RNA–Protein interactions for RNA: ENST00000620502.4

BRCC3-209, Transcript of BRCA1/BRCA2-containing complex subunit 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene BRCC3, Length 882 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3-209ENST00000620502 THOC2Q8NI27 1593 aaKnown RBP11.77□□□□□ -0.53
BRCC3-209ENST00000620502 SUPT5HO00267 1087 aaKnown RBP11.76□□□□□ -0.53
BRCC3-209ENST00000620502 CUX2O14529 1486 aa11.76□□□□□ -0.53
BRCC3-209ENST00000620502 PROM2Q8N271 834 aa11.74□□□□□ -0.53
BRCC3-209ENST00000620502 PRDM2Q13029 1718 aa11.74□□□□□ -0.53
BRCC3-209ENST00000620502 FANCD2Q9BXW9 1451 aa11.73□□□□□ -0.53
BRCC3-209ENST00000620502 CEP164Q9UPV0 1460 aa11.7□□□□□ -0.54
BRCC3-209ENST00000620502 MRC2Q9UBG0 1479 aa11.7□□□□□ -0.54
BRCC3-209ENST00000620502 WDR62O43379 1518 aa11.67□□□□□ -0.54
BRCC3-209ENST00000620502 PITPNM1O00562 1244 aa11.66□□□□□ -0.54
BRCC3-209ENST00000620502 SPDYE1Q8NFV5 336 aaPredicted RBP11.65□□□□□ -0.54
BRCC3-209ENST00000620502 URB2Q14146 1524 aaKnown RBP11.64□□□□□ -0.55
BRCC3-209ENST00000620502 CHRDL2Q6WN34 429 aa11.6□□□□□ -0.55
BRCC3-209ENST00000620502 CLEC11AQ9Y240 323 aa11.58□□□□□ -0.56
BRCC3-209ENST00000620502 TOPBP1Q92547 1522 aa11.55□□□□□ -0.56
BRCC3-209ENST00000620502 STAG3Q9UJ98 1225 aa11.55□□□□□ -0.56
BRCC3-209ENST00000620502 ABCC8Q09428 1581 aa11.54□□□□□ -0.56
BRCC3-209ENST00000620502 DNMBPQ6XZF7 1577 aa11.54□□□□□ -0.56
BRCC3-209ENST00000620502 PRR29P0C7W0 189 aa11.48□□□□□ -0.57
BRCC3-209ENST00000620502 FXR2P51116 673 aaKnown RBP eCLIP11.48□□□□□ -0.57
BRCC3-209ENST00000620502 CUX1P39880 1505 aa11.48□□□□□ -0.57
BRCC3-209ENST00000620502 IFT140Q96RY7 1462 aa11.47□□□□□ -0.57
BRCC3-209ENST00000620502 POLA1P09884 1462 aaPredicted RBP11.45□□□□□ -0.58
BRCC3-209ENST00000620502 TARBP1Q13395 1621 aaKnown RBP11.45□□□□□ -0.58
BRCC3-209ENST00000620502 PIP4P2Q8N4L2 257 aa11.44□□□□□ -0.58
BRCC3-209ENST00000620502 ZNF608Q9ULD9 1512 aaPredicted RBP11.44□□□□□ -0.58
BRCC3-209ENST00000620502 FGD5Q6ZNL6 1462 aa11.43□□□□□ -0.58
BRCC3-209ENST00000620502 DNAJC5Q9H3Z4 198 aa11.42□□□□□ -0.58
BRCC3-209ENST00000620502 FBXO3Q9UK99 471 aa11.42□□□□□ -0.58
BRCC3-209ENST00000620502 RAD54L2Q9Y4B4 1467 aa11.41□□□□□ -0.58
BRCC3-209ENST00000620502 SOGA1O94964 1423 aa11.41□□□□□ -0.58
BRCC3-209ENST00000620502 BIVM-ERCC5R4GMW8 1640 aa11.38□□□□□ -0.59
BRCC3-209ENST00000620502 SYNJ1O43426 1573 aa11.38□□□□□ -0.59
BRCC3-209ENST00000620502 EIF4G3O43432 1585 aaKnown RBP11.38□□□□□ -0.59
BRCC3-209ENST00000620502 WRNQ14191 1432 aaPredicted RBP eCLIP11.38□□□□□ -0.59
BRCC3-209ENST00000620502 TOP2BQ02880 1626 aa11.38□□□□□ -0.59
BRCC3-209ENST00000620502 AQRO60306 1485 aaKnown RBP eCLIP11.38□□□□□ -0.593e-7■■■□□ 19
BRCC3-209ENST00000620502 WDR97A6NE52 1622 aa11.35□□□□□ -0.59
BRCC3-209ENST00000620502 PRKAR2AP13861 404 aaKnown RBP11.35□□□□□ -0.59
BRCC3-209ENST00000620502 CREBZFQ9NS37 354 aa11.35□□□□□ -0.59
BRCC3-209ENST00000620502 TDRD9Q8NDG6 1382 aaKnown RBP11.35□□□□□ -0.59
BRCC3-209ENST00000620502 CHADLQ6NUI6 762 aa11.33□□□□□ -0.6
BRCC3-209ENST00000620502 ABCA10Q8WWZ4 1543 aa11.31□□□□□ -0.6
BRCC3-209ENST00000620502 ABCA5Q8WWZ7 1642 aa11.28□□□□□ -0.6
BRCC3-209ENST00000620502 VASPP50552 380 aaPredicted RBP11.27□□□□□ -0.61
BRCC3-209ENST00000620502 MIER1Q8N108 512 aa11.27□□□□□ -0.61
BRCC3-209ENST00000620502 PBRM1Q86U86 1689 aa11.27□□□□□ -0.61
BRCC3-209ENST00000620502 GRIN2BQ13224 1484 aa11.26□□□□□ -0.61
BRCC3-209ENST00000620502 GAPVD1Q14C86 1478 aa11.26□□□□□ -0.61
BRCC3-209ENST00000620502 CHD1O14646 1710 aa11.26□□□□□ -0.61
BRCC3-209ENST00000620502 SNAPC4Q5SXM2 1469 aa11.25□□□□□ -0.61
BRCC3-209ENST00000620502 MNX1P50219 401 aaPredicted RBP11.24□□□□□ -0.61
BRCC3-209ENST00000620502 PLCD3Q8N3E9 789 aa11.23□□□□□ -0.61
BRCC3-209ENST00000620502 FARP1Q9Y4F1 1045 aaPredicted RBP11.23□□□□□ -0.61
BRCC3-209ENST00000620502 MAGI1Q96QZ7 1491 aaPredicted RBP11.23□□□□□ -0.61
BRCC3-209ENST00000620502 PLEKHG5O94827 1062 aa11.2□□□□□ -0.62
BRCC3-209ENST00000620502 SYNJ2O15056 1496 aa11.19□□□□□ -0.62
BRCC3-209ENST00000620502 CHMP7Q8WUX9 453 aaPredicted RBP11.18□□□□□ -0.62
BRCC3-209ENST00000620502 ERICH3Q5RHP9 1530 aa11.18□□□□□ -0.62
BRCC3-209ENST00000620502 ADAMTS12P58397 1594 aa11.16□□□□□ -0.62
BRCC3-209ENST00000620502 IFNLR1Q8IU57 520 aaPredicted RBP11.14□□□□□ -0.63
BRCC3-209ENST00000620502 FHAD1B1AJZ9 1412 aa11.13□□□□□ -0.63
BRCC3-209ENST00000620502 KIF27Q86VH2 1401 aa11.13□□□□□ -0.63
BRCC3-209ENST00000620502 ZBTB47Q9UFB7 747 aaPredicted RBP11.13□□□□□ -0.63
BRCC3-209ENST00000620502 CLASP1Q7Z460 1538 aa11.13□□□□□ -0.63
BRCC3-209ENST00000620502 IGF1RP08069 1367 aa11.13□□□□□ -0.63
BRCC3-209ENST00000620502 GRIN2AQ12879 1464 aa11.12□□□□□ -0.63
BRCC3-209ENST00000620502 NPM1P06748 294 aaKnown RBP eCLIP11.12□□□□□ -0.63
BRCC3-209ENST00000620502 RIMBP3CA6NJZ7 1639 aa11.11□□□□□ -0.63
BRCC3-209ENST00000620502 RIMBP3BA6NNM3 1639 aa11.11□□□□□ -0.63
BRCC3-209ENST00000620502 RIMBP3Q9UFD9 1639 aa11.11□□□□□ -0.63
BRCC3-209ENST00000620502 TRIM41Q8WV44 630 aa11.11□□□□□ -0.63
BRCC3-209ENST00000620502 ARHGEF11O15085 1522 aa11.09□□□□□ -0.63
BRCC3-209ENST00000620502 C19orf67A6NJJ6 358 aa11.09□□□□□ -0.63
BRCC3-209ENST00000620502 RUSC2Q8N2Y8 1516 aa11.09□□□□□ -0.63
BRCC3-209ENST00000620502 CEP170Q5SW79 1584 aa11.08□□□□□ -0.64
BRCC3-209ENST00000620502 NUP160Q12769 1436 aa11.08□□□□□ -0.64
BRCC3-209ENST00000620502 CUL7Q14999 1698 aa11.08□□□□□ -0.64
BRCC3-209ENST00000620502 HAX1O00165 279 aa11.07□□□□□ -0.64
BRCC3-209ENST00000620502 KLHL34Q8N239 644 aa11.07□□□□□ -0.64
BRCC3-209ENST00000620502 NUBP1P53384 320 aa11.04□□□□□ -0.64
BRCC3-209ENST00000620502 CARMIL1Q5VZK9 1371 aa11.03□□□□□ -0.64
BRCC3-209ENST00000620502 EVX2Q03828 476 aa11.03□□□□□ -0.64
BRCC3-209ENST00000620502 CD44P16070 742 aaKnown RBP11.02□□□□□ -0.65
BRCC3-209ENST00000620502 SHROOM2Q13796 1616 aa11.02□□□□□ -0.65
BRCC3-209ENST00000620502 RASEFQ8IZ41 740 aa11.01□□□□□ -0.65
BRCC3-209ENST00000620502 ARAP1Q96P48 1450 aa11□□□□□ -0.65
BRCC3-209ENST00000620502 CYB5RLQ6IPT4 315 aa10.99□□□□□ -0.65
BRCC3-209ENST00000620502 SPOCK2Q92563 424 aa10.99□□□□□ -0.65
BRCC3-209ENST00000620502 ERCC6L2Q5T890 1561 aa10.99□□□□□ -0.65
BRCC3-209ENST00000620502 JPH4Q96JJ6 628 aa10.97□□□□□ -0.65
BRCC3-209ENST00000620502 RAPGEF2Q9Y4G8 1499 aa10.97□□□□□ -0.65
BRCC3-209ENST00000620502 KIAA0586Q9BVV6 1533 aa10.97□□□□□ -0.65
BRCC3-209ENST00000620502 PRXQ9BXM0 1461 aa10.94□□□□□ -0.66
BRCC3-209ENST00000620502 PRG4Q92954 1404 aaPredicted RBP10.94□□□□□ -0.66
BRCC3-209ENST00000620502 ZRANB1Q9UGI0 708 aa10.94□□□□□ -0.66
BRCC3-209ENST00000620502 PAK3O75914 559 aaPredicted RBP10.93□□□□□ -0.66
BRCC3-209ENST00000620502 TSPYL2Q9H2G4 693 aaPredicted RBP10.93□□□□□ -0.66
BRCC3-209ENST00000620502 EEA1Q15075 1411 aa10.92□□□□□ -0.66
BRCC3-209ENST00000620502 FAM212AQ96EL1 285 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms