RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 CUX1P39880 1505 aa14.52□□□□□ -0.09
CCDC47-207ENST00000612558 EEA1Q15075 1411 aa14.51□□□□□ -0.09
CCDC47-207ENST00000612558 SOGA1O94964 1423 aa14.5□□□□□ -0.09
CCDC47-207ENST00000612558 SP7Q8TDD2 431 aaPredicted RBP14.5□□□□□ -0.09
CCDC47-207ENST00000612558 PDS5BQ9NTI5 1447 aa14.49□□□□□ -0.09
CCDC47-207ENST00000612558 PITPNM1O00562 1244 aa14.48□□□□□ -0.09
CCDC47-207ENST00000612558 SPDYE2BA6NHP3 402 aa14.45□□□□□ -0.1
CCDC47-207ENST00000612558 SPDYE6P0CI01 402 aa14.45□□□□□ -0.1
CCDC47-207ENST00000612558 SPDYE2Q495Y8 402 aa14.45□□□□□ -0.1
CCDC47-207ENST00000612558 CEP164Q9UPV0 1460 aa14.44□□□□□ -0.1
CCDC47-207ENST00000612558 CSRNP3Q8WYN3 585 aa14.44□□□□□ -0.1
CCDC47-207ENST00000612558 RUSC2Q8N2Y8 1516 aa14.44□□□□□ -0.1
CCDC47-207ENST00000612558 FXR2P51116 673 aaKnown RBP eCLIP14.42□□□□□ -0.16e-8■■□□□ 13.1
CCDC47-207ENST00000612558 DNMBPQ6XZF7 1577 aa14.4□□□□□ -0.1
CCDC47-207ENST00000612558 HAX1O00165 279 aa14.39□□□□□ -0.11
CCDC47-207ENST00000612558 TOPBP1Q92547 1522 aa14.38□□□□□ -0.11
CCDC47-207ENST00000612558 FGD5Q6ZNL6 1462 aa14.37□□□□□ -0.11
CCDC47-207ENST00000612558 KIF21AQ7Z4S6 1674 aa14.36□□□□□ -0.11
CCDC47-207ENST00000612558 EHMT2Q96KQ7 1210 aa14.34□□□□□ -0.11
CCDC47-207ENST00000612558 URB2Q14146 1524 aaKnown RBP14.34□□□□□ -0.11
CCDC47-207ENST00000612558 KIF27Q86VH2 1401 aa14.34□□□□□ -0.11
CCDC47-207ENST00000612558 POLA1P09884 1462 aaPredicted RBP14.3□□□□□ -0.12
CCDC47-207ENST00000612558 KIF21BO75037 1637 aa14.28□□□□□ -0.12
CCDC47-207ENST00000612558 CUX2O14529 1486 aa14.28□□□□□ -0.12
CCDC47-207ENST00000612558 GOLGA3Q08378 1498 aa14.28□□□□□ -0.12
CCDC47-207ENST00000612558 SPDYE1Q8NFV5 336 aaPredicted RBP14.28□□□□□ -0.12
CCDC47-207ENST00000612558 MRC2Q9UBG0 1479 aa14.28□□□□□ -0.12
CCDC47-207ENST00000612558 TNIKQ9UKE5 1360 aa14.25□□□□□ -0.13
CCDC47-207ENST00000612558 RAD54L2Q9Y4B4 1467 aa14.25□□□□□ -0.13
CCDC47-207ENST00000612558 ABCA10Q8WWZ4 1543 aa14.25□□□□□ -0.13
CCDC47-207ENST00000612558 UBTFP17480 764 aaKnown RBP14.25□□□□□ -0.13
CCDC47-207ENST00000612558 ZNF692Q9BU19 519 aaPredicted RBP14.25□□□□□ -0.13
CCDC47-207ENST00000612558 ERCC6Q03468 1493 aa14.23□□□□□ -0.13
CCDC47-207ENST00000612558 PRXQ9BXM0 1461 aa14.23□□□□□ -0.13
CCDC47-207ENST00000612558 CLEC11AQ9Y240 323 aa14.22□□□□□ -0.13
CCDC47-207ENST00000612558 IGF1RP08069 1367 aa14.22□□□□□ -0.13
CCDC47-207ENST00000612558 RAPGEF2Q9Y4G8 1499 aa14.21□□□□□ -0.14
CCDC47-207ENST00000612558 ERICH3Q5RHP9 1530 aa14.2□□□□□ -0.14
CCDC47-207ENST00000612558 WDR62O43379 1518 aa14.19□□□□□ -0.14
CCDC47-207ENST00000612558 MKRN4PQ13434 485 aaPredicted RBP14.18□□□□□ -0.14
CCDC47-207ENST00000612558 SSUH2Q9Y2M2 353 aa14.17□□□□□ -0.14
CCDC47-207ENST00000612558 WDR97A6NE52 1622 aa14.16□□□□□ -0.14
CCDC47-207ENST00000612558 CEP162Q5TB80 1403 aa14.16□□□□□ -0.14
CCDC47-207ENST00000612558 PRKAR2AP13861 404 aaKnown RBP14.15□□□□□ -0.14
CCDC47-207ENST00000612558 TARBP1Q13395 1621 aaKnown RBP14.15□□□□□ -0.15
CCDC47-207ENST00000612558 CARMIL1Q5VZK9 1371 aa14.14□□□□□ -0.15
CCDC47-207ENST00000612558 TDRD9Q8NDG6 1382 aaKnown RBP14.13□□□□□ -0.15
CCDC47-207ENST00000612558 THOC2Q8NI27 1593 aaKnown RBP14.13□□□□□ -0.15
CCDC47-207ENST00000612558 GAPVD1Q14C86 1478 aa14.11□□□□□ -0.15
CCDC47-207ENST00000612558 IFT140Q96RY7 1462 aa14.11□□□□□ -0.15
CCDC47-207ENST00000612558 ABCA5Q8WWZ7 1642 aa14.11□□□□□ -0.15
CCDC47-207ENST00000612558 CUL7Q14999 1698 aa14.08□□□□□ -0.16
CCDC47-207ENST00000612558 CLIP1P30622 1438 aa14.06□□□□□ -0.16
CCDC47-207ENST00000612558 AQRO60306 1485 aaKnown RBP eCLIP14.04□□□□□ -0.168e-8■■■□□ 15.3
CCDC47-207ENST00000612558 EVX2Q03828 476 aa14.02□□□□□ -0.16
CCDC47-207ENST00000612558 ZNF608Q9ULD9 1512 aaPredicted RBP14□□□□□ -0.17
CCDC47-207ENST00000612558 GRIN2BQ13224 1484 aa14□□□□□ -0.17
CCDC47-207ENST00000612558 PBRM1Q86U86 1689 aa14□□□□□ -0.17
CCDC47-207ENST00000612558 PRR29P0C7W0 189 aa14□□□□□ -0.17
CCDC47-207ENST00000612558 RANGAP1P46060 587 aaPredicted RBP13.98□□□□□ -0.17
CCDC47-207ENST00000612558 FHAD1B1AJZ9 1412 aa13.97□□□□□ -0.17
CCDC47-207ENST00000612558 C19orf67A6NJJ6 358 aa13.96□□□□□ -0.17
CCDC47-207ENST00000612558 EIF4G3O43432 1585 aaKnown RBP13.95□□□□□ -0.18
CCDC47-207ENST00000612558 VPS8Q8N3P4 1428 aa13.94□□□□□ -0.18
CCDC47-207ENST00000612558 ADAMTS12P58397 1594 aa13.93□□□□□ -0.18
CCDC47-207ENST00000612558 TRIM26Q12899 539 aaPredicted RBP13.91□□□□□ -0.18
CCDC47-207ENST00000612558 ARAP1Q96P48 1450 aa13.9□□□□□ -0.18
CCDC47-207ENST00000612558 ARHGAP35Q9NRY4 1499 aa13.9□□□□□ -0.18
CCDC47-207ENST00000612558 CTTNBP2Q8WZ74 1663 aa13.9□□□□□ -0.18
CCDC47-207ENST00000612558 SNAPC4Q5SXM2 1469 aa13.89□□□□□ -0.19
CCDC47-207ENST00000612558 MAGI1Q96QZ7 1491 aaPredicted RBP13.89□□□□□ -0.19
CCDC47-207ENST00000612558 CHADLQ6NUI6 762 aa13.88□□□□□ -0.19
CCDC47-207ENST00000612558 PCGF6Q9BYE7 350 aa13.88□□□□□ -0.19
CCDC47-207ENST00000612558 PPARGC1BQ86YN6 1023 aaKnown RBP13.84□□□□□ -0.19
CCDC47-207ENST00000612558 EFCAB5A4FU69 1503 aa13.84□□□□□ -0.19
CCDC47-207ENST00000612558 SYNJ2O15056 1496 aa13.83□□□□□ -0.19
CCDC47-207ENST00000612558 GRIN2AQ12879 1464 aa13.83□□□□□ -0.2
CCDC47-207ENST00000612558 CHMP7Q8WUX9 453 aaPredicted RBP13.83□□□□□ -0.2
CCDC47-207ENST00000612558 GABBR2O75899 941 aa13.81□□□□□ -0.2
CCDC47-207ENST00000612558 IQGAP2Q13576 1575 aa13.79□□□□□ -0.2
CCDC47-207ENST00000612558 P3H3Q8IVL6 736 aa13.79□□□□□ -0.2
CCDC47-207ENST00000612558 KIAA0586Q9BVV6 1533 aa13.78□□□□□ -0.2
CCDC47-207ENST00000612558 SAMD9Q5K651 1589 aa13.77□□□□□ -0.21
CCDC47-207ENST00000612558 FHOD3Q2V2M9 1422 aa13.76□□□□□ -0.21
CCDC47-207ENST00000612558 FMN1Q68DA7 1419 aa13.74□□□□□ -0.21
CCDC47-207ENST00000612558 UGGT2Q9NYU1 1516 aa13.73□□□□□ -0.21
CCDC47-207ENST00000612558 NUP160Q12769 1436 aa13.73□□□□□ -0.21
CCDC47-207ENST00000612558 TTBK1Q5TCY1 1321 aaPredicted RBP13.73□□□□□ -0.21
CCDC47-207ENST00000612558 CEP170Q5SW79 1584 aa13.72□□□□□ -0.21
CCDC47-207ENST00000612558 FARP1Q9Y4F1 1045 aaPredicted RBP13.72□□□□□ -0.21
CCDC47-207ENST00000612558 MAP3K1Q13233 1512 aa13.71□□□□□ -0.22
CCDC47-207ENST00000612558 CLCN6P51797 869 aa13.71□□□□□ -0.22
CCDC47-207ENST00000612558 CD44P16070 742 aaKnown RBP13.7□□□□□ -0.22
CCDC47-207ENST00000612558 CASKIN1Q8WXD9 1431 aa13.7□□□□□ -0.22
CCDC47-207ENST00000612558 STAG3Q9UJ98 1225 aa13.69□□□□□ -0.22
CCDC47-207ENST00000612558 FYCO1Q9BQS8 1478 aa13.69□□□□□ -0.22
CCDC47-207ENST00000612558 PCF11O94913 1555 aaKnown RBP13.68□□□□□ -0.22
CCDC47-207ENST00000612558 KANK4Q5T7N3 995 aaPredicted RBP13.67□□□□□ -0.22
CCDC47-207ENST00000612558 DISP1Q96F81 1524 aa13.66□□□□□ -0.22
CCDC47-207ENST00000612558 JPH4Q96JJ6 628 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms