RNA–Protein interactions for RNA: ENST00000620502.4

BRCC3-209, Transcript of BRCA1/BRCA2-containing complex subunit 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene BRCC3, Length 882 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3-209ENST00000620502 AEBP2Q6ZN18 517 aaPredicted RBP21.42■■□□□ 1.02
BRCC3-209ENST00000620502 CHIC1Q5VXU3 224 aa20.82■□□□□ 0.92
BRCC3-209ENST00000620502 PHF23Q9BUL5 403 aaPredicted RBP18.32■□□□□ 0.52
BRCC3-209ENST00000620502 SENP3Q9H4L4 574 aaPredicted RBP18.16■□□□□ 0.5
BRCC3-209ENST00000620502 FOXD1Q16676 465 aa16.89■□□□□ 0.29
BRCC3-209ENST00000620502 PLPPR3Q6T4P5 718 aa16.85■□□□□ 0.29
BRCC3-209ENST00000620502 PPP6R1Q9UPN7 881 aa16.19■□□□□ 0.18
BRCC3-209ENST00000620502 ADRA2BP18089 450 aa16.14■□□□□ 0.17
BRCC3-209ENST00000620502 NISCHQ9Y2I1 1504 aa15.88■□□□□ 0.13
BRCC3-209ENST00000620502 PIAS4Q8N2W9 510 aaPredicted RBP15.86■□□□□ 0.13
BRCC3-209ENST00000620502 MSH5O43196 834 aa15.59■□□□□ 0.09
BRCC3-209ENST00000620502 POTEDQ86YR6 584 aa15.35■□□□□ 0.05
BRCC3-209ENST00000620502 PPP4R3CPQ6ZMV5 832 aa14.84□□□□□ -0.03
BRCC3-209ENST00000620502 SCAF1Q9H7N4 1312 aaKnown RBP14.75□□□□□ -0.05
BRCC3-209ENST00000620502 MAPK8IP2Q13387 824 aaPredicted RBP14.68□□□□□ -0.06
BRCC3-209ENST00000620502 DMRT2Q9Y5R5 561 aa14.5□□□□□ -0.09
BRCC3-209ENST00000620502 CNKSR2Q8WXI2 1034 aa14.44□□□□□ -0.1
BRCC3-209ENST00000620502 KCNA4P22459 653 aa14.4□□□□□ -0.1
BRCC3-209ENST00000620502 NCBP3Q53F19 620 aaKnown RBP14.39□□□□□ -0.11
BRCC3-209ENST00000620502 NPM3O75607 178 aaKnown RBP14.23□□□□□ -0.13
BRCC3-209ENST00000620502 RNF216Q9NWF9 866 aaPredicted RBP14.2□□□□□ -0.14
BRCC3-209ENST00000620502 HOXD11P31277 338 aaPredicted RBP14.18□□□□□ -0.14
BRCC3-209ENST00000620502 CCDC180Q9P1Z9 1646 aa14.11□□□□□ -0.15
BRCC3-209ENST00000620502 DNAJC5BQ9UF47 199 aa13.87□□□□□ -0.19
BRCC3-209ENST00000620502 DCAF8L1A6NGE4 600 aa13.8□□□□□ -0.2
BRCC3-209ENST00000620502 ABCC9O60706 1549 aa13.8□□□□□ -0.2
BRCC3-209ENST00000620502 SLC4A1APQ9BWU0 796 aaKnown RBP13.67□□□□□ -0.22
BRCC3-209ENST00000620502 SLC4A2P04920 1241 aa13.47□□□□□ -0.25
BRCC3-209ENST00000620502 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.45□□□□□ -0.26
BRCC3-209ENST00000620502 RNF39Q9H2S5 420 aa13.37□□□□□ -0.27
BRCC3-209ENST00000620502 ZBTB22O15209 634 aa13.27□□□□□ -0.29
BRCC3-209ENST00000620502 U3KPZ7 1027 aaPredicted RBP13.27□□□□□ -0.29
BRCC3-209ENST00000620502 RB1CC1Q8TDY2 1594 aa13.27□□□□□ -0.29
BRCC3-209ENST00000620502 NACADO15069 1562 aa13.26□□□□□ -0.29
BRCC3-209ENST00000620502 FOXD4L1Q9NU39 408 aa13.26□□□□□ -0.29
BRCC3-209ENST00000620502 DCAF8L2P0C7V8 631 aa13.23□□□□□ -0.29
BRCC3-209ENST00000620502 ZCCHC6Q5VYS8 1495 aaKnown RBP13.22□□□□□ -0.29
BRCC3-209ENST00000620502 C1QBPQ07021 282 aaKnown RBP13.19□□□□□ -0.3
BRCC3-209ENST00000620502 MYO15BQ96JP2 1530 aa13.18□□□□□ -0.3
BRCC3-209ENST00000620502 EHMT2Q96KQ7 1210 aa13.16□□□□□ -0.3
BRCC3-209ENST00000620502 DCAF1Q9Y4B6 1507 aa13.13□□□□□ -0.31
BRCC3-209ENST00000620502 MYCNP04198 464 aaPredicted RBP13.13□□□□□ -0.31
BRCC3-209ENST00000620502 CSRNP3Q8WYN3 585 aa13.11□□□□□ -0.31
BRCC3-209ENST00000620502 CACNB1Q02641 598 aaPredicted RBP13.04□□□□□ -0.32
BRCC3-209ENST00000620502 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.03□□□□□ -0.32
BRCC3-209ENST00000620502 HNRNPUL2Q1KMD3 747 aaKnown RBP13.03□□□□□ -0.32
BRCC3-209ENST00000620502 UNC13AQ9UPW8 1703 aa13.02□□□□□ -0.33
BRCC3-209ENST00000620502 SAMD1Q6SPF0 538 aaPredicted RBP12.99□□□□□ -0.33
BRCC3-209ENST00000620502 SPINK5Q9NQ38 1064 aaPredicted RBP12.92□□□□□ -0.34
BRCC3-209ENST00000620502 APLP2Q06481 763 aa12.91□□□□□ -0.34
BRCC3-209ENST00000620502 BICRAQ9NZM4 1560 aa12.9□□□□□ -0.34
BRCC3-209ENST00000620502 PABPN1Q86U42 306 aaKnown RBP eCLIP12.9□□□□□ -0.34
BRCC3-209ENST00000620502 SCRIBQ14160 1630 aa12.86□□□□□ -0.35
BRCC3-209ENST00000620502 CAPN15O75808 1086 aa12.83□□□□□ -0.36
BRCC3-209ENST00000620502 ATXN8OSP0DMR3 200 aa12.82□□□□□ -0.36
BRCC3-209ENST00000620502 ATF5Q9Y2D1 282 aaPredicted RBP12.81□□□□□ -0.36
BRCC3-209ENST00000620502 ZNF219Q9P2Y4 722 aaPredicted RBP12.76□□□□□ -0.37
BRCC3-209ENST00000620502 TRHP20396 242 aaPredicted RBP12.75□□□□□ -0.37
BRCC3-209ENST00000620502 SHROOM4Q9ULL8 1493 aa12.72□□□□□ -0.37
BRCC3-209ENST00000620502 DSG3P32926 999 aa12.69□□□□□ -0.38
BRCC3-209ENST00000620502 ABCB7O75027 752 aa12.59□□□□□ -0.39
BRCC3-209ENST00000620502 POLA2Q14181 598 aa12.55□□□□□ -0.4
BRCC3-209ENST00000620502 EIF4G1Q04637 1599 aaKnown RBP12.54□□□□□ -0.4
BRCC3-209ENST00000620502 CC2D2AQ9P2K1 1620 aa12.5□□□□□ -0.41
BRCC3-209ENST00000620502 CECR2Q9BXF3 1484 aa12.39□□□□□ -0.43
BRCC3-209ENST00000620502 ZBTB12Q9Y330 459 aaPredicted RBP12.32□□□□□ -0.44
BRCC3-209ENST00000620502 SMARCA4P51532 1647 aa12.31□□□□□ -0.44
BRCC3-209ENST00000620502 BAZ1AQ9NRL2 1556 aaPredicted RBP12.29□□□□□ -0.44
BRCC3-209ENST00000620502 MKRN4PQ13434 485 aaPredicted RBP12.26□□□□□ -0.45
BRCC3-209ENST00000620502 NCAPD3P42695 1498 aa12.25□□□□□ -0.45
BRCC3-209ENST00000620502 ATAD2BQ9ULI0 1458 aa12.25□□□□□ -0.45
BRCC3-209ENST00000620502 MROH2BQ7Z745 1585 aa12.24□□□□□ -0.45
BRCC3-209ENST00000620502 FBLN2P98095 1184 aa12.22□□□□□ -0.45
BRCC3-209ENST00000620502 SMARCA2P51531 1590 aa12.21□□□□□ -0.46
BRCC3-209ENST00000620502 PEG3Q9GZU2 1588 aa12.2□□□□□ -0.46
BRCC3-209ENST00000620502 HMGXB3Q12766 1538 aa12.16□□□□□ -0.46
BRCC3-209ENST00000620502 OSCARQ8IYS5 282 aa12.12□□□□□ -0.47
BRCC3-209ENST00000620502 BAZ1BQ9UIG0 1483 aaKnown RBP12.12□□□□□ -0.47
BRCC3-209ENST00000620502 WIZO95785 1651 aa12.12□□□□□ -0.47
BRCC3-209ENST00000620502 RSF1Q96T23 1441 aaPredicted RBP12.1□□□□□ -0.47
BRCC3-209ENST00000620502 RBM42Q9BTD8 480 aaKnown RBP12.06□□□□□ -0.48
BRCC3-209ENST00000620502 SPDYE2BA6NHP3 402 aa11.99□□□□□ -0.49
BRCC3-209ENST00000620502 SPDYE6P0CI01 402 aa11.99□□□□□ -0.49
BRCC3-209ENST00000620502 SPDYE2Q495Y8 402 aa11.99□□□□□ -0.49
BRCC3-209ENST00000620502 TOP2AP11388 1531 aaKnown RBP11.96□□□□□ -0.49
BRCC3-209ENST00000620502 NESP48681 1621 aa11.96□□□□□ -0.5
BRCC3-209ENST00000620502 POTEHQ6S545 545 aa11.94□□□□□ -0.5
BRCC3-209ENST00000620502 ZNF692Q9BU19 519 aaPredicted RBP11.92□□□□□ -0.5
BRCC3-209ENST00000620502 SSUH2Q9Y2M2 353 aa11.92□□□□□ -0.5
BRCC3-209ENST00000620502 AKT1S1Q96B36 256 aa11.91□□□□□ -0.5
BRCC3-209ENST00000620502 LAMC3Q9Y6N6 1575 aa11.91□□□□□ -0.5
BRCC3-209ENST00000620502 SPDYE4A6NLX3 237 aa11.89□□□□□ -0.51
BRCC3-209ENST00000620502 CADPSQ9ULU8 1353 aa11.88□□□□□ -0.51
BRCC3-209ENST00000620502 ERCC6Q03468 1493 aa11.85□□□□□ -0.51
BRCC3-209ENST00000620502 CCDC88BA6NC98 1476 aa11.84□□□□□ -0.51
BRCC3-209ENST00000620502 KIF21AQ7Z4S6 1674 aa11.82□□□□□ -0.52
BRCC3-209ENST00000620502 CFTRP13569 1480 aa11.82□□□□□ -0.52
BRCC3-209ENST00000620502 PDS5BQ9NTI5 1447 aa11.81□□□□□ -0.52
BRCC3-209ENST00000620502 FKBP8Q14318 412 aa11.81□□□□□ -0.52
BRCC3-209ENST00000620502 REM2Q8IYK8 340 aaPredicted RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms