RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 PHLDB1Q86UU1 1377 aa18.74■□□□□ 0.59
CCDC88A-214ENST00000621814 FHOD3Q2V2M9 1422 aa18.73■□□□□ 0.59
CCDC88A-214ENST00000621814 SIN3AQ96ST3 1273 aa18.73■□□□□ 0.59
CCDC88A-214ENST00000621814 LRRC9Q6ZRR7 1453 aa18.69■□□□□ 0.58
CCDC88A-214ENST00000621814 TIAM1Q13009 1591 aa18.69■□□□□ 0.58
CCDC88A-214ENST00000621814 DNAJC5BQ9UF47 199 aa18.67■□□□□ 0.58
CCDC88A-214ENST00000621814 PRDM2Q13029 1718 aa18.67■□□□□ 0.58
CCDC88A-214ENST00000621814 FHAD1B1AJZ9 1412 aa18.66■□□□□ 0.58
CCDC88A-214ENST00000621814 TDRD9Q8NDG6 1382 aaKnown RBP18.65■□□□□ 0.58
CCDC88A-214ENST00000621814 HIRIP3Q9BW71 556 aaPredicted RBP18.65■□□□□ 0.58
CCDC88A-214ENST00000621814 SETD5Q9C0A6 1442 aa18.65■□□□□ 0.58
CCDC88A-214ENST00000621814 POLA1P09884 1462 aaPredicted RBP18.65■□□□□ 0.58
CCDC88A-214ENST00000621814 TOPBP1Q92547 1522 aa18.63■□□□□ 0.57
CCDC88A-214ENST00000621814 KCNH8Q96L42 1107 aa18.6■□□□□ 0.57
CCDC88A-214ENST00000621814 PCF11O94913 1555 aaKnown RBP18.6■□□□□ 0.57
CCDC88A-214ENST00000621814 DDX10Q13206 875 aaKnown RBP18.58■□□□□ 0.56
CCDC88A-214ENST00000621814 DNMBPQ6XZF7 1577 aa18.58■□□□□ 0.56
CCDC88A-214ENST00000621814 ARID3CA6NKF2 412 aa18.57■□□□□ 0.56
CCDC88A-214ENST00000621814 ABCA10Q8WWZ4 1543 aa18.56■□□□□ 0.56
CCDC88A-214ENST00000621814 MAPKBP1O60336 1514 aa18.55■□□□□ 0.56
CCDC88A-214ENST00000621814 MAP3K1Q13233 1512 aa18.54■□□□□ 0.56
CCDC88A-214ENST00000621814 MTUS2Q5JR59 1369 aa18.54■□□□□ 0.56
CCDC88A-214ENST00000621814 URB2Q14146 1524 aaKnown RBP18.49■□□□□ 0.55
CCDC88A-214ENST00000621814 CASKIN1Q8WXD9 1431 aa18.49■□□□□ 0.55
CCDC88A-214ENST00000621814 CHIC2Q9UKJ5 165 aa18.47■□□□□ 0.55
CCDC88A-214ENST00000621814 FYCO1Q9BQS8 1478 aa18.46■□□□□ 0.55
CCDC88A-214ENST00000621814 FMN1Q68DA7 1419 aa18.46■□□□□ 0.55
CCDC88A-214ENST00000621814 WDR97A6NE52 1622 aa18.45■□□□□ 0.54
CCDC88A-214ENST00000621814 GAPVD1Q14C86 1478 aa18.44■□□□□ 0.54
CCDC88A-214ENST00000621814 CFAP43Q8NDM7 1665 aa18.42■□□□□ 0.54
CCDC88A-214ENST00000621814 RRP7BPQ9NSQ0 103 aa18.42■□□□□ 0.54
CCDC88A-214ENST00000621814 FGD6Q6ZV73 1430 aa18.41■□□□□ 0.54
CCDC88A-214ENST00000621814 EFCAB5A4FU69 1503 aa18.41■□□□□ 0.54
CCDC88A-214ENST00000621814 PPP1R15AO75807 674 aaPredicted RBP18.41■□□□□ 0.54
CCDC88A-214ENST00000621814 SUPT16HQ9Y5B9 1047 aaKnown RBP18.4■□□□□ 0.54
CCDC88A-214ENST00000621814 PDS5BQ9NTI5 1447 aa18.39■□□□□ 0.53
CCDC88A-214ENST00000621814 TONSLQ96HA7 1378 aa18.39■□□□□ 0.53
CCDC88A-214ENST00000621814 CUL7Q14999 1698 aa18.38■□□□□ 0.53
CCDC88A-214ENST00000621814 TRIM52Q96A61 297 aa18.37■□□□□ 0.53
CCDC88A-214ENST00000621814 PTPRKQ15262 1439 aa18.37■□□□□ 0.53
CCDC88A-214ENST00000621814 SNAPC4Q5SXM2 1469 aa18.35■□□□□ 0.53
CCDC88A-214ENST00000621814 CTTNBP2Q8WZ74 1663 aa18.35■□□□□ 0.53
CCDC88A-214ENST00000621814 AQRO60306 1485 aaKnown RBP eCLIP18.34■□□□□ 0.53
CCDC88A-214ENST00000621814 BCANQ96GW7 911 aa18.34■□□□□ 0.53
CCDC88A-214ENST00000621814 LAMC3Q9Y6N6 1575 aa18.34■□□□□ 0.53
CCDC88A-214ENST00000621814 CCDC18Q5T9S5 1454 aa18.33■□□□□ 0.52
CCDC88A-214ENST00000621814 NCOA2Q15596 1464 aa18.33■□□□□ 0.52
CCDC88A-214ENST00000621814 TIMELESSQ9UNS1 1208 aa18.3■□□□□ 0.52
CCDC88A-214ENST00000621814 ANP32CO43423 234 aa18.3■□□□□ 0.52
CCDC88A-214ENST00000621814 MYOM3Q5VTT5 1437 aa18.28■□□□□ 0.52
CCDC88A-214ENST00000621814 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.28■□□□□ 0.521e-12■□□□□ 9.9
CCDC88A-214ENST00000621814 FOXD1Q16676 465 aa18.26■□□□□ 0.51
CCDC88A-214ENST00000621814 ABCA5Q8WWZ7 1642 aa18.26■□□□□ 0.51
CCDC88A-214ENST00000621814 GRIN2BQ13224 1484 aa18.25■□□□□ 0.51
CCDC88A-214ENST00000621814 HFM1A2PYH4 1435 aa18.25■□□□□ 0.51
CCDC88A-214ENST00000621814 NAIPQ13075 1403 aa18.24■□□□□ 0.51
CCDC88A-214ENST00000621814 UACAQ9BZF9 1416 aa18.23■□□□□ 0.51
CCDC88A-214ENST00000621814 KIF21AQ7Z4S6 1674 aa18.23■□□□□ 0.51
CCDC88A-214ENST00000621814 FKBP8Q14318 412 aa18.22■□□□□ 0.51
CCDC88A-214ENST00000621814 SAMD9Q5K651 1589 aa18.21■□□□□ 0.51
CCDC88A-214ENST00000621814 LRRIQ1Q96JM4 1722 aa18.2■□□□□ 0.5
CCDC88A-214ENST00000621814 FBLN2P98095 1184 aa18.19■□□□□ 0.5
CCDC88A-214ENST00000621814 MAGI3Q5TCQ9 1506 aa18.19■□□□□ 0.5
CCDC88A-214ENST00000621814 PTPN23Q9H3S7 1636 aa18.19■□□□□ 0.5
CCDC88A-214ENST00000621814 CDK13Q14004 1512 aaKnown RBP18.17■□□□□ 0.5
CCDC88A-214ENST00000621814 SUPT6HQ7KZ85 1726 aaKnown RBP18.16■□□□□ 0.5
CCDC88A-214ENST00000621814 EHBP1L1Q8N3D4 1523 aa18.15■□□□□ 0.5
CCDC88A-214ENST00000621814 ZNF644Q9H582 1327 aaPredicted RBP18.15■□□□□ 0.5
CCDC88A-214ENST00000621814 MPHOSPH9Q99550 1183 aa18.14■□□□□ 0.49
CCDC88A-214ENST00000621814 TARBP1Q13395 1621 aaKnown RBP18.13■□□□□ 0.49
CCDC88A-214ENST00000621814 EPRSP07814 1512 aaKnown RBP18.12■□□□□ 0.49
CCDC88A-214ENST00000621814 HSPA5P11021 654 aaKnown RBP18.12■□□□□ 0.49
CCDC88A-214ENST00000621814 ZNF777Q9ULD5 760 aaPredicted RBP18.12■□□□□ 0.49
CCDC88A-214ENST00000621814 UGGT2Q9NYU1 1516 aa18.11■□□□□ 0.49
CCDC88A-214ENST00000621814 ZNF608Q9ULD9 1512 aaPredicted RBP18.11■□□□□ 0.49
CCDC88A-214ENST00000621814 CNGB1Q14028 1251 aaPredicted RBP18.1■□□□□ 0.49
CCDC88A-214ENST00000621814 CCER2I3L3R5 266 aa18.1■□□□□ 0.49
CCDC88A-214ENST00000621814 NEFLP07196 543 aa18.1■□□□□ 0.49
CCDC88A-214ENST00000621814 IQGAP2Q13576 1575 aa18.1■□□□□ 0.49
CCDC88A-214ENST00000621814 L3MBTL2Q969R5 705 aa18.09■□□□□ 0.49
CCDC88A-214ENST00000621814 HNRNPUQ00839 825 aaKnown RBP eCLIP18.06■□□□□ 0.48
CCDC88A-214ENST00000621814 TSHZ2Q9NRE2 1034 aa18.06■□□□□ 0.48
CCDC88A-214ENST00000621814 MRC2Q9UBG0 1479 aa18.05■□□□□ 0.48
CCDC88A-214ENST00000621814 EIF4G2P78344 907 aaKnown RBP eCLIP18.05■□□□□ 0.48
CCDC88A-214ENST00000621814 SLC4A1APQ9BWU0 796 aaKnown RBP18.05■□□□□ 0.48
CCDC88A-214ENST00000621814 HECW1Q76N89 1606 aa18.05■□□□□ 0.48
CCDC88A-214ENST00000621814 THOC2Q8NI27 1593 aaKnown RBP18.05■□□□□ 0.48
CCDC88A-214ENST00000621814 CHMP7Q8WUX9 453 aaPredicted RBP18.05■□□□□ 0.48
CCDC88A-214ENST00000621814 WASHC2AQ641Q2 1341 aa18.05■□□□□ 0.48
CCDC88A-214ENST00000621814 KDM6BO15054 1643 aa18.04■□□□□ 0.48
CCDC88A-214ENST00000621814 PBRM1Q86U86 1689 aa18.04■□□□□ 0.48
CCDC88A-214ENST00000621814 ZNF326Q5BKZ1 582 aaKnown RBP18.02■□□□□ 0.48
CCDC88A-214ENST00000621814 CDK11AQ9UQ88 783 aaPredicted RBP18.02■□□□□ 0.48
CCDC88A-214ENST00000621814 POLR3GLQ9BT43 218 aa18.02■□□□□ 0.47
CCDC88A-214ENST00000621814 ARHGEF11O15085 1522 aa18.01■□□□□ 0.47
CCDC88A-214ENST00000621814 ADAMTS12P58397 1594 aa18.01■□□□□ 0.47
CCDC88A-214ENST00000621814 IRX6P78412 446 aaPredicted RBP18■□□□□ 0.47
CCDC88A-214ENST00000621814 CFDP1Q9UEE9 299 aaPredicted RBP18■□□□□ 0.47
CCDC88A-214ENST00000621814 DENND4BO75064 1496 aaPredicted RBP17.99■□□□□ 0.47
CCDC88A-214ENST00000621814 C11orf95C9JLR9 678 aaPredicted RBP17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms