RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 AEBP2Q6ZN18 517 aaPredicted RBP26.57■■□□□ 1.84
CCDC47-207ENST00000612558 CHIC1Q5VXU3 224 aa25.16■■□□□ 1.62
CCDC47-207ENST00000612558 SENP3Q9H4L4 574 aaPredicted RBP22.9■■□□□ 1.26
CCDC47-207ENST00000612558 PHF23Q9BUL5 403 aaPredicted RBP22.5■■□□□ 1.19
CCDC47-207ENST00000612558 FOXD1Q16676 465 aa21.24■□□□□ 0.99
CCDC47-207ENST00000612558 NISCHQ9Y2I1 1504 aa20.12■□□□□ 0.81
CCDC47-207ENST00000612558 MSH5O43196 834 aa20.12■□□□□ 0.81
CCDC47-207ENST00000612558 PLPPR3Q6T4P5 718 aa20.09■□□□□ 0.81
CCDC47-207ENST00000612558 PIAS4Q8N2W9 510 aaPredicted RBP19.87■□□□□ 0.77
CCDC47-207ENST00000612558 POTEDQ86YR6 584 aa19.84■□□□□ 0.77
CCDC47-207ENST00000612558 PPP6R1Q9UPN7 881 aa19.64■□□□□ 0.73
CCDC47-207ENST00000612558 ADRA2BP18089 450 aa19.61■□□□□ 0.73
CCDC47-207ENST00000612558 SCAF1Q9H7N4 1312 aaKnown RBP18.18■□□□□ 0.5
CCDC47-207ENST00000612558 DMRT2Q9Y5R5 561 aa18.08■□□□□ 0.48
CCDC47-207ENST00000612558 MAPK8IP2Q13387 824 aaPredicted RBP18.04■□□□□ 0.48
CCDC47-207ENST00000612558 CCDC180Q9P1Z9 1646 aa17.53■□□□□ 0.4
CCDC47-207ENST00000612558 PPP4R3CPQ6ZMV5 832 aa17.53■□□□□ 0.4
CCDC47-207ENST00000612558 DCAF8L1A6NGE4 600 aa17.4■□□□□ 0.38
CCDC47-207ENST00000612558 CACNB1Q02641 598 aaPredicted RBP17.36■□□□□ 0.37
CCDC47-207ENST00000612558 HOXD11P31277 338 aaPredicted RBP17.32■□□□□ 0.36
CCDC47-207ENST00000612558 CNKSR2Q8WXI2 1034 aa17.3■□□□□ 0.36
CCDC47-207ENST00000612558 RNF216Q9NWF9 866 aaPredicted RBP17.19■□□□□ 0.34
CCDC47-207ENST00000612558 RNF39Q9H2S5 420 aa17.05■□□□□ 0.32
CCDC47-207ENST00000612558 NCBP3Q53F19 620 aaKnown RBP16.94■□□□□ 0.3
CCDC47-207ENST00000612558 ZCCHC6Q5VYS8 1495 aaKnown RBP16.89■□□□□ 0.29
CCDC47-207ENST00000612558 C1QBPQ07021 282 aaKnown RBP16.88■□□□□ 0.29
CCDC47-207ENST00000612558 DNAJC5BQ9UF47 199 aa16.86■□□□□ 0.29
CCDC47-207ENST00000612558 DCAF1Q9Y4B6 1507 aa16.65■□□□□ 0.26
CCDC47-207ENST00000612558 DCAF8L2P0C7V8 631 aa16.64■□□□□ 0.25
CCDC47-207ENST00000612558 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.59■□□□□ 0.253e-7■■□□□ 14.2
CCDC47-207ENST00000612558 ABCC9O60706 1549 aa16.58■□□□□ 0.24
CCDC47-207ENST00000612558 NPM3O75607 178 aaKnown RBP16.51■□□□□ 0.23
CCDC47-207ENST00000612558 MYO15BQ96JP2 1530 aa16.47■□□□□ 0.23
CCDC47-207ENST00000612558 SHROOM4Q9ULL8 1493 aa16.39■□□□□ 0.21
CCDC47-207ENST00000612558 NACADO15069 1562 aa16.35■□□□□ 0.21
CCDC47-207ENST00000612558 RB1CC1Q8TDY2 1594 aa16.21■□□□□ 0.18
CCDC47-207ENST00000612558 SCRIBQ14160 1630 aa16.1■□□□□ 0.17
CCDC47-207ENST00000612558 U3KPZ7 1027 aaPredicted RBP16.09■□□□□ 0.17
CCDC47-207ENST00000612558 CAPN15O75808 1086 aa16■□□□□ 0.15
CCDC47-207ENST00000612558 KCNA4P22459 653 aa15.99■□□□□ 0.15
CCDC47-207ENST00000612558 SPINK5Q9NQ38 1064 aaPredicted RBP15.9■□□□□ 0.14
CCDC47-207ENST00000612558 APLP2Q06481 763 aa15.89■□□□□ 0.13
CCDC47-207ENST00000612558 DSG3P32926 999 aa15.88■□□□□ 0.13
CCDC47-207ENST00000612558 UNC13AQ9UPW8 1703 aa15.84■□□□□ 0.13
CCDC47-207ENST00000612558 SUPT5HO00267 1087 aaKnown RBP15.8■□□□□ 0.12
CCDC47-207ENST00000612558 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.79■□□□□ 0.12
CCDC47-207ENST00000612558 HNRNPUL2Q1KMD3 747 aaKnown RBP15.79■□□□□ 0.12
CCDC47-207ENST00000612558 SLC4A2P04920 1241 aa15.77■□□□□ 0.11
CCDC47-207ENST00000612558 ZNF219Q9P2Y4 722 aaPredicted RBP15.7■□□□□ 0.1
CCDC47-207ENST00000612558 BICRAQ9NZM4 1560 aa15.7■□□□□ 0.1
CCDC47-207ENST00000612558 TRHP20396 242 aaPredicted RBP15.68■□□□□ 0.1
CCDC47-207ENST00000612558 PABPN1Q86U42 306 aaKnown RBP eCLIP15.66■□□□□ 0.1
CCDC47-207ENST00000612558 SAMD1Q6SPF0 538 aaPredicted RBP15.63■□□□□ 0.09
CCDC47-207ENST00000612558 CECR2Q9BXF3 1484 aa15.62■□□□□ 0.09
CCDC47-207ENST00000612558 RSF1Q96T23 1441 aaPredicted RBP15.61■□□□□ 0.09
CCDC47-207ENST00000612558 POTEHQ6S545 545 aa15.55■□□□□ 0.08
CCDC47-207ENST00000612558 BAZ1AQ9NRL2 1556 aaPredicted RBP15.54■□□□□ 0.08
CCDC47-207ENST00000612558 ABCB7O75027 752 aa15.53■□□□□ 0.08
CCDC47-207ENST00000612558 MROH2BQ7Z745 1585 aa15.52■□□□□ 0.08
CCDC47-207ENST00000612558 SMARCA4P51532 1647 aa15.45■□□□□ 0.06
CCDC47-207ENST00000612558 WIZO95785 1651 aa15.39■□□□□ 0.05
CCDC47-207ENST00000612558 MYCNP04198 464 aaPredicted RBP15.37■□□□□ 0.05
CCDC47-207ENST00000612558 RBM42Q9BTD8 480 aaKnown RBP15.32■□□□□ 0.04
CCDC47-207ENST00000612558 PEG3Q9GZU2 1588 aa15.28■□□□□ 0.04
CCDC47-207ENST00000612558 TOP2AP11388 1531 aaKnown RBP15.25■□□□□ 0.03
CCDC47-207ENST00000612558 EIF4G1Q04637 1599 aaKnown RBP15.23■□□□□ 0.03
CCDC47-207ENST00000612558 ATAD2BQ9ULI0 1458 aa15.21■□□□□ 0.03
CCDC47-207ENST00000612558 SMARCA2P51531 1590 aa15.21■□□□□ 0.03
CCDC47-207ENST00000612558 POLA2Q14181 598 aa15.2■□□□□ 0.02
CCDC47-207ENST00000612558 SLC4A1APQ9BWU0 796 aaKnown RBP15.15■□□□□ 0.02
CCDC47-207ENST00000612558 BAZ1BQ9UIG0 1483 aaKnown RBP15.13■□□□□ 0.01
CCDC47-207ENST00000612558 CCDC88BA6NC98 1476 aa15.11■□□□□ 0.01
CCDC47-207ENST00000612558 NCAPD3P42695 1498 aa15.11■□□□□ 0.01
CCDC47-207ENST00000612558 FOXD4L1Q9NU39 408 aa15.07■□□□□ 0
CCDC47-207ENST00000612558 HMGXB3Q12766 1538 aa15.06■□□□□ 0
CCDC47-207ENST00000612558 ZBTB12Q9Y330 459 aaPredicted RBP15.02□□□□□ -0.01
CCDC47-207ENST00000612558 CC2D2AQ9P2K1 1620 aa15□□□□□ -0.01
CCDC47-207ENST00000612558 CHRDL2Q6WN34 429 aa14.96□□□□□ -0.01
CCDC47-207ENST00000612558 TRIM41Q8WV44 630 aa14.88□□□□□ -0.03
CCDC47-207ENST00000612558 AKT1S1Q96B36 256 aa14.86□□□□□ -0.03
CCDC47-207ENST00000612558 ATF5Q9Y2D1 282 aaPredicted RBP14.85□□□□□ -0.03
CCDC47-207ENST00000612558 ABCC8Q09428 1581 aa14.76□□□□□ -0.05
CCDC47-207ENST00000612558 CFTRP13569 1480 aa14.76□□□□□ -0.05
CCDC47-207ENST00000612558 CADPSQ9ULU8 1353 aa14.72□□□□□ -0.05
CCDC47-207ENST00000612558 WRNQ14191 1432 aaPredicted RBP eCLIP14.7□□□□□ -0.06
CCDC47-207ENST00000612558 ATXN8OSP0DMR3 200 aa14.68□□□□□ -0.06
CCDC47-207ENST00000612558 OSCARQ8IYS5 282 aa14.68□□□□□ -0.06
CCDC47-207ENST00000612558 REM2Q8IYK8 340 aaPredicted RBP14.67□□□□□ -0.06
CCDC47-207ENST00000612558 PRDM2Q13029 1718 aa14.65□□□□□ -0.06
CCDC47-207ENST00000612558 ZBTB22O15209 634 aa14.6□□□□□ -0.07
CCDC47-207ENST00000612558 SYNJ1O43426 1573 aa14.6□□□□□ -0.07
CCDC47-207ENST00000612558 FAM9AQ8IZU1 332 aaPredicted RBP14.58□□□□□ -0.08
CCDC47-207ENST00000612558 LAMC3Q9Y6N6 1575 aa14.57□□□□□ -0.08
CCDC47-207ENST00000612558 TOP2BQ02880 1626 aa14.56□□□□□ -0.08
CCDC47-207ENST00000612558 NESP48681 1621 aa14.55□□□□□ -0.08
CCDC47-207ENST00000612558 LOC105371045A0A1W2PR82 267 aa14.55□□□□□ -0.08
CCDC47-207ENST00000612558 FBLN2P98095 1184 aa14.54□□□□□ -0.08
CCDC47-207ENST00000612558 BIVM-ERCC5R4GMW8 1640 aa14.54□□□□□ -0.08
CCDC47-207ENST00000612558 FANCD2Q9BXW9 1451 aa14.53□□□□□ -0.08
CCDC47-207ENST00000612558 PIP4P2Q8N4L2 257 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms