RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 SENP3-EIF4A1A0A087X0R7 540 aa17.41■□□□□ 0.38
LIG1-221ENST00000613670 SETD5Q9C0A6 1442 aa17.4■□□□□ 0.38
LIG1-221ENST00000613670 RRP7BPQ9NSQ0 103 aa17.39■□□□□ 0.37
LIG1-221ENST00000613670 ATAD2BQ9ULI0 1458 aa17.37■□□□□ 0.37
LIG1-221ENST00000613670 BCL11AQ9H165 835 aa17.36■□□□□ 0.37
LIG1-221ENST00000613670 MTUS2Q5JR59 1369 aa17.36■□□□□ 0.37
LIG1-221ENST00000613670 MRS2Q9HD23 443 aa17.35■□□□□ 0.37
LIG1-221ENST00000613670 EIF4G1Q04637 1599 aaKnown RBP17.34■□□□□ 0.37
LIG1-221ENST00000613670 PPP1R15AO75807 674 aaPredicted RBP17.33■□□□□ 0.37
LIG1-221ENST00000613670 CUX2O14529 1486 aa17.33■□□□□ 0.36
LIG1-221ENST00000613670 CARMIL1Q5VZK9 1371 aa17.31■□□□□ 0.36
LIG1-221ENST00000613670 ARAP1Q96P48 1450 aa17.31■□□□□ 0.36
LIG1-221ENST00000613670 CCER2I3L3R5 266 aa17.3■□□□□ 0.36
LIG1-221ENST00000613670 NBR1Q14596 966 aa17.3■□□□□ 0.36
LIG1-221ENST00000613670 RTL5Q5HYW3 569 aaPredicted RBP17.29■□□□□ 0.36
LIG1-221ENST00000613670 EIF4G2P78344 907 aaKnown RBP eCLIP17.28■□□□□ 0.361e-11■■■■■ 55.3
LIG1-221ENST00000613670 B4GALNT3Q6L9W6 998 aa17.26■□□□□ 0.35
LIG1-221ENST00000613670 TIMELESSQ9UNS1 1208 aa17.24■□□□□ 0.35
LIG1-221ENST00000613670 NPM2Q86SE8 214 aaKnown RBP17.22■□□□□ 0.35
LIG1-221ENST00000613670 SALL2Q9Y467 1007 aaPredicted RBP17.22■□□□□ 0.35
LIG1-221ENST00000613670 RRBP1Q9P2E9 1410 aaKnown RBP17.2■□□□□ 0.34
LIG1-221ENST00000613670 HSPA5P11021 654 aaKnown RBP17.19■□□□□ 0.34
LIG1-221ENST00000613670 CCDC136Q96JN2 1154 aa17.19■□□□□ 0.34
LIG1-221ENST00000613670 FHAD1B1AJZ9 1412 aa17.19■□□□□ 0.34
LIG1-221ENST00000613670 PHLDB1Q86UU1 1377 aa17.18■□□□□ 0.34
LIG1-221ENST00000613670 ZNF777Q9ULD5 760 aaPredicted RBP17.18■□□□□ 0.34
LIG1-221ENST00000613670 FOXD1Q16676 465 aa17.18■□□□□ 0.34
LIG1-221ENST00000613670 ANP32AP39687 249 aaKnown RBP17.17■□□□□ 0.34
LIG1-221ENST00000613670 PPP4R2Q9NY27 417 aa17.16■□□□□ 0.34
LIG1-221ENST00000613670 PRXQ9BXM0 1461 aa17.16■□□□□ 0.34
LIG1-221ENST00000613670 FHOD3Q2V2M9 1422 aa17.15■□□□□ 0.34
LIG1-221ENST00000613670 ARHGAP35Q9NRY4 1499 aa17.15■□□□□ 0.34
LIG1-221ENST00000613670 IGF1RP08069 1367 aa17.11■□□□□ 0.33
LIG1-221ENST00000613670 DAXXQ9UER7 740 aaPredicted RBP17.11■□□□□ 0.33
LIG1-221ENST00000613670 SLC4A1APQ9BWU0 796 aaKnown RBP17.11■□□□□ 0.33
LIG1-221ENST00000613670 TMC1Q8TDI8 760 aa17.1■□□□□ 0.33
LIG1-221ENST00000613670 WDR97A6NE52 1622 aa17.09■□□□□ 0.33
LIG1-221ENST00000613670 ERICH3Q5RHP9 1530 aa17.06■□□□□ 0.32
LIG1-221ENST00000613670 ZBTB47Q9UFB7 747 aaPredicted RBP17.05■□□□□ 0.32
LIG1-221ENST00000613670 KDM2AQ9Y2K7 1162 aa17.05■□□□□ 0.32
LIG1-221ENST00000613670 TOP2BQ02880 1626 aa17.05■□□□□ 0.32
LIG1-221ENST00000613670 LRRC9Q6ZRR7 1453 aa17.04■□□□□ 0.32
LIG1-221ENST00000613670 L3MBTL2Q969R5 705 aa17.02■□□□□ 0.32
LIG1-221ENST00000613670 FBLN2P98095 1184 aa17.02■□□□□ 0.32
LIG1-221ENST00000613670 DEKP35659 375 aaKnown RBP16.99■□□□□ 0.31
LIG1-221ENST00000613670 NOP58Q9Y2X3 529 aaKnown RBP16.99■□□□□ 0.31
LIG1-221ENST00000613670 CUX1P39880 1505 aa16.99■□□□□ 0.31
LIG1-221ENST00000613670 MPHOSPH9Q99550 1183 aa16.98■□□□□ 0.31
LIG1-221ENST00000613670 CCDC18Q5T9S5 1454 aa16.97■□□□□ 0.31
LIG1-221ENST00000613670 MYT1LQ9UL68 1186 aa16.96■□□□□ 0.31
LIG1-221ENST00000613670 BICRAQ9NZM4 1560 aa16.96■□□□□ 0.31
LIG1-221ENST00000613670 CCDC184Q52MB2 194 aa16.96■□□□□ 0.31
LIG1-221ENST00000613670 MSH5O43196 834 aa16.95■□□□□ 0.3
LIG1-221ENST00000613670 TDRD9Q8NDG6 1382 aaKnown RBP16.95■□□□□ 0.3
LIG1-221ENST00000613670 WASHC2AQ641Q2 1341 aa16.95■□□□□ 0.3
LIG1-221ENST00000613670 PRKRIP1Q9H875 184 aaPredicted RBP16.94■□□□□ 0.3
LIG1-221ENST00000613670 CADPSQ9ULU8 1353 aa16.93■□□□□ 0.3
LIG1-221ENST00000613670 FMN1Q68DA7 1419 aa16.92■□□□□ 0.3
LIG1-221ENST00000613670 MAPKBP1O60336 1514 aa16.91■□□□□ 0.3
LIG1-221ENST00000613670 FGD5Q6ZNL6 1462 aa16.91■□□□□ 0.3
LIG1-221ENST00000613670 FANCIQ9NVI1 1328 aa16.9■□□□□ 0.3
LIG1-221ENST00000613670 TIAM1Q13009 1591 aa16.9■□□□□ 0.3
LIG1-221ENST00000613670 UNC13AQ9UPW8 1703 aa16.9■□□□□ 0.3
LIG1-221ENST00000613670 FGD6Q6ZV73 1430 aa16.9■□□□□ 0.3
LIG1-221ENST00000613670 LAS1LQ9Y4W2 734 aaKnown RBP16.89■□□□□ 0.29
LIG1-221ENST00000613670 ERICH6BQ5W0A0 696 aa16.89■□□□□ 0.29
LIG1-221ENST00000613670 CARD11Q9BXL7 1154 aa16.86■□□□□ 0.29
LIG1-221ENST00000613670 RAD54L2Q9Y4B4 1467 aa16.86■□□□□ 0.29
LIG1-221ENST00000613670 RTN4Q9NQC3 1192 aaKnown RBP16.85■□□□□ 0.29
LIG1-221ENST00000613670 UACAQ9BZF9 1416 aa16.85■□□□□ 0.29
LIG1-221ENST00000613670 CFDP1Q9UEE9 299 aaPredicted RBP16.84■□□□□ 0.29
LIG1-221ENST00000613670 NCAPD3P42695 1498 aa16.83■□□□□ 0.29
LIG1-221ENST00000613670 PEG3Q9GZU2 1588 aa16.83■□□□□ 0.29
LIG1-221ENST00000613670 RGL3Q3MIN7 710 aa16.83■□□□□ 0.28
LIG1-221ENST00000613670 CFTRP13569 1480 aa16.83■□□□□ 0.28
LIG1-221ENST00000613670 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.82■□□□□ 0.282e-7■■■■□ 25.7
LIG1-221ENST00000613670 ZBED9Q6R2W3 1325 aa16.81■□□□□ 0.28
LIG1-221ENST00000613670 NUDCQ9Y266 331 aa16.79■□□□□ 0.28
LIG1-221ENST00000613670 C11orf95C9JLR9 678 aaPredicted RBP16.78■□□□□ 0.28
LIG1-221ENST00000613670 PKD2Q13563 968 aa16.77■□□□□ 0.28
LIG1-221ENST00000613670 CCDC7Q96M83 1385 aa16.77■□□□□ 0.27
LIG1-221ENST00000613670 NEFMP07197 916 aa16.77■□□□□ 0.27
LIG1-221ENST00000613670 TSPY4P0CV99 314 aa16.77■□□□□ 0.27
LIG1-221ENST00000613670 TSPY10P0CW01 314 aa16.77■□□□□ 0.27
LIG1-221ENST00000613670 KIF7Q2M1P5 1343 aa16.76■□□□□ 0.27
LIG1-221ENST00000613670 CASKIN1Q8WXD9 1431 aa16.76■□□□□ 0.27
LIG1-221ENST00000613670 FANCD2Q9BXW9 1451 aa16.75■□□□□ 0.27
LIG1-221ENST00000613670 PAK3O75914 559 aaPredicted RBP16.75■□□□□ 0.27
LIG1-221ENST00000613670 NBPF8Q3BBV2 869 aa16.75■□□□□ 0.27
LIG1-221ENST00000613670 DCAF11Q8TEB1 546 aa16.75■□□□□ 0.27
LIG1-221ENST00000613670 MYOM3Q5VTT5 1437 aa16.74■□□□□ 0.27
LIG1-221ENST00000613670 IPO9Q96P70 1041 aaKnown RBP16.74■□□□□ 0.27
LIG1-221ENST00000613670 CNTLNQ9NXG0 1405 aa16.74■□□□□ 0.27
LIG1-221ENST00000613670 CC2D1BQ5T0F9 858 aaKnown RBP16.73■□□□□ 0.27
LIG1-221ENST00000613670 BIVM-ERCC5R4GMW8 1640 aa16.73■□□□□ 0.27
LIG1-221ENST00000613670 NCOA2Q15596 1464 aa16.73■□□□□ 0.27
LIG1-221ENST00000613670 ZNF644Q9H582 1327 aaPredicted RBP16.73■□□□□ 0.27
LIG1-221ENST00000613670 HFM1A2PYH4 1435 aa16.72■□□□□ 0.27
LIG1-221ENST00000613670 PCF11O94913 1555 aaKnown RBP16.72■□□□□ 0.27
LIG1-221ENST00000613670 NAIPQ13075 1403 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms