RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 NESP48681 1621 aa21.77■■□□□ 1.07
CLN3-253ENST00000636977 RAB3GAP2Q9H2M9 1393 aa21.76■■□□□ 1.07
CLN3-253ENST00000636977 PHLDB1Q86UU1 1377 aa21.75■■□□□ 1.07
CLN3-253ENST00000636977 LRRC9Q6ZRR7 1453 aa21.73■■□□□ 1.07
CLN3-253ENST00000636977 FAM50AQ14320 339 aaKnown RBP21.7■■□□□ 1.06
CLN3-253ENST00000636977 FHOD3Q2V2M9 1422 aa21.7■■□□□ 1.06
CLN3-253ENST00000636977 POLA1P09884 1462 aaPredicted RBP21.69■■□□□ 1.06
CLN3-253ENST00000636977 PCF11O94913 1555 aaKnown RBP21.68■■□□□ 1.06
CLN3-253ENST00000636977 MAP3K1Q13233 1512 aa21.68■■□□□ 1.06
CLN3-253ENST00000636977 TOPBP1Q92547 1522 aa21.67■■□□□ 1.06
CLN3-253ENST00000636977 MAPKBP1O60336 1514 aa21.66■■□□□ 1.06
CLN3-253ENST00000636977 DNMBPQ6XZF7 1577 aa21.66■■□□□ 1.06
CLN3-253ENST00000636977 ABCA10Q8WWZ4 1543 aa21.64■■□□□ 1.05
CLN3-253ENST00000636977 FHAD1B1AJZ9 1412 aa21.63■■□□□ 1.05
CLN3-253ENST00000636977 SETD5Q9C0A6 1442 aa21.62■■□□□ 1.05
CLN3-253ENST00000636977 SIN3AQ96ST3 1273 aa21.61■■□□□ 1.05
CLN3-253ENST00000636977 CFAP43Q8NDM7 1665 aa21.58■■□□□ 1.05
CLN3-253ENST00000636977 DNAJC5BQ9UF47 199 aa21.57■■□□□ 1.04
CLN3-253ENST00000636977 TDRD9Q8NDG6 1382 aaKnown RBP21.54■■□□□ 1.04
CLN3-253ENST00000636977 URB2Q14146 1524 aaKnown RBP21.53■■□□□ 1.04
CLN3-253ENST00000636977 CASKIN1Q8WXD9 1431 aa21.5■■□□□ 1.03
CLN3-253ENST00000636977 FYCO1Q9BQS8 1478 aa21.5■■□□□ 1.03
CLN3-253ENST00000636977 KCNH8Q96L42 1107 aa21.5■■□□□ 1.03
CLN3-253ENST00000636977 WDR97A6NE52 1622 aa21.47■■□□□ 1.03
CLN3-253ENST00000636977 CUL7Q14999 1698 aa21.47■■□□□ 1.03
CLN3-253ENST00000636977 EFCAB5A4FU69 1503 aa21.47■■□□□ 1.03
CLN3-253ENST00000636977 CTTNBP2Q8WZ74 1663 aa21.47■■□□□ 1.03
CLN3-253ENST00000636977 BCL11AQ9H165 835 aa21.44■■□□□ 1.02
CLN3-253ENST00000636977 HIRIP3Q9BW71 556 aaPredicted RBP21.43■■□□□ 1.02
CLN3-253ENST00000636977 AQRO60306 1485 aaKnown RBP eCLIP21.42■■□□□ 1.026e-6■■■■□ 25.1
CLN3-253ENST00000636977 SNAPC4Q5SXM2 1469 aa21.42■■□□□ 1.02
CLN3-253ENST00000636977 FMN1Q68DA7 1419 aa21.39■■□□□ 1.01
CLN3-253ENST00000636977 DDX10Q13206 875 aaKnown RBP21.39■■□□□ 1.01
CLN3-253ENST00000636977 FGD6Q6ZV73 1430 aa21.39■■□□□ 1.01
CLN3-253ENST00000636977 LAMC3Q9Y6N6 1575 aa21.38■■□□□ 1.01
CLN3-253ENST00000636977 GAPVD1Q14C86 1478 aa21.38■■□□□ 1.01
CLN3-253ENST00000636977 PTPRKQ15262 1439 aa21.38■■□□□ 1.01
CLN3-253ENST00000636977 MTUS2Q5JR59 1369 aa21.38■■□□□ 1.01
CLN3-253ENST00000636977 ABCA5Q8WWZ7 1642 aa21.37■■□□□ 1.01
CLN3-253ENST00000636977 LRRIQ1Q96JM4 1722 aa21.36■■□□□ 1.01
CLN3-253ENST00000636977 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.32■■□□□ 1
CLN3-253ENST00000636977 SAMD9Q5K651 1589 aa21.32■■□□□ 1
CLN3-253ENST00000636977 PPP1R15AO75807 674 aaPredicted RBP21.31■■□□□ 1
CLN3-253ENST00000636977 SUPT16HQ9Y5B9 1047 aaKnown RBP21.3■■□□□ 1
CLN3-253ENST00000636977 GRIN2BQ13224 1484 aa21.29■■□□□ 1
CLN3-253ENST00000636977 KIF21AQ7Z4S6 1674 aa21.29■■□□□ 1
CLN3-253ENST00000636977 NCOA2Q15596 1464 aa21.28■■□□□ 1
CLN3-253ENST00000636977 PDS5BQ9NTI5 1447 aa21.28■■□□□ 1
CLN3-253ENST00000636977 CCDC18Q5T9S5 1454 aa21.27■■□□□ 1
CLN3-253ENST00000636977 ARID3CA6NKF2 412 aa21.23■□□□□ 0.99
CLN3-253ENST00000636977 MAGI3Q5TCQ9 1506 aa21.23■□□□□ 0.99
CLN3-253ENST00000636977 MYOM3Q5VTT5 1437 aa21.23■□□□□ 0.99
CLN3-253ENST00000636977 HFM1A2PYH4 1435 aa21.22■□□□□ 0.99
CLN3-253ENST00000636977 TIMELESSQ9UNS1 1208 aa21.22■□□□□ 0.99
CLN3-253ENST00000636977 PTPN23Q9H3S7 1636 aa21.21■□□□□ 0.99
CLN3-253ENST00000636977 NAIPQ13075 1403 aa21.21■□□□□ 0.99
CLN3-253ENST00000636977 TARBP1Q13395 1621 aaKnown RBP21.21■□□□□ 0.99
CLN3-253ENST00000636977 CHIC2Q9UKJ5 165 aa21.2■□□□□ 0.98
CLN3-253ENST00000636977 RRP7BPQ9NSQ0 103 aa21.19■□□□□ 0.98
CLN3-253ENST00000636977 TONSLQ96HA7 1378 aa21.19■□□□□ 0.98
CLN3-253ENST00000636977 UACAQ9BZF9 1416 aa21.18■□□□□ 0.98
CLN3-253ENST00000636977 SUPT6HQ7KZ85 1726 aaKnown RBP21.16■□□□□ 0.98
CLN3-253ENST00000636977 EHBP1L1Q8N3D4 1523 aa21.14■□□□□ 0.98
CLN3-253ENST00000636977 UGGT2Q9NYU1 1516 aa21.14■□□□□ 0.97
CLN3-253ENST00000636977 THOC2Q8NI27 1593 aaKnown RBP21.11■□□□□ 0.97
CLN3-253ENST00000636977 ARHGEF11O15085 1522 aa21.1■□□□□ 0.97
CLN3-253ENST00000636977 CDK13Q14004 1512 aaKnown RBP21.1■□□□□ 0.97
CLN3-253ENST00000636977 PBRM1Q86U86 1689 aa21.09■□□□□ 0.97
CLN3-253ENST00000636977 KDM6BO15054 1643 aa21.06■□□□□ 0.96
CLN3-253ENST00000636977 IQGAP2Q13576 1575 aa21.06■□□□□ 0.96
CLN3-253ENST00000636977 EPRSP07814 1512 aaKnown RBP21.06■□□□□ 0.96
CLN3-253ENST00000636977 KDM5BQ9UGL1 1544 aa21.06■□□□□ 0.96
CLN3-253ENST00000636977 TRIM52Q96A61 297 aa21.06■□□□□ 0.96
CLN3-253ENST00000636977 BCANQ96GW7 911 aa21.05■□□□□ 0.96
CLN3-253ENST00000636977 DENND4BO75064 1496 aaPredicted RBP21.05■□□□□ 0.96
CLN3-253ENST00000636977 ANP32CO43423 234 aa21.04■□□□□ 0.96
CLN3-253ENST00000636977 PRKCSHP14314 528 aaPredicted RBP21.03■□□□□ 0.96
CLN3-253ENST00000636977 ADAMTS12P58397 1594 aa21.03■□□□□ 0.96
CLN3-253ENST00000636977 FOXD1Q16676 465 aa21.03■□□□□ 0.96
CLN3-253ENST00000636977 HECW1Q76N89 1606 aa21.02■□□□□ 0.96
CLN3-253ENST00000636977 ZNF608Q9ULD9 1512 aaPredicted RBP21.02■□□□□ 0.96
CLN3-253ENST00000636977 TCOF1Q13428 1488 aaKnown RBP21.01■□□□□ 0.95
CLN3-253ENST00000636977 WDR62O43379 1518 aa20.98■□□□□ 0.95
CLN3-253ENST00000636977 CCER2I3L3R5 266 aa20.97■□□□□ 0.95
CLN3-253ENST00000636977 FKBP8Q14318 412 aa20.97■□□□□ 0.95
CLN3-253ENST00000636977 MRC2Q9UBG0 1479 aa20.97■□□□□ 0.95
CLN3-253ENST00000636977 ZNF644Q9H582 1327 aaPredicted RBP20.95■□□□□ 0.94
CLN3-253ENST00000636977 MPHOSPH9Q99550 1183 aa20.94■□□□□ 0.94
CLN3-253ENST00000636977 GCC2Q8IWJ2 1684 aa20.94■□□□□ 0.94
CLN3-253ENST00000636977 TSHZ2Q9NRE2 1034 aa20.94■□□□□ 0.94
CLN3-253ENST00000636977 HSPA5P11021 654 aaKnown RBP20.94■□□□□ 0.94
CLN3-253ENST00000636977 ANP32EQ9BTT0 268 aa20.92■□□□□ 0.94
CLN3-253ENST00000636977 WASHC2AQ641Q2 1341 aa20.9■□□□□ 0.94
CLN3-253ENST00000636977 MIA2Q96PC5 1412 aa20.9■□□□□ 0.94
CLN3-253ENST00000636977 L3MBTL2Q969R5 705 aa20.89■□□□□ 0.94
CLN3-253ENST00000636977 DISP1Q96F81 1524 aa20.89■□□□□ 0.93
CLN3-253ENST00000636977 AKNAQ7Z591 1439 aa20.86■□□□□ 0.93
CLN3-253ENST00000636977 NUP153P49790 1475 aaKnown RBP20.85■□□□□ 0.93
CLN3-253ENST00000636977 DAPK1P53355 1430 aa20.84■□□□□ 0.93
CLN3-253ENST00000636977 IFT140Q96RY7 1462 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms