RNA–Protein interactions for RNA: ENST00000618534.4

NEK3-208, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene NEK3, Length 2,414 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-208ENST00000618534 PHLDB1Q86UU1 1377 aa29.43■■■□□ 2.3
NEK3-208ENST00000618534 SETD5Q9C0A6 1442 aa29.43■■■□□ 2.3
NEK3-208ENST00000618534 CFAP43Q8NDM7 1665 aa29.38■■■□□ 2.29
NEK3-208ENST00000618534 PCF11O94913 1555 aaKnown RBP29.36■■■□□ 2.29
NEK3-208ENST00000618534 FHAD1B1AJZ9 1412 aa29.35■■■□□ 2.29
NEK3-208ENST00000618534 FAM50AQ14320 339 aaKnown RBP29.32■■■□□ 2.28
NEK3-208ENST00000618534 WDR97A6NE52 1622 aa29.29■■■□□ 2.28
NEK3-208ENST00000618534 KCNH8Q96L42 1107 aa29.29■■■□□ 2.28
NEK3-208ENST00000618534 P3H3Q8IVL6 736 aa29.29■■■□□ 2.28
NEK3-208ENST00000618534 SIN3AQ96ST3 1273 aa29.26■■■□□ 2.28
NEK3-208ENST00000618534 ATP1B4Q9UN42 357 aaPredicted RBP29.22■■■□□ 2.27
NEK3-208ENST00000618534 FHOD3Q2V2M9 1422 aa29.21■■■□□ 2.27
NEK3-208ENST00000618534 FANCD2Q9BXW9 1451 aa29.19■■■□□ 2.26
NEK3-208ENST00000618534 FYCO1Q9BQS8 1478 aa29.17■■■□□ 2.26
NEK3-208ENST00000618534 DDX10Q13206 875 aaKnown RBP29.15■■■□□ 2.26
NEK3-208ENST00000618534 RAD54L2Q9Y4B4 1467 aa29.15■■■□□ 2.26
NEK3-208ENST00000618534 EFCAB5A4FU69 1503 aa29.13■■■□□ 2.25
NEK3-208ENST00000618534 DNMBPQ6XZF7 1577 aa29.12■■■□□ 2.25
NEK3-208ENST00000618534 CASKIN1Q8WXD9 1431 aa29.11■■■□□ 2.25
NEK3-208ENST00000618534 ABCA10Q8WWZ4 1543 aa29.11■■■□□ 2.25
NEK3-208ENST00000618534 TIMELESSQ9UNS1 1208 aa29.09■■■□□ 2.25
NEK3-208ENST00000618534 AQRO60306 1485 aaKnown RBP eCLIP29.08■■■□□ 2.253e-7■■■□□ 19
NEK3-208ENST00000618534 CC2D2AQ9P2K1 1620 aa29.08■■■□□ 2.24
NEK3-208ENST00000618534 POLA1P09884 1462 aaPredicted RBP29.07■■■□□ 2.24
NEK3-208ENST00000618534 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.07■■■□□ 2.24
NEK3-208ENST00000618534 PPP1R15AO75807 674 aaPredicted RBP29.06■■■□□ 2.24
NEK3-208ENST00000618534 CTTNBP2Q8WZ74 1663 aa29.05■■■□□ 2.24
NEK3-208ENST00000618534 TOPBP1Q92547 1522 aa29.04■■■□□ 2.24
NEK3-208ENST00000618534 CUL7Q14999 1698 aa29.04■■■□□ 2.24
NEK3-208ENST00000618534 TSHZ2Q9NRE2 1034 aa29.03■■■□□ 2.24
NEK3-208ENST00000618534 HIRIP3Q9BW71 556 aaPredicted RBP29■■■□□ 2.23
NEK3-208ENST00000618534 FGD6Q6ZV73 1430 aa28.99■■■□□ 2.23
NEK3-208ENST00000618534 SNAPC4Q5SXM2 1469 aa28.96■■■□□ 2.23
NEK3-208ENST00000618534 FMN1Q68DA7 1419 aa28.95■■■□□ 2.23
NEK3-208ENST00000618534 CCDC18Q5T9S5 1454 aa28.92■■■□□ 2.22
NEK3-208ENST00000618534 NESP48681 1621 aa28.91■■■□□ 2.22
NEK3-208ENST00000618534 BCANQ96GW7 911 aa28.89■■■□□ 2.22
NEK3-208ENST00000618534 MTUS2Q5JR59 1369 aa28.89■■■□□ 2.21
NEK3-208ENST00000618534 PTPRKQ15262 1439 aa28.88■■■□□ 2.21
NEK3-208ENST00000618534 TONSLQ96HA7 1378 aa28.88■■■□□ 2.21
NEK3-208ENST00000618534 FKBP8Q14318 412 aa28.86■■■□□ 2.21
NEK3-208ENST00000618534 HFM1A2PYH4 1435 aa28.86■■■□□ 2.21
NEK3-208ENST00000618534 CCER2I3L3R5 266 aa28.86■■■□□ 2.21
NEK3-208ENST00000618534 PTPN23Q9H3S7 1636 aa28.86■■■□□ 2.21
NEK3-208ENST00000618534 LRRIQ1Q96JM4 1722 aa28.85■■■□□ 2.21
NEK3-208ENST00000618534 ANP32CO43423 234 aa28.84■■■□□ 2.21
NEK3-208ENST00000618534 UACAQ9BZF9 1416 aa28.84■■■□□ 2.21
NEK3-208ENST00000618534 SAMD9Q5K651 1589 aa28.83■■■□□ 2.21
NEK3-208ENST00000618534 NCOA2Q15596 1464 aa28.79■■■□□ 2.2
NEK3-208ENST00000618534 TRIM52Q96A61 297 aa28.78■■■□□ 2.2
NEK3-208ENST00000618534 URB2Q14146 1524 aaKnown RBP28.77■■■□□ 2.2
NEK3-208ENST00000618534 NAIPQ13075 1403 aa28.77■■■□□ 2.2
NEK3-208ENST00000618534 MYOM3Q5VTT5 1437 aa28.77■■■□□ 2.2
NEK3-208ENST00000618534 GRIN2BQ13224 1484 aa28.76■■■□□ 2.2
NEK3-208ENST00000618534 ABCA5Q8WWZ7 1642 aa28.75■■■□□ 2.19
NEK3-208ENST00000618534 TDRD9Q8NDG6 1382 aaKnown RBP28.73■■■□□ 2.19
NEK3-208ENST00000618534 SUPT6HQ7KZ85 1726 aaKnown RBP28.72■■■□□ 2.19
NEK3-208ENST00000618534 THOC2Q8NI27 1593 aaKnown RBP28.71■■■□□ 2.19
NEK3-208ENST00000618534 EHBP1L1Q8N3D4 1523 aa28.7■■■□□ 2.18
NEK3-208ENST00000618534 NEFLP07196 543 aa28.69■■■□□ 2.18
NEK3-208ENST00000618534 KDM5BQ9UGL1 1544 aa28.69■■■□□ 2.18
NEK3-208ENST00000618534 GAPVD1Q14C86 1478 aa28.67■■■□□ 2.18
NEK3-208ENST00000618534 LAMC3Q9Y6N6 1575 aa28.64■■■□□ 2.18
NEK3-208ENST00000618534 UGGT2Q9NYU1 1516 aa28.64■■■□□ 2.18
NEK3-208ENST00000618534 MAGI3Q5TCQ9 1506 aa28.62■■■□□ 2.17
NEK3-208ENST00000618534 ARHGEF11O15085 1522 aa28.61■■■□□ 2.17
NEK3-208ENST00000618534 KIF21AQ7Z4S6 1674 aa28.58■■■□□ 2.17
NEK3-208ENST00000618534 ANP32EQ9BTT0 268 aa28.57■■■□□ 2.16
NEK3-208ENST00000618534 RRP7BPQ9NSQ0 103 aa28.55■■■□□ 2.16
NEK3-208ENST00000618534 GCC2Q8IWJ2 1684 aa28.54■■■□□ 2.16
NEK3-208ENST00000618534 TCOF1Q13428 1488 aaKnown RBP28.53■■■□□ 2.16
NEK3-208ENST00000618534 DENND4BO75064 1496 aaPredicted RBP28.52■■■□□ 2.16
NEK3-208ENST00000618534 HECW1Q76N89 1606 aa28.52■■■□□ 2.16
NEK3-208ENST00000618534 CHIC2Q9UKJ5 165 aa28.52■■■□□ 2.16
NEK3-208ENST00000618534 KDM6BO15054 1643 aa28.48■■■□□ 2.15
NEK3-208ENST00000618534 HSPA5P11021 654 aaKnown RBP28.47■■■□□ 2.15
NEK3-208ENST00000618534 WASHC2AQ641Q2 1341 aa28.46■■■□□ 2.15
NEK3-208ENST00000618534 AKNAQ7Z591 1439 aa28.44■■■□□ 2.14
NEK3-208ENST00000618534 PDS5BQ9NTI5 1447 aa28.44■■■□□ 2.14
NEK3-208ENST00000618534 HNRNPUQ00839 825 aaKnown RBP eCLIP28.43■■■□□ 2.14
NEK3-208ENST00000618534 RBM19Q9Y4C8 960 aaKnown RBP28.43■■■□□ 2.14
NEK3-208ENST00000618534 TARBP1Q13395 1621 aaKnown RBP28.42■■■□□ 2.14
NEK3-208ENST00000618534 EPRSP07814 1512 aaKnown RBP28.41■■■□□ 2.14
NEK3-208ENST00000618534 CDK13Q14004 1512 aaKnown RBP28.38■■■□□ 2.13
NEK3-208ENST00000618534 IQGAP2Q13576 1575 aa28.36■■■□□ 2.13
NEK3-208ENST00000618534 PBRM1Q86U86 1689 aa28.36■■■□□ 2.13
NEK3-208ENST00000618534 EIF4G2P78344 907 aaKnown RBP eCLIP28.35■■■□□ 2.13
NEK3-208ENST00000618534 MPHOSPH9Q99550 1183 aa28.35■■■□□ 2.13
NEK3-208ENST00000618534 MIA2Q96PC5 1412 aa28.35■■■□□ 2.13
NEK3-208ENST00000618534 CNTLNQ9NXG0 1405 aa28.32■■■□□ 2.12
NEK3-208ENST00000618534 WDR62O43379 1518 aa28.32■■■□□ 2.12
NEK3-208ENST00000618534 L3MBTL2Q969R5 705 aa28.3■■■□□ 2.12
NEK3-208ENST00000618534 FOXD1Q16676 465 aa28.3■■■□□ 2.12
NEK3-208ENST00000618534 ARID3CA6NKF2 412 aa28.29■■■□□ 2.12
NEK3-208ENST00000618534 ADAMTS12P58397 1594 aa28.27■■■□□ 2.12
NEK3-208ENST00000618534 IRX6P78412 446 aaPredicted RBP28.27■■■□□ 2.12
NEK3-208ENST00000618534 DNAJC5BQ9UF47 199 aa28.27■■■□□ 2.12
NEK3-208ENST00000618534 CCDC184Q52MB2 194 aa28.25■■■□□ 2.11
NEK3-208ENST00000618534 NCOA1Q15788 1441 aa28.24■■■□□ 2.11
NEK3-208ENST00000618534 C11orf95C9JLR9 678 aaPredicted RBP28.24■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms