RNA–Protein interactions for RNA: ENST00000618819.4

PTPN9-206, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PTPN9, Length 7,813 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-206ENST00000618819 MIER1Q8N108 512 aa19.13■□□□□ 0.65
PTPN9-206ENST00000618819 SENP3-EIF4A1A0A087X0R7 540 aa19.12■□□□□ 0.65
PTPN9-206ENST00000618819 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.12■□□□□ 0.65
PTPN9-206ENST00000618819 TAOK2Q9UL54 1235 aa19.1■□□□□ 0.65
PTPN9-206ENST00000618819 PPM1GO15355 546 aaPredicted RBP19.09■□□□□ 0.65
PTPN9-206ENST00000618819 ZBTB7CA1YPR0 619 aa19.09■□□□□ 0.65
PTPN9-206ENST00000618819 FBLN2P98095 1184 aa19.07■□□□□ 0.64
PTPN9-206ENST00000618819 PLPPR3Q6T4P5 718 aa19.07■□□□□ 0.64
PTPN9-206ENST00000618819 HIRIP3Q9BW71 556 aaPredicted RBP19.05■□□□□ 0.64
PTPN9-206ENST00000618819 NOP58Q9Y2X3 529 aaKnown RBP19.04■□□□□ 0.64
PTPN9-206ENST00000618819 DEKP35659 375 aaKnown RBP19.03■□□□□ 0.64
PTPN9-206ENST00000618819 A0A0G2JS52 829 aa19.02■□□□□ 0.64
PTPN9-206ENST00000618819 STAG3Q9UJ98 1225 aa19■□□□□ 0.63
PTPN9-206ENST00000618819 CHAF1AQ13111 956 aaPredicted RBP18.97■□□□□ 0.63
PTPN9-206ENST00000618819 MSNP26038 577 aaKnown RBP18.97■□□□□ 0.63
PTPN9-206ENST00000618819 NCBP3Q53F19 620 aaKnown RBP18.97■□□□□ 0.63
PTPN9-206ENST00000618819 GOLGA6L6A8MZA4 724 aa18.96■□□□□ 0.63
PTPN9-206ENST00000618819 SUPT16HQ9Y5B9 1047 aaKnown RBP18.94■□□□□ 0.62
PTPN9-206ENST00000618819 PLEKHG5O94827 1062 aa18.93■□□□□ 0.62
PTPN9-206ENST00000618819 TNNT3P45378 269 aaPredicted RBP18.93■□□□□ 0.62
PTPN9-206ENST00000618819 CASC1Q6TDU7 716 aa18.93■□□□□ 0.62
PTPN9-206ENST00000618819 KDM2AQ9Y2K7 1162 aa18.91■□□□□ 0.62
PTPN9-206ENST00000618819 RGS3P49796 1198 aa18.91■□□□□ 0.62
PTPN9-206ENST00000618819 HSP90AB1P08238 724 aaKnown RBP18.91■□□□□ 0.62
PTPN9-206ENST00000618819 SPRYD3Q8NCJ5 442 aa18.87■□□□□ 0.61
PTPN9-206ENST00000618819 ESF1Q9H501 851 aaKnown RBP18.87■□□□□ 0.61
PTPN9-206ENST00000618819 DRC7Q8IY82 874 aa18.86■□□□□ 0.61
PTPN9-206ENST00000618819 SENP3Q9H4L4 574 aaPredicted RBP18.85■□□□□ 0.61
PTPN9-206ENST00000618819 NRDCO43847 1150 aa18.84■□□□□ 0.61
PTPN9-206ENST00000618819 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.83■□□□□ 0.61
PTPN9-206ENST00000618819 L1TD1Q5T7N2 865 aaKnown RBP18.81■□□□□ 0.6
PTPN9-206ENST00000618819 FTSJ3Q8IY81 847 aaKnown RBP18.81■□□□□ 0.6
PTPN9-206ENST00000618819 CHIC2Q9UKJ5 165 aa18.81■□□□□ 0.6
PTPN9-206ENST00000618819 NAP1L2Q9ULW6 460 aaPredicted RBP18.8■□□□□ 0.6
PTPN9-206ENST00000618819 GOLGA6L4A6NEF3 574 aa18.74■□□□□ 0.59
PTPN9-206ENST00000618819 CLSTN1O94985 981 aa18.74■□□□□ 0.59
PTPN9-206ENST00000618819 B4GALNT3Q6L9W6 998 aa18.74■□□□□ 0.59
PTPN9-206ENST00000618819 FGD1P98174 961 aa18.74■□□□□ 0.59
PTPN9-206ENST00000618819 PPP4R2Q9NY27 417 aa18.72■□□□□ 0.59
PTPN9-206ENST00000618819 C14orf37Q86TY3 774 aa18.72■□□□□ 0.59
PTPN9-206ENST00000618819 GZF1Q9H116 711 aaPredicted RBP18.72■□□□□ 0.59
PTPN9-206ENST00000618819 HSCBQ8IWL3 235 aa18.71■□□□□ 0.58
PTPN9-206ENST00000618819 NEUROD2Q15784 382 aa18.7■□□□□ 0.58
PTPN9-206ENST00000618819 FRAT1Q92837 279 aaPredicted RBP18.7■□□□□ 0.58
PTPN9-206ENST00000618819 PNNQ9H307 717 aaKnown RBP18.69■□□□□ 0.58
PTPN9-206ENST00000618819 NOC3LQ8WTT2 800 aaKnown RBP18.68■□□□□ 0.58
PTPN9-206ENST00000618819 KCNJ4P48050 445 aa18.67■□□□□ 0.58
PTPN9-206ENST00000618819 CSRNP3Q8WYN3 585 aa18.66■□□□□ 0.58
PTPN9-206ENST00000618819 EIF4G2P78344 907 aaKnown RBP eCLIP18.65■□□□□ 0.58
PTPN9-206ENST00000618819 RBM19Q9Y4C8 960 aaKnown RBP18.62■□□□□ 0.57
PTPN9-206ENST00000618819 KIAA2012Q0VF49 1180 aa18.62■□□□□ 0.57
PTPN9-206ENST00000618819 OS9Q13438 667 aaPredicted RBP18.61■□□□□ 0.57
PTPN9-206ENST00000618819 VSIG10Q8N0Z9 540 aa18.6■□□□□ 0.57
PTPN9-206ENST00000618819 PDE4CQ08493 712 aa18.59■□□□□ 0.57
PTPN9-206ENST00000618819 A0A0U1RQG5 324 aaPredicted RBP18.56■□□□□ 0.56
PTPN9-206ENST00000618819 HSP90AA2PQ14568 343 aaPredicted RBP18.56■□□□□ 0.56
PTPN9-206ENST00000618819 GOLGA6L1Q8N7Z2 621 aa18.55■□□□□ 0.56
PTPN9-206ENST00000618819 CFAP53Q96M91 514 aa18.54■□□□□ 0.56
PTPN9-206ENST00000618819 PABPN1Q86U42 306 aaKnown RBP eCLIP18.53■□□□□ 0.56
PTPN9-206ENST00000618819 CALRP27797 417 aaKnown RBP18.53■□□□□ 0.56
PTPN9-206ENST00000618819 SLKQ9H2G2 1235 aaPredicted RBP18.52■□□□□ 0.56
PTPN9-206ENST00000618819 PRM3Q9NNZ6 103 aa18.51■□□□□ 0.55
PTPN9-206ENST00000618819 GNL2Q13823 731 aaKnown RBP18.48■□□□□ 0.55
PTPN9-206ENST00000618819 KNSTRNQ9Y448 316 aa18.48■□□□□ 0.55
PTPN9-206ENST00000618819 MAPK8IP3Q9UPT6 1336 aa18.48■□□□□ 0.55
PTPN9-206ENST00000618819 PATL2C9JE40 543 aaKnown RBP18.48■□□□□ 0.55
PTPN9-206ENST00000618819 GOLGA6L3A6NEY3 463 aa18.47■□□□□ 0.55
PTPN9-206ENST00000618819 MCCP23508 829 aa18.46■□□□□ 0.55
PTPN9-206ENST00000618819 SETQ01105 290 aaPredicted RBP18.46■□□□□ 0.55
PTPN9-206ENST00000618819 GBP4Q96PP9 640 aa18.46■□□□□ 0.55
PTPN9-206ENST00000618819 DCAF1Q9Y4B6 1507 aa18.45■□□□□ 0.54
PTPN9-206ENST00000618819 RGL3Q3MIN7 710 aa18.44■□□□□ 0.54
PTPN9-206ENST00000618819 NPHP1O15259 732 aa18.44■□□□□ 0.54
PTPN9-206ENST00000618819 ISY1Q9ULR0 285 aaKnown RBP18.44■□□□□ 0.54
PTPN9-206ENST00000618819 GOLGA2Q08379 1002 aa18.43■□□□□ 0.54
PTPN9-206ENST00000618819 PTMSP20962 102 aa18.43■□□□□ 0.54
PTPN9-206ENST00000618819 RRP7BPQ9NSQ0 103 aa18.43■□□□□ 0.54
PTPN9-206ENST00000618819 CC2D1BQ5T0F9 858 aaKnown RBP18.41■□□□□ 0.54
PTPN9-206ENST00000618819 APBB1O00213 710 aa18.41■□□□□ 0.54
PTPN9-206ENST00000618819 ANO8Q9HCE9 1232 aaPredicted RBP18.4■□□□□ 0.54
PTPN9-206ENST00000618819 HAP1P54257 671 aaPredicted RBP18.39■□□□□ 0.53
PTPN9-206ENST00000618819 TIMELESSQ9UNS1 1208 aa18.38■□□□□ 0.53
PTPN9-206ENST00000618819 ZNF771Q7L3S4 317 aaPredicted RBP18.38■□□□□ 0.53
PTPN9-206ENST00000618819 PPP1R15AO75807 674 aaPredicted RBP18.37■□□□□ 0.53
PTPN9-206ENST00000618819 TSPY4P0CV99 314 aa18.37■□□□□ 0.53
PTPN9-206ENST00000618819 TSPY10P0CW01 314 aa18.37■□□□□ 0.53
PTPN9-206ENST00000618819 CREBRFQ8IUR6 639 aa18.36■□□□□ 0.53
PTPN9-206ENST00000618819 CHMP4BQ9H444 224 aaKnown RBP18.35■□□□□ 0.53
PTPN9-206ENST00000618819 FOXD4L1Q9NU39 408 aa18.35■□□□□ 0.53
PTPN9-206ENST00000618819 HSP90B1P14625 803 aaKnown RBP18.35■□□□□ 0.53
PTPN9-206ENST00000618819 U2SURPO15042 1029 aaKnown RBP18.35■□□□□ 0.53
PTPN9-206ENST00000618819 RSPH6AQ9H0K4 717 aa18.35■□□□□ 0.53
PTPN9-206ENST00000618819 SYAP1Q96A49 352 aaPredicted RBP18.34■□□□□ 0.53
PTPN9-206ENST00000618819 TPM4P67936 248 aa18.33■□□□□ 0.52
PTPN9-206ENST00000618819 FBXO3Q9UK99 471 aa18.33■□□□□ 0.52
PTPN9-206ENST00000618819 MS4A1P11836 297 aa18.33■□□□□ 0.52
PTPN9-206ENST00000618819 CARD11Q9BXL7 1154 aa18.31■□□□□ 0.52
PTPN9-206ENST00000618819 NUDCQ9Y266 331 aa18.31■□□□□ 0.52
PTPN9-206ENST00000618819 CCAR2Q8N163 923 aaKnown RBP18.28■□□□□ 0.52
PTPN9-206ENST00000618819 KIAA1211Q6ZU35 1233 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 152.3 ms