□□□ -0.41
RTTN-222	ENST00000640769	HRC	P23327	699 aa		12.47	□□□□□ -0.41
RTTN-222	ENST00000640769	GTF3C3	Q9Y5Q9	886 aa		12.39	□□□□□ -0.43
RTTN-222	ENST00000640769	BCL11A	Q9H165	835 aa		12.36	□□□□□ -0.43
RTTN-222	ENST00000640769	CDK11A	Q9UQ88	783 aa	Predicted RBP	12.35	□□□□□ -0.43
RTTN-222	ENST00000640769	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.34	□□□□□ -0.43
RTTN-222	ENST00000640769	UBTF	P17480	764 aa	Known RBP	12.28	□□□□□ -0.44
RTTN-222	ENST00000640769	DIEXF	Q68CQ4	756 aa	Known RBP	12.27	□□□□□ -0.44
RTTN-222	ENST00000640769	NPM2	Q86SE8	214 aa	Known RBP	12.26	□□□□□ -0.45
RTTN-222	ENST00000640769	ITGAE	P38570	1179 aa		12.26	□□□□□ -0.45
RTTN-222	ENST00000640769	ARX	Q96QS3	562 aa		12.23	□□□□□ -0.45
RTTN-222	ENST00000640769	CHIC1	Q5VXU3	224 aa		12.23	□□□□□ -0.45
RTTN-222	ENST00000640769	TRIM26	Q12899	539 aa	Predicted RBP	12.22	□□□□□ -0.45
RTTN-222	ENST00000640769	ANP32B	Q92688	251 aa	Known RBP	12.22	□□□□□ -0.45
RTTN-222	ENST00000640769	NBR1	Q14596	966 aa		12.21	□□□□□ -0.45
RTTN-222	ENST00000640769	ANP32A	P39687	249 aa	Known RBP	12.2	□□□□□ -0.46
RTTN-222	ENST00000640769	TRIM41	Q8WV44	630 aa		12.19	□□□□□ -0.46
RTTN-222	ENST00000640769	AMER1	Q5JTC6	1135 aa	Predicted RBP	12.16	□□□□□ -0.46
RTTN-222	ENST00000640769	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.15	□□□□□ -0.46
RTTN-222	ENST00000640769	MYT1L	Q9UL68	1186 aa		12.13	□□□□□ -0.47
RTTN-222	ENST00000640769	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.08	□□□□□ -0.48
RTTN-222	ENST00000640769	SLC24A1	O60721	1099 aa		12.06	□□□□□ -0.48
RTTN-222	ENST00000640769	CANX	P27824	592 aa	Known RBP	12.05	□□□□□ -0.48
RTTN-222	ENST00000640769	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.04	□□□□□ -0.48
RTTN-222	ENST00000640769	HSP90AA1	P07900	732 aa	Known RBP	12.03	□□□□□ -0.48
RTTN-222	ENST00000640769	TNNT2	P45379	298 aa	Predicted RBP	12.03	□□□□□ -0.48
RTTN-222	ENST00000640769	CDK11B	P21127	795 aa	Known RBP	11.97	□□□□□ -0.49
RTTN-222	ENST00000640769	RTN4	Q9NQC3	1192 aa	Known RBP	11.97	□□□□□ -0.49
RTTN-222	ENST00000640769	ACIN1	Q9UKV3	1341 aa	Known RBP	11.93	□□□□□ -0.5
RTTN-222	ENST00000640769	ANP32C	O43423	234 aa		11.91	□□□□□ -0.5
RTTN-222	ENST00000640769	NEUROD1	Q13562	356 aa		11.89	□□□□□ -0.51
RTTN-222	ENST00000640769	FKBP8	Q14318	412 aa		11.88	□□□□□ -0.51
RTTN-222	ENST00000640769	NAP1L5	Q96NT1	182 aa	Predicted RBP	11.86	□□□□□ -0.51
RTTN-222	ENST00000640769	TRIM44	Q96DX7	344 aa	Predicted RBP	11.84	□□□□□ -0.51
RTTN-222	ENST00000640769	LOC105371045	A0A1W2PR82	267 aa		11.82	□□□□□ -0.52
RTTN-222	ENST00000640769	UPF2	Q9HAU5	1272 aa	Known RBP	11.81	□□□□□ -0.52
RTTN-222	ENST00000640769	DNTTIP2	Q5QJE6	756 aa	Known RBP	11.79	□□□□□ -0.52
RTTN-222	ENST00000640769	ZNF326	Q5BKZ1	582 aa	Known RBP	11.78	□□□□□ -0.52
RTTN-222	ENST00000640769	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.74	□□□□□ -0.53
RTTN-222	ENST00000640769	TPRN	Q4KMQ1	711 aa		11.73	□□□□□ -0.53
RTTN-222	ENST00000640769	TRIM52	Q96A61	297 aa		11.72	□□□□□ -0.53
RTTN-222	ENST00000640769	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.71	□□□□□ -0.53
RTTN-222	ENST00000640769	FAM50A	Q14320	339 aa	Known RBP	11.71	□□□□□ -0.53
RTTN-222	ENST00000640769	PTMA	P06454	111 aa	Known RBP	11.7	□□□□□ -0.54
RTTN-222	ENST00000640769	ARID3A	Q99856	593 aa		11.67	□□□□□ -0.54
RTTN-222	ENST00000640769	ANP32E	Q9BTT0	268 aa		11.66	□□□□□ -0.54
RTTN-222	ENST00000640769	NCL	P19338	710 aa	Known RBP	11.66	□□□□□ -0.54
RTTN-222	ENST00000640769	NEFM	P07197	916 aa		11.65	□□□□□ -0.54
RTTN-222	ENST00000640769	TULP1	O00294	542 aa	Predicted RBP	11.65	□□□□□ -0.54
RTTN-222	ENST00000640769	SALL2	Q9Y467	1007 aa	Predicted RBP	11.64	□□□□□ -0.55
RTTN-222	ENST00000640769	SCAF1	Q9H7N4	1312 aa	Known RBP	11.64	□□□□□ -0.55
RTTN-222	ENST00000640769	IRX6	P78412	446 aa	Predicted RBP	11.64	□□□□□ -0.55
RTTN-222	ENST00000640769	CCDC136	Q96JN2	1154 aa		11.62	□□□□□ -0.55
RTTN-222	ENST00000640769	ERICH6B	Q5W0A0	696 aa		11.61	□□□□□ -0.55
RTTN-222	ENST00000640769	HNRNPU	Q00839	825 aa	Known RBP eCLIP	11.57	□□□□□ -0.56
RTTN-222	ENST00000640769	ZBTB7C	A1YPR0	619 aa		11.57	□□□□□ -0.56
RTTN-222	ENST00000640769	FAM9B	Q8IZU0	186 aa		11.56	□□□□□ -0.56
RTTN-222	ENST00000640769	PLCB2	Q00722	1185 aa		11.55	□□□□□ -0.56
RTTN-222	ENST00000640769	LAS1L	Q9Y4W2	734 aa	Known RBP	11.55	□□□□□ -0.56
RTTN-222	ENST00000640769	TNNT3	P45378	269 aa	Predicted RBP	11.55	□□□□□ -0.56
RTTN-222	ENST00000640769	NCBP3	Q53F19	620 aa	Known RBP	11.52	□□□□□ -0.56
RTTN-222	ENST00000640769	DDRGK1	Q96HY6	314 aa		11.52	□□□□□ -0.57
RTTN-222	ENST00000640769	BECN1	Q14457	450 aa		11.52	□□□□□ -0.57
RTTN-222	ENST00000640769	GOLGA6L22	H0YM25	854 aa		11.5	□□□□□ -0.57
RTTN-222	ENST00000640769	ZRSR1	Q15695	479 aa	Known RBP	11.49	□□□□□ -0.57
RTTN-222	ENST00000640769	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	11.47	□□□□□ -0.57
RTTN-222	ENST00000640769	DEK	P35659	375 aa	Known RBP	11.47	□□□□□ -0.57
RTTN-222	ENST00000640769	TAOK2	Q9UL54	1235 aa		11.46	□□□□□ -0.57
RTTN-222	ENST00000640769	CALR	P27797	417 aa	Known RBP	11.46	□□□□□ -0.57
RTTN-222	ENST00000640769	CHAF1A	Q13111	956 aa	Predicted RBP	11.43	□□□□□ -0.58
RTTN-222	ENST00000640769	MSN	P26038	577 aa	Known RBP	11.43	□□□□□ -0.58
RTTN-222	ENST00000640769	NOP58	Q9Y2X3	529 aa	Known RBP	11.38	□□□□□ -0.59
RTTN-222	ENST00000640769	GOLGA6L6	A8MZA4	724 aa		11.38	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms